data_6GZ6 # _entry.id 6GZ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GZ6 pdb_00006gz6 10.2210/pdb6gz6/pdb WWPDB D_1200010765 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-24 2 'Structure model' 1 1 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.value' 10 2 'Structure model' '_struct_conn.pdbx_dist_value' 11 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GZ6 _pdbx_database_status.recvd_initial_deposition_date 2018-07-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bakalar, B.' 1 ? 'Heddi, B.' 2 ? 'Schmitt, E.' 3 ? 'Mechulam, Y.' 4 ? 'Phan, A.T.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 58 _citation.language ? _citation.page_first 2331 _citation.page_last 2335 _citation.title 'A Minimal Sequence for Left-Handed G-Quadruplex Formation.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201812628 _citation.pdbx_database_id_PubMed 30481397 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bakalar, B.' 1 ? primary 'Heddi, B.' 2 ? primary 'Schmitt, E.' 3 ? primary 'Mechulam, Y.' 4 ? primary 'Phan, A.T.' 5 0000-0002-4970-3861 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (27-MER)' 8568.456 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DT)(DG)(DG)(DT)(DG)(DG)(DT)(DG)(DG)(DT)(DG)(DT)(DT)(DG)(DT)(DG)(DG)(DT)(DG) (DG)(DT)(DG)(DG)(DT)(DG)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can GTGGTGGTGGTGTTGTGGTGGTGGTGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DG n 1 13 DT n 1 14 DT n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DT n 1 20 DG n 1 21 DG n 1 22 DT n 1 23 DG n 1 24 DG n 1 25 DT n 1 26 DG n 1 27 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DT 25 25 25 DT DT A . n A 1 26 DG 26 26 26 DG DG A . n A 1 27 DT 27 27 27 DT DT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 2 K 1 103 3 K K A . E 3 HOH 1 201 11 HOH HOH A . E 3 HOH 2 202 2 HOH HOH A . E 3 HOH 3 203 7 HOH HOH A . E 3 HOH 4 204 9 HOH HOH A . E 3 HOH 5 205 1 HOH HOH A . E 3 HOH 6 206 8 HOH HOH A . E 3 HOH 7 207 4 HOH HOH A . E 3 HOH 8 208 10 HOH HOH A . E 3 HOH 9 209 5 HOH HOH A . E 3 HOH 10 210 3 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6GZ6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.570 _cell.length_a_esd ? _cell.length_b 37.630 _cell.length_b_esd ? _cell.length_c 54.280 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GZ6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.76 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40% MPD, 12mM Spermine, 80mM KCl, 20mM BaCl2, 40mM NaCacodylate pH7.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-16 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.999996 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 12.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.999996 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 12.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6GZ6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 31 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4341 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.percent_possible_obs 98.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.13 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.95 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 646 _reflns_shell.percent_possible_all 93.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13.4 _reflns_shell.pdbx_Rsym_value 0.668 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.958 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GZ6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.006 _refine.ls_d_res_low 30.925 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4285 _refine.ls_number_reflns_R_free 199 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.26 _refine.ls_percent_reflns_R_free 4.64 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1869 _refine.ls_R_factor_R_free 0.2308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1849 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4M5U _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.78 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.06 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 569 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 582 _refine_hist.d_res_high 2.006 _refine_hist.d_res_low 30.925 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 638 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.997 ? 990 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 38.396 ? 266 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 107 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 27 ? f_plane_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.0062 _refine_ls_shell.d_res_low 30.9290 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 199 _refine_ls_shell.number_reflns_R_work 4086 _refine_ls_shell.percent_reflns_obs 98.