HEADER TRANSFERASE 02-JUL-18 6GYW TITLE CRYSTAL STRUCTURE OF DACA FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIADENYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAC,CYCLIC-DI-AMP SYNTHASE,C-DI-AMP SYNTHASE; COMPND 5 EC: 2.7.7.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: DACA, C7J94_12115; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-DI-AMP, DIADENYLATE CYCLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOSI,P.S.FREEMONT,A.GRUNDLING REVDAT 3 17-JAN-24 6GYW 1 REMARK REVDAT 2 30-JAN-19 6GYW 1 JRNL REVDAT 1 23-JAN-19 6GYW 0 JRNL AUTH T.TOSI,F.HOSHIGA,C.MILLERSHIP,R.SINGH,C.ELDRID,D.PATIN, JRNL AUTH 2 D.MENGIN-LECREULX,K.THALASSINOS,P.FREEMONT,A.GRUNDLING JRNL TITL INHIBITION OF THE STAPHYLOCOCCUS AUREUS C-DI-AMP CYCLASE JRNL TITL 2 DACA BY DIRECT INTERACTION WITH THE PHOSPHOGLUCOSAMINE JRNL TITL 3 MUTASE GLMM. JRNL REF PLOS PATHOG. V. 15 07537 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 30668586 JRNL DOI 10.1371/JOURNAL.PPAT.1007537 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0128 - 3.8917 1.00 2732 145 0.1604 0.1760 REMARK 3 2 3.8917 - 3.0890 1.00 2604 147 0.1756 0.1836 REMARK 3 3 3.0890 - 2.6986 1.00 2569 136 0.1890 0.2465 REMARK 3 4 2.6986 - 2.4519 1.00 2574 134 0.1767 0.2370 REMARK 3 5 2.4519 - 2.2761 1.00 2507 148 0.1694 0.1945 REMARK 3 6 2.2761 - 2.1419 1.00 2543 137 0.1650 0.1888 REMARK 3 7 2.1419 - 2.0347 1.00 2534 142 0.1736 0.2157 REMARK 3 8 2.0347 - 1.9461 1.00 2542 119 0.1742 0.2117 REMARK 3 9 1.9461 - 1.8712 1.00 2539 127 0.1807 0.2293 REMARK 3 10 1.8712 - 1.8066 1.00 2517 126 0.1868 0.2261 REMARK 3 11 1.8066 - 1.7501 1.00 2486 134 0.2130 0.2501 REMARK 3 12 1.7501 - 1.7001 0.98 2502 121 0.2314 0.2528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2362 REMARK 3 ANGLE : 0.962 3191 REMARK 3 CHIRALITY : 0.038 375 REMARK 3 PLANARITY : 0.004 408 REMARK 3 DIHEDRAL : 13.595 873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5435 10.4745 14.9016 REMARK 3 T TENSOR REMARK 3 T11: 0.2241 T22: 0.1820 REMARK 3 T33: 0.1664 T12: 0.0326 REMARK 3 T13: 0.0215 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.8660 L22: 3.1195 REMARK 3 L33: 4.6729 L12: 0.4050 REMARK 3 L13: -0.1620 L23: 0.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.1263 S12: -0.0584 S13: 0.3826 REMARK 3 S21: -0.0126 S22: 0.0256 S23: 0.2026 REMARK 3 S31: -0.5712 S32: -0.1456 S33: -0.1357 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5896 -2.5076 19.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.2596 REMARK 3 T33: 0.2484 T12: -0.0100 REMARK 3 T13: -0.0068 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.3121 L22: 3.1369 REMARK 3 L33: 2.9068 L12: 1.4444 REMARK 3 L13: 2.3756 L23: 0.0658 REMARK 3 S TENSOR REMARK 3 S11: 0.1532 S12: 0.0267 S13: -0.5042 REMARK 3 S21: -0.2324 S22: 0.0662 S23: 0.0023 REMARK 3 S31: 0.3805 S32: -0.1664 S33: -0.2038 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2331 2.9478 10.2552 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.3258 REMARK 3 T33: 0.2659 T12: 0.0279 REMARK 3 T13: -0.0516 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 4.5791 L22: 3.4981 REMARK 3 L33: 5.5795 L12: 1.5713 REMARK 3 L13: -0.1159 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: 0.2472 S13: -0.0402 REMARK 3 S21: -0.2789 S22: 0.0179 S23: 0.1317 REMARK 3 S31: -0.0867 S32: -0.5606 S33: 0.0287 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2977 -7.6695 34.6619 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.2109 REMARK 3 T33: 0.4382 T12: -0.0284 REMARK 3 T13: -0.0993 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 8.2439 L22: 5.4681 REMARK 3 L33: 