HEADER PROTON TRANSPORT 29-JUN-18 6GYH TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN PROTON PUMP COCCOMYXA TITLE 2 SUBELLIPSOIDEA RHODOPSIN CSR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY A G PROTEIN-COUPLED RECEPTOR-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCOMYXA SUBELLIPSOIDEA C-169; SOURCE 3 ORGANISM_COMMON: GREEN MICROALGA; SOURCE 4 ORGANISM_TAXID: 574566; SOURCE 5 GENE: COCSUDRAFT_42526; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS RETINAL, MICROBIAL-TYPE RHODOPSIN, LIGHT-DRIVEN PROTON PUMP, SEVEN KEYWDS 2 TRANS-MEMBRANE, TRANSPORT PROTEIN, PROTON TRANSPORT, MEMBRANE KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SZCZEPEK,A.SCHMIDT,P.SCHEERER REVDAT 3 17-JAN-24 6GYH 1 REMARK REVDAT 2 03-APR-19 6GYH 1 JRNL REVDAT 1 27-MAR-19 6GYH 0 JRNL AUTH R.FUDIM,M.SZCZEPEK,J.VIEROCK,A.VOGT,A.SCHMIDT,G.KLEINAU, JRNL AUTH 2 P.FISCHER,F.BARTL,P.SCHEERER,P.HEGEMANN JRNL TITL DESIGN OF A LIGHT-GATED PROTON CHANNEL BASED ON THE CRYSTAL JRNL TITL 2 STRUCTURE OFCOCCOMYXARHODOPSIN. JRNL REF SCI.SIGNAL. V. 12 2019 JRNL REFN ESSN 1937-9145 JRNL PMID 30890657 JRNL DOI 10.1126/SCISIGNAL.AAV4203 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1533 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1889 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1863 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2566 ; 1.973 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4249 ; 2.297 ; 2.955 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 5.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;37.100 ;21.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 240 ;11.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.193 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2069 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 473 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 903 ; 2.210 ; 3.105 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 902 ; 2.181 ; 3.101 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1128 ; 2.764 ; 4.645 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1129 ; 2.764 ; 4.649 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 2.011 ; 3.393 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 985 ; 1.982 ; 3.393 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1436 ; 2.284 ; 4.989 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2216 ; 2.983 ;26.274 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2216 ; 2.969 ;26.269 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3746 ; 1.291 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 16 ;42.288 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3720 ; 6.341 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3650 -34.4103 -0.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.1327 T22: 0.1692 REMARK 3 T33: 0.0125 T12: 0.0330 REMARK 3 T13: 0.0026 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4647 L22: 0.6557 REMARK 3 L33: 1.6269 L12: 0.2627 REMARK 3 L13: -0.6245 L23: -0.1821 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: -0.0135 S13: 0.0438 REMARK 3 S21: -0.0136 S22: -0.0101 S23: 0.0895 REMARK 3 S31: -0.1889 S32: -0.0322 S33: -0.0427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8729 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1-(9Z-OCTADECENOYL)-RAC-GLYCEROL, 10 % REMARK 280 CHOLESTEROL, 42 % V/V POLYETHYLENE GLYCOL 400; 100 MM MES; PH REMARK 280 6.5, 150 MM SODIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.03900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.53918 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.98367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 39.03900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.53918 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.98367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 39.03900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.53918 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.98367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.07835 