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2308 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1849 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6GZ6 _struct.title 'Structure of a left-handed G-quadruplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GZ6 _struct_keywords.text 'G-quadruplex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6GZ6 _struct_ref.pdbx_db_accession 6GZ6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GZ6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6GZ6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 27 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 630 ? 1 MORE -1 ? 1 'SSA (A^2)' 3900 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1 A K 102 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? A DG 1 A K 103 1_555 ? ? ? ? ? ? ? 2.966 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 102 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.883 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 D K . K ? ? A DG 4 A K 103 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc6 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 6 A K 102 1_555 ? ? ? ? ? ? ? 2.907 ? ? metalc7 metalc ? ? A DG 7 O6 ? ? ? 1_555 C K . K ? ? A DG 7 A K 102 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc8 metalc ? ? A DG 7 O6 ? ? ? 1_555 D K . K ? ? A DG 7 A K 103 1_555 ? ? ? ? ? ? ? 2.808 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 102 1_555 ? ? ? ? ? ? ? 2.914 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.870 ? ? metalc11 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? A DG 10 A K 103 1_555 ? ? ? ? ? ? ? 2.883 ? ? metalc12 metalc ? ? A DG 12 O6 ? ? ? 1_555 C K . K ? ? A DG 12 A K 102 1_555 ? ? ? ? ? ? ? 2.903 ? ? metalc13 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 101 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc14 metalc ? ? A DG 15 O6 ? ? ? 1_555 D K . K ? ? A DG 15 A K 103 1_555 ? ? ? ? ? ? ? 2.863 ? ? metalc15 metalc ? ? A DG 17 O6 ? ? ? 1_555 B K . K ? ? A DG 17 A K 101 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc16 metalc ? ? A DG 18 O6 ? ? ? 1_555 B K . K ? ? A DG 18 A K 101 1_555 ? ? ? ? ? ? ? 2.878 ? ? metalc17 metalc ? ? A DG 18 O6 ? ? ? 1_555 D K . K ? ? A DG 18 A K 103 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc18 metalc ? ? A DG 20 O6 ? ? ? 1_555 B K . K ? ? A DG 20 A K 101 1_555 ? ? ? ? ? ? ? 2.882 ? ? metalc19 metalc ? ? A DG 21 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 101 1_555 ? ? ? ? ? ? ? 3.020 ? ? metalc20 metalc ? ? A DG 21 O6 ? ? ? 1_555 D K . K ? ? A DG 21 A K 103 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc21 metalc ? ? A DG 23 O6 ? ? ? 1_555 B K . K ? ? A DG 23 A K 101 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc22 metalc ? ? A DG 24 O6 ? ? ? 1_555 B K . K ? ? A DG 24 A K 101 1_555 ? ? ? ? ? ? ? 2.960 ? ? metalc23 metalc ? ? A DG 24 O6 ? ? ? 1_555 D K . K ? ? A DG 24 A K 103 1_555 ? ? ? ? ? ? ? 2.960 ? ? metalc24 metalc ? ? A DG 26 O6 ? ? ? 1_555 B K . K ? ? A DG 26 A K 101 1_555 ? ? ? ? ? ? ? 2.684 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 4 O6 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 4 N7 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DG 1 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 1 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 3 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 3 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 4 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 4 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 6 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 6 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 7 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 7 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 9 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 9 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 15 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 15 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 15 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 17 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 17 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 17 N7 ? ? ? 1_555 A DG 26 N2 ? ? A DG 17 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DG 26 N1 ? ? A DG 17 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 21 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 21 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 21 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 21 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 23 N1 ? ? ? 