9.7931 L12: -0.0208 REMARK 3 L13: -2.1423 L23: -0.0778 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: -0.4962 S13: -0.9003 REMARK 3 S21: 0.2680 S22: 0.0739 S23: 0.1250 REMARK 3 S31: 0.9350 S32: -0.0534 S33: 0.0509 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0203 0.3449 27.6754 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.3051 REMARK 3 T33: 0.2632 T12: 0.0160 REMARK 3 T13: -0.0121 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 7.1438 L22: 6.7092 REMARK 3 L33: 1.1062 L12: -0.8375 REMARK 3 L13: -0.7540 L23: 1.1186 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: 0.6928 S13: -0.5199 REMARK 3 S21: -0.5152 S22: -0.0129 S23: -0.4310 REMARK 3 S31: -0.1949 S32: 0.4930 S33: -0.0046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1389 6.7829 30.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2028 REMARK 3 T33: 0.2467 T12: 0.0327 REMARK 3 T13: -0.0561 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 5.6108 L22: 2.8239 REMARK 3 L33: 3.5247 L12: 0.5099 REMARK 3 L13: 2.2029 L23: 0.2825 REMARK 3 S TENSOR REMARK 3 S11: -0.2309 S12: 0.1255 S13: 0.3352 REMARK 3 S21: -0.0421 S22: 0.0205 S23: 0.0042 REMARK 3 S31: -0.2142 S32: -0.1409 S33: 0.1583 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5788 12.2675 30.2128 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.4135 REMARK 3 T33: 0.5561 T12: -0.0655 REMARK 3 T13: -0.0545 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 6.7438 L22: 2.3393 REMARK 3 L33: 2.8948 L12: 1.2344 REMARK 3 L13: 1.9185 L23: 0.4004 REMARK 3 S TENSOR REMARK 3 S11: -0.1634 S12: 0.9057 S13: 0.4635 REMARK 3 S21: -0.1988 S22: 0.0667 S23: -0.8247 REMARK 3 S31: -0.1716 S32: 0.8907 S33: 0.2658 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1272 10.6491 32.7583 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.1954 REMARK 3 T33: 0.2719 T12: -0.0888 REMARK 3 T13: -0.1279 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 8.6196 L22: 5.2528 REMARK 3 L33: 8.8509 L12: 1.1685 REMARK 3 L13: 2.1609 L23: 2.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.5565 S12: -0.1250 S13: 0.5413 REMARK 3 S21: 0.1102 S22: 0.0719 S23: 0.0867 REMARK 3 S31: -0.0018 S32: 0.2903 S33: 0.1658 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6063 2.9985 33.6078 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.2473 REMARK 3 T33: 0.2215 T12: -0.0162 REMARK 3 T13: -0.0632 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 5.2703 L22: 4.4162 REMARK 3 L33: 6.1776 L12: -0.5457 REMARK 3 L13: 0.3380 L23: 2.3105 REMARK 3 S TENSOR REMARK 3 S11: -0.2407 S12: 0.3596 S13: 0.1328 REMARK 3 S21: -0.1474 S22: -0.0394 S23: -0.1828 REMARK 3 S31: -0.2942 S32: 0.3902 S33: 0.2541 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7398 1.6187 38.2333 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.3070 REMARK 3 T33: 0.2850 T12: 0.0066 REMARK 3 T13: -0.0880 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 8.0345 L22: 2.1644 REMARK 3 L33: 5.6786 L12: -1.1426 REMARK 3 L13: 0.5187 L23: 1.7816 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: -0.1204 S13: 0.4264 REMARK 3 S21: 0.3588 S22: -0.1123 S23: -0.3627 REMARK 3 S31: -0.1822 S32: 0.4766 S33: -0.0012 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 247 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7620 -4.2532 42.2604 REMARK 3 T TENSOR REMARK 3 T11: 0.3171 T22: 0.3667 REMARK 3 T33: 0.3194 T12: -0.0303 REMARK 3 T13: -0.0513 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 2.3644 L22: 6.2094 REMARK 3 L33: 4.9265 L12: -3.7374 REMARK 3 L13: -0.0549 L23: -0.3964 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: -0.8929 S13: -0.7864 REMARK 3 S21: 0.3098 S22: 0.2120 S23: 0.2704 REMARK 3 S31: 0.4348 S32: 0.0394 S33: 0.0506 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 68.