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.96733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.07835 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.96733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.07835 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.96733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -39.03900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -67.61753 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 39.03900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -67.61753 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 227 REMARK 465 LEU A 228 REMARK 465 ILE A 229 REMARK 465 ALA A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 VAL A 30 CG1 CG2 REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 470 HIS A 226 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 154 -89.58 -118.88 REMARK 500 ALA A 192 -90.51 -104.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLB A 303 REMARK 610 OLB A 304 REMARK 610 OLB A 306 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 306 DBREF 6GYH A 1 230 UNP I0YUS5 I0YUS5_COCSC 1 230 SEQADV 6GYH HIS A 231 UNP I0YUS5 EXPRESSION TAG SEQADV 6GYH HIS A 232 UNP I0YUS5 EXPRESSION TAG SEQADV 6GYH HIS A 233 UNP I0YUS5 EXPRESSION TAG SEQADV 6GYH HIS A 234 UNP I0YUS5 EXPRESSION TAG SEQADV 6GYH HIS A 235 UNP I0YUS5 EXPRESSION TAG SEQADV 6GYH HIS A 236 UNP I0YUS5 EXPRESSION TAG SEQRES 1 A 236 MET ALA VAL HIS GLN ILE GLY GLU GLY GLY LEU VAL MET SEQRES 2 A 236 TYR TRP VAL THR PHE GLY LEU MET ALA PHE SER ALA LEU SEQRES 3 A 236 ALA PHE ALA VAL MET THR PHE THR ARG PRO LEU ASN LYS SEQRES 4 A 236 ARG SER HIS GLY TYR ILE THR LEU ALA ILE VAL THR ILE SEQRES 5 A 236 ALA ALA ILE ALA TYR TYR ALA MET ALA ALA SER GLY GLY SEQRES 6 A 236 LYS ALA LEU VAL SER ASN PRO ASP GLY ASN LEU ARG ASP SEQRES 7 A 236 ILE TYR TYR ALA ARG TYR ILE ASP TRP PHE PHE THR THR SEQRES 8 A 236 PRO LEU LEU LEU LEU ASP ILE ILE LEU LEU THR GLY ILE SEQRES 9 A 236 PRO ILE GLY VAL THR LEU TRP ILE VAL LEU ALA ASP VAL SEQRES 10 A 236 ALA MET ILE MET LEU GLY LEU PHE GLY ALA LEU SER THR SEQRES 11 A 236 ASN SER TYR ARG TRP GLY TYR TYR GLY VAL SER CYS ALA SEQRES 12 A 236 PHE PHE PHE VAL VAL LEU TRP GLY LEU PHE PHE PRO GLY SEQRES 13 A 236 ALA LYS GLY ALA ARG ALA ARG GLY GLY GLN VAL PRO GLY SEQRES 14 A 236 LEU TYR PHE GLY LEU ALA GLY TYR LEU ALA LEU LEU TRP SEQRES 15 A 236 PHE GLY TYR PRO ILE VAL TRP GLY LEU ALA GLU GLY SER SEQRES 16 A 236 ASP TYR ILE SER VAL THR ALA GLU ALA ALA SER TYR ALA SEQRES 17 A 236 GLY LEU ASP ILE ALA ALA LYS VAL VAL PHE GLY TRP ALA SEQRES 18 A 236 VAL MET LEU SER HIS PRO LEU ILE ALA HIS HIS HIS HIS SEQRES 19 A 236 HIS HIS HET RET A 301 20 HET CLR A 302 28 HET OLB A 303 17 HET OLB A 304 11 HET OLB A 305 25 HET OLB A 306 17 HETNAM RET RETINAL HETNAM CLR CHOLESTEROL HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE FORMUL 2 RET C20 H28 O FORMUL 3 CLR C27 H46 O FORMUL 4 OLB 4(C21 H40 O4) FORMUL 8 HOH *42(H2 O) HELIX 1 AA1 GLY A 7 ARG A 35 1 29 HELIX 2 AA2 PRO A 36 LYS A 39 5 4 HELIX 3 AA3 ARG A 40 ALA A 62 1 23 HELIX 4 AA4 TYR A 80 LEU A 100 1 21 HELIX 5 AA5 PRO A 105 SER A 129 1 25 HELIX 6 AA6 TYR A 133 PHE A 154 1 22 HELIX 7 AA7 PHE A 154 GLY A 164 1 11 HELIX 8 AA8 GLN A 166 PHE A 183 1 18 HELIX 9 AA9 PHE A 183 ALA A 192 1 10 HELIX 10 AB1 SER A 199 LEU A 224 1 26 SHEET 1 AA1 3 VAL A 3 HIS A 4 0 SHEET 2 AA1 3 LEU A 76 ILE A 79 1 O LEU A 76 N HIS A 4 SHEET 3 AA1 3 ALA A 67 SER A 70 -1 N ALA A 67 O ILE A 79 LINK NZ LYS A 215 C15 RET A 301 1555 1555 1.23 SITE 1 AC1 13 TRP A 87 THR A 91 LEU A 94 MET A 119 SITE 2 AC1 13 GLY A 123 TYR A 138 SER A 141 TRP A 182 SITE 3 AC1 13 TYR A 185 PRO A 186 TRP A 189 ASP A 211 SITE 4 AC1 13 LYS A 215 SITE 1 AC2 5 ALA A 67 TYR A 81 PHE A 88 PHE A 89 SITE 2 AC2 5 OLB A 304 SITE 1 AC3 3 GLY A 64 GLY A 65 ILE A 85 SITE 1 AC4 4 TYR A 81 PHE A 88 MET A 121 CLR A 302 SITE 1 AC5 1 VAL A 147 SITE 1 AC6 2 SER A 206 LEU A 210 CRYST1 78.078 78.078 143.951 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012808 0.007395 0.000000 0.00000 SCALE2 0.000000 0.014789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006947 0.00000