1_555 A DG 26 O6 ? ? A DG 23 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 23 N2 ? ? ? 1_555 A DG 26 N7 ? ? A DG 23 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 94.3 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 70.6 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 79.8 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 156.4 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 67.7 ? 6 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 90.5 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 104.7 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 130.2 ? 9 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 64.7 ? 10 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 78.3 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 134.1 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 105.5 ? 13 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 152.6 ? 14 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 67.9 ? 15 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 93.5 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 69.4 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 159.6 ? 18 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 104.9 ? 19 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 131.2 ? 20 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 68.0 ? 21 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 79.7 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 78.2 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 68.4 ? 24 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 133.1 ? 25 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 107.1 ? 26 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 160.0 ? 27 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 71.8 ? 28 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 95.5 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 68.0 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 102.6 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 65.2 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 67.1 ? 33 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 103.7 ? 34 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 68.8 ? 35 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 91.0 ? 36 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 152.1 ? 37 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 140.4 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 83.4 ? 39 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 151.7 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 138.1 ? 41 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 85.5 ? 42 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 91.6 ? 43 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 67.2 ? 44 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 136.8 ? 45 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 81.5 ? 46 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 90.7 ? 47 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 153.3 ? 48 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 104.5 ? 49 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 69.1 ? 50 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 82.7 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 88.8 ? 52 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 148.1 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 139.1 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 69.8 ? 55 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 104.9 ? 56 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 66.2 ? 57 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 92.6 ? 58 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 67.3 ? 59 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 78.0 ? 60 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 152.9 ? 61 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 68.5 ? 62 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 89.3 ? 63 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 102.3 ? 64 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 130.8 ? 65 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 65.8 ? 66 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 78.4 ? 67 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 133.8 ? 68 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 109.5 ? 69 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 155.1 ? 70 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 72.6 ? 71 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 93.3 ? 