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RV7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LICL, 0.1M NA-CACODYLATE PH 6.5, REMARK 280 30% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.39950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.39800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.39800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.39950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 HIS A 97 REMARK 465 MET A 98 REMARK 465 ALA A 99 REMARK 465 SER A 100 REMARK 465 PHE A 101 REMARK 465 LEU A 102 REMARK 465 LYS A 103 REMARK 465 ARG A 104 REMARK 465 TYR A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 ASN A 108 REMARK 465 THR A 109 REMARK 465 LYS A 203 REMARK 465 THR A 261 REMARK 465 ARG A 262 REMARK 465 PHE A 263 REMARK 465 GLN A 264 REMARK 465 LYS A 265 REMARK 465 LYS A 266 REMARK 465 GLY A 267 REMARK 465 VAL A 268 REMARK 465 LYS A 269 REMARK 465 GLY B 95 REMARK 465 SER B 96 REMARK 465 HIS B 97 REMARK 465 MET B 98 REMARK 465 ALA B 99 REMARK 465 SER B 100 REMARK 465 PHE B 101 REMARK 465 LEU B 102 REMARK 465 LYS B 103 REMARK 465 ARG B 104 REMARK 465 TYR B 105 REMARK 465 THR B 106 REMARK 465 SER B 107 REMARK 465 ASN B 108 REMARK 465 THR B 109 REMARK 465 TYR B 110 REMARK 465 ARG B 262 REMARK 465 PHE B 263 REMARK 465 GLN B 264 REMARK 465 LYS B 265 REMARK 465 LYS B 266 REMARK 465 GLY B 267 REMARK 465 VAL B 268 REMARK 465 LYS B 269 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 112 CD CE NZ REMARK 480 LYS A 116 CG CD CE NZ REMARK 480 LYS A 123 CD CE NZ REMARK 480 LYS A 130 NZ REMARK 480 LYS A 141 CD CE NZ REMARK 480 GLN A 146 CG CD OE1 NE2 REMARK 480 GLU A 150 CG CD OE1 OE2 REMARK 480 LYS A 200 CB CG CD CE NZ REMARK 480 ASP A 238 CG OD1 OD2 REMARK 480 LYS A 240 CD CE NZ REMARK 480 ARG A 242 CD NE REMARK 480 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 480 SER B 111 CB OG REMARK 480 LYS B 112 CB CG CD CE NZ REMARK 480 ASP B 113 CB CG OD1 OD2 REMARK 480 GLU B 115 CG CD OE1 OE2 REMARK 480 LYS B 116 CG CD CE NZ REMARK 480 LYS B 123 CE NZ REMARK 480 LYS B 130 CG CD CE NZ REMARK 480 TYR B 192 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR B 192 OH REMARK 480 LYS B 200 CB CG CD CE NZ REMARK 480 SER B 202 CB OG REMARK 480 LYS B 203 CG CD CE NZ REMARK 480 SER B 204 CB OG REMARK 480 LYS B 240 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 SER A 216 O HOH A 302 1.21 REMARK 500 HG3 GLN B 146 O HOH B 366 1.39 REMARK 500 OE1 GLU A 217 O HOH A 301 1.48 REMARK 500 O HOH A 353 O HOH A 361 1.49 REMARK 500 O HOH B 348 O HOH B 350 1.51 REMARK 500 O HOH A 327 O HOH A 369 1.92 REMARK 500 O HOH A 302 O HOH A 331 1.96 REMARK 500 O HOH B 345 O HOH B 364 2.10 REMARK 500 N ASP A 238 O HOH A 302 2.13 REMARK 500 CB SER A 216 O HOH A 302 2.13 REMARK 500 O HOH B 335 O HOH B 341 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 340 O HOH B 360 4456 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 141 -115.44 -118.98 REMARK 500 MET A 155 -53.47 -123.74 REMARK 500 LYS B 141 -112.18 -119.81 REMARK 500 MET B 155 -51.77 -121.60 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6GYW A 100 269 UNP A0A2P7CAT2_STAAU DBREF2 6GYW A A0A2P7CAT2 100 269 DBREF1 6GYW B 100 269 UNP A0A2P7CAT2_STAAU DBREF2 6GYW B A0A2P7CAT2 100 269 SEQADV 6GYW GLY A 95 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW SER A 96 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW HIS A 97 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW MET A 98 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW ALA A 99 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW GLY B 95 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW SER B 96 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW HIS B 97 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW MET B 98 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYW ALA B 99 UNP A0A2P7CAT EXPRESSION TAG SEQRES 1 A 175 GLY SER HIS MET ALA SER PHE LEU LYS ARG TYR THR SER SEQRES 2 A 175 ASN THR TYR SER LYS ASP GLU GLU LYS LEU ILE GLN SER SEQRES 3 A 175 VAL SER LYS ALA VAL GLN TYR MET ALA LYS ARG ARG ILE SEQRES 4 A 175 GLY ALA LEU ILE VAL PHE GLU LYS GLU THR GLY LEU GLN SEQRES 5 A 175 ASP TYR ILE GLU THR GLY ILE ALA MET ASP SER ASN ILE SEQRES 6 A 175 SER GLN GLU LEU LEU ILE ASN VAL PHE ILE PRO ASN THR SEQRES 7 A 175 PRO LEU HIS ASP GLY ALA MET ILE ILE GLN GLY THR LYS SEQRES 8 A 175 ILE ALA ALA ALA ALA SER TYR LEU PRO LEU SER ASP SER SEQRES 9 A 175 PRO LYS ILE SER LYS SER LEU GLY THR ARG HIS ARG ALA SEQRES 10 A 175 ALA VAL GLY ILE SER GLU VAL SER ASP ALA PHE THR VAL SEQRES 11 A 175 ILE VAL SER GLU GLU THR GLY ASP ILE SER VAL THR PHE SEQRES 12 A 175 ASP GLY LYS LEU ARG ARG ASP ILE SER ASN GLU ILE PHE SEQRES 13 A 175 GLU GLU LEU LEU ALA GLU HIS TRP PHE GLY THR ARG PHE SEQRES 14 A 175 GLN LYS LYS GLY VAL LYS SEQRES 1 B 175 GLY SER HIS MET ALA SER PHE LEU LYS ARG TYR THR SER SEQRES 2 B 175 ASN THR TYR SER LYS ASP GLU GLU LYS LEU ILE GLN SER SEQRES 3 B 175 VAL SER LYS ALA VAL GLN TYR MET ALA LYS ARG ARG ILE SEQRES 4 B 175 GLY ALA LEU ILE VAL PHE GLU LYS GLU THR GLY LEU GLN SEQRES 5 B 175 ASP TYR ILE GLU THR GLY ILE ALA MET ASP SER ASN ILE SEQRES 6 B 175 SER GLN GLU LEU LEU ILE ASN VAL PHE ILE PRO ASN THR SEQRES 7 B 175 PRO LEU HIS ASP GLY ALA MET ILE ILE GLN GLY THR LYS SEQRES 8 B 175 ILE ALA ALA ALA ALA SER TYR LEU PRO LEU SER ASP SER SEQRES 9 B 175 PRO LYS ILE SER LYS SER LEU GLY THR ARG HIS ARG ALA SEQRES 10 B 175 ALA VAL GLY ILE SER GLU VAL SER ASP ALA PHE THR VAL SEQRES 11 B 175 ILE VAL SER GLU GLU THR GLY ASP ILE SER VAL THR PHE SEQRES 12 B 175 ASP GLY LYS LEU ARG ARG ASP ILE SER ASN GLU ILE PHE SEQRES 13 B 175 GLU GLU LEU LEU ALA GLU HIS TRP PHE GLY THR ARG PHE SEQRES 14 B 175 GLN LYS LYS GLY VAL LYS FORMUL 3 HOH *148(H2 O) HELIX 1 AA1 SER A 111 ARG A 132 1 22 HELIX 2 AA2 LEU A 145 GLU A 150 1 6 HELIX 3 AA3 SER A 160 PHE A 168 1 9 HELIX 4 AA4 GLY A 206 VAL A 218 1 13 HELIX 5 AA5 SER A 246 GLY A 260 1 15 HELIX 6 AA6 LYS B 112 ARG B 132 1 21 HELIX 7 AA7 LEU B 145 GLU B 150 1 6 HELIX 8 AA8 SER B 160 ILE B 169 1 10 HELIX 9 AA9 GLY B 206 VAL B 218 1 13 HELIX 10 AB1 SER B 246 PHE B 259 1 14 SHEET 1 AA1 7 ILE A 153 ASN A 158 0 SHEET 2 AA1 7 LYS A 185 SER A 191 -1 O ALA A 189 N ILE A 153 SHEET 3 AA1 7 ALA A 178 GLN A 182 -1 N ALA A 178 O SER A 191 SHEET 4 AA1 7 ALA A 135 PHE A 139 1 N VAL A 138 O ILE A 181 SHEET 5 AA1 7 PHE A 222 VAL A 226 -1 O PHE A 222 N PHE A 139 SHEET 6 AA1 7 ILE A 233 PHE A 237 -1 O SER A 234 N ILE A 225 SHEET 7 AA1 7 LYS A 240 ARG A 242 -1 O ARG A 242 N VAL A 235 SHEET 1 AA2 7 ILE B 153 ASN B 158 0 SHEET 2 AA2 7 LYS B 185 SER B 191 -1 O ALA B 189 N ILE B 153 SHEET 3 AA2 7 ALA B 178 GLN B 182 -1 N ALA B 178 O SER B 191 SHEET 4 AA2 7 ALA B 135 PHE B 139 1 N VAL B 138 O ILE B 181 SHEET 5 AA2 7 PHE B 222 VAL B 226 -1 O PHE B 222 N PHE B 139 SHEET 6 AA2 7 ILE B 233 PHE B 237 -1 O SER B 234 N ILE B 225 SHEET 7 AA2 7 LYS B 240 ARG B 242 -1 O ARG B 242 N VAL B 235 CRYST1 54.799 68.190 76.796 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018248 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013021 0.00000