72 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 70.9 ? 73 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 161.0 ? 74 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 102.9 ? 75 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 130.2 ? 76 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 64.2 ? 77 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 77.8 ? 78 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 74.8 ? 79 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 73.6 ? 80 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 130.9 ? 81 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 115.4 ? 82 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 155.5 ? 83 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 73.4 ? 84 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 92.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A K 102 ? 9 'binding site for residue K A 102' AC3 Software A K 103 ? 10 'binding site for residue K A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 15 ? DG A 15 . ? 1_555 ? 2 AC1 9 DG A 17 ? DG A 17 . ? 1_555 ? 3 AC1 9 DG A 18 ? DG A 18 . ? 1_555 ? 4 AC1 9 DG A 20 ? DG A 20 . ? 1_555 ? 5 AC1 9 DG A 21 ? DG A 21 . ? 1_555 ? 6 AC1 9 DG A 23 ? DG A 23 . ? 1_555 ? 7 AC1 9 DG A 24 ? DG A 24 . ? 1_555 ? 8 AC1 9 DG A 26 ? DG A 26 . ? 1_555 ? 9 AC1 9 K D . ? K A 103 . ? 1_555 ? 10 AC2 9 DG A 1 ? DG A 1 . ? 1_555 ? 11 AC2 9 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ? 13 AC2 9 DG A 6 ? DG A 6 . ? 1_555 ? 14 AC2 9 DG A 7 ? DG A 7 . ? 1_555 ? 15 AC2 9 DG A 9 ? DG A 9 . ? 1_555 ? 16 AC2 9 DG A 10 ? DG A 10 . ? 1_555 ? 17 AC2 9 DG A 12 ? DG A 12 . ? 1_555 ? 18 AC2 9 K D . ? K A 103 . ? 1_555 ? 19 AC3 10 DG A 1 ? DG A 1 . ? 1_555 ? 20 AC3 10 DG A 4 ? DG A 4 . ? 1_555 ? 21 AC3 10 DG A 7 ? DG A 7 . ? 1_555 ? 22 AC3 10 DG A 10 ? DG A 10 . ? 1_555 ? 23 AC3 10 DG A 15 ? DG A 15 . ? 1_555 ? 24 AC3 10 DG A 18 ? DG A 18 . ? 1_555 ? 25 AC3 10 DG A 21 ? DG A 21 . ? 1_555 ? 26 AC3 10 DG A 24 ? DG A 24 . ? 1_555 ? 27 AC3 10 K B . ? K A 101 . ? 1_555 ? 28 AC3 10 K C . ? K A 102 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6GZ6 'double helix' 6GZ6 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 6 1_555 A DG 9 1_555 1.674 3.260 -0.049 -10.319 5.235 -90.443 1 A_DG6:DG9_A A 6 ? A 9 ? 6 3 1 A DG 7 1_555 A DG 10 1_555 1.602 3.439 0.012 -4.815 2.516 -91.703 2 A_DG7:DG10_A A 7 ? A 10 ? 6 3 1 A DG 4 1_555 A DG 1 1_555 -1.662 -3.528 0.042 2.581 -1.752 88.160 3 A_DG4:DG1_A A 4 ? A 1 ? 6 3 1 A DG 12 1_555 A DG 3 1_555 1.697 3.389 -0.102 -8.199 6.668 -89.740 4 A_DG12:DG3_A A 12 ? A 3 ? 6 3 1 A DG 17 1_555 A DG 20 1_555 1.585 3.295 -0.006 -4.732 4.855 -92.478 5 A_DG17:DG20_A A 17 ? A 20 ? 6 3 1 A DG 18 1_555 A DG 21 1_555 1.536 3.529 -0.006 -0.646 -0.742 -89.533 6 A_DG18:DG21_A A 18 ? A 21 ? 6 3 1 A DG 15 1_555 A DG 24 1_555 -1.645 -3.637 0.030 4.680 1.168 87.475 7 A_DG15:DG24_A A 15 ? A 24 ? 6 3 1 A DG 26 1_555 A DG 23 1_555 -1.705 -3.473 -0.332 5.638 9.136 90.968 8 A_DG26:DG23_A A 26 ? A 23 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 6 1_555 A DG 9 1_555 A DG 7 1_555 A DG 10 1_555 -0.651 -0.707 -3.393 2.012 2.845 24.754 -0.739 0.872 -3.491 6.595 -4.664 24.994 1 AA_DG6DG7:DG10DG9_AA A 6 ? A 9 ? A 7 ? A 10 ? 1 A DG 7 1_555 A DG 10 1_555 A DG 4 1_555 A DG 1 1_555 1.528 3.478 0.066 -4.814 1.158 -179.691 -1.739 0.764 0.066 -0.579 -2.407 -179.691 2 AA_DG7DG4:DG1DG10_AA A 7 ? A 10 ? A 4 ? A 1 ? 1 A DG 4 1_555 A DG 1 1_555 A DG 12 1_555 A DG 3 1_555 0.656 0.865 3.424 -2.626 -1.777 -25.457 -1.413 0.688 3.524 4.012 -5.929 -25.650 3 AA_DG4DG12:DG3DG1_AA A 4 ? A 1 ? A 12 ? A 3 ? 1 A DG 17 1_555 A DG 20 1_555 A DG 18 1_555 A DG 21 1_555 -0.661 -0.871 -3.408 2.130 0.735 24.529 -1.804 0.862 -3.476 1.725 -5.001 24.631 4 AA_DG17DG18:DG21DG20_AA A 17 ? A 20 ? A 18 ? A 21 ? 1 A DG 18 1_555 A DG 21 1_555 A DG 15 1_555 A DG 24 1_555 -1.458 -3.550 -0.015 1.690 -0.372 179.444 -1.775 0.729 -0.015 -0.186 -0.845 179.444 5 AA_DG18DG15:DG24DG21_AA A 18 ? A 21 ? A 15 ? A 24 ? 1 A DG 15 1_555 A DG 24 1_555 A DG 26 1_555 A DG 23 1_555 0.255 0.741 3.366 -3.534 1.466 -25.275 -2.104 -0.458 3.323 -3.326 -8.019 -25.558 6 AA_DG15DG26:DG23DG24_AA A 15 ? A 24 ? A 26 ? A 23 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education (Singapore)' Singapore MOE2015-T2-1-092 1 'Ministry of Education (Singapore)' Singapore MOE2012-T3-1-001 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4M5U _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6GZ6 _atom_sites.fract_transf_matrix[1][1] 0.033818 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026575 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018423 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_