HEADER STRUCTURAL PROTEIN 03-JUL-18 6GZ8 TITLE FIRST GERMN DOMAIN OF THE SPORULATION PROTEIN GERM FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE GERMINATION PROTEIN GERM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: GERM, BSU28380; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCR282 KEYWDS GERM, GERMN DOMAIN, LIPOPROTEIN, SPORULATION, ENDOSPORES, SECRETION KEYWDS 2 SYSTEMS, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TROUVE,A.MOHAMED,F.LEISICO,C.CONTRERAS-MARTEL,B.LIU,C.MAS, AUTHOR 2 D.Z.RUDNER,C.D.A.RODRIGUES,C.MORLOT REVDAT 3 15-MAY-24 6GZ8 1 LINK REVDAT 2 26-DEC-18 6GZ8 1 JRNL REVDAT 1 10-OCT-18 6GZ8 0 JRNL AUTH J.TROUVE,A.MOHAMED,F.LEISICO,C.CONTRERAS-MARTEL,B.LIU,C.MAS, JRNL AUTH 2 D.Z.RUDNER,C.D.A.RODRIGUES,C.MORLOT JRNL TITL STRUCTURAL CHARACTERIZATION OF THE SPORULATION PROTEIN GERM JRNL TITL 2 FROM BACILLUS SUBTILIS. JRNL REF J. STRUCT. BIOL. V. 204 481 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 30266596 JRNL DOI 10.1016/J.JSB.2018.09.010 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 67101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1738 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4626 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.806 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1090 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1056 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1480 ; 1.333 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2476 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 6.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;33.944 ;26.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 209 ;12.294 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;17.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 173 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1190 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 190 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 541 ; 2.136 ; 1.012 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 540 ; 1.621 ; 1.007 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 677 ; 2.378 ; 1.526 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 678 ; 2.506 ; 1.530 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 549 ; 6.039 ; 1.436 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 549 ; 6.027 ; 1.436 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 799 ; 6.053 ; 1.990 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1307 ; 6.477 ;15.592 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1308 ; 6.477 ;15.600 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2146 ; 7.131 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 109 ;30.209 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2225 ;12.613 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68958 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LARGE 3D NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE 21% PEG 3350, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.18000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.43050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.80050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.43050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.18000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.80050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 209 REMARK 465 ILE A 210 REMARK 465 ASN A 211 REMARK 465 LEU A 212 REMARK 465 GLU A 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 155 34.50 -94.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 584 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 HOH A 559 O 98.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 87 O REMARK 620 2 HOH A 460 O 134.7 REMARK 620 3 HOH A 514 O 118.2 95.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 98 O REMARK 620 2 GLN A 106 OE1 78.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 99 O REMARK 620 2 SER A 176 O 57.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 101 O REMARK 620 2 THR A 103 OG1 144.8 REMARK 620 3 HOH A 496 O 92.5 94.5 REMARK 620 4 HOH A 523 O 104.0 69.2 162.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 140 O REMARK 620 2 SER A 177 O 114.3 REMARK 620 3 HOH A 423 O 126.7 118.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 159 OE2 REMARK 620 2 HOH A 503 O 133.2 REMARK 620 3 HOH A 580 O 115.9 70.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 173 O REMARK 620 2 PHE A 175 O 97.6 REMARK 620 3 ILE A 178 O 91.3 84.8 REMARK 620 4 HOH A 520 O 86.4 84.4 168.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 536 O REMARK 620 2 HOH A 556 O 92.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 DBREF 6GZ8 A 76 213 UNP P39072 GERM_BACSU 76 213 SEQRES 1 A 138 THR VAL MET ARG GLU LEU TYR LEU ILE ASP LYS ASN GLY SEQRES 2 A 138 TYR VAL VAL ALA GLN THR LEU PRO LEU PRO LYS SER GLU SEQRES 3 A 138 SER THR ALA LYS GLN ALA LEU GLU TYR LEU VAL GLN GLY SEQRES 4 A 138 GLY PRO VAL SER GLU ILE LEU PRO ASN GLY PHE ARG ALA SEQRES 5 A 138 VAL LEU PRO ALA ASP THR THR VAL ASN VAL ASP ILE LYS SEQRES 6 A 138 LYS ASP GLY THR ALA ILE ALA ASP PHE SER ASN GLU PHE SEQRES 7 A 138 LYS ASN TYR LYS LYS GLU ASP GLU GLN LYS ILE VAL GLN SEQRES 8 A 138 SER VAL THR TRP THR LEU THR GLN PHE SER SER ILE ASP SEQRES 9 A 138 LYS VAL LYS LEU ARG ILE ASN GLY HIS GLU LEU LYS GLU SEQRES 10 A 138 MET PRO VAL GLY GLY THR PRO ILE SER ASP ASP LEU SER SEQRES 11 A 138 ARG LYS ASP GLY ILE ASN LEU GLU HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET NA A 311 1 HET EDO A 312 10 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA 11(NA 1+) FORMUL 13 EDO C2 H6 O2 FORMUL 14 HOH *184(H2 O) HELIX 1 AA1 SER A 102 TYR A 110 1 9 HELIX 2 AA2 GLY A 115 LEU A 121 5 7 HELIX 3 AA3 ASN A 151 ASN A 155 5 5 HELIX 4 AA4 LYS A 157 GLU A 159 5 3 HELIX 5 AA5 ASP A 160 GLN A 174 1 15 SHEET 1 AA1 2 VAL A 77 ILE A 84 0 SHEET 2 AA1 2 VAL A 90 LEU A 97 -1 O LEU A 97 N VAL A 77 SHEET 1 AA2 4 VAL A 135 ILE A 139 0 SHEET 2 AA2 4 THR A 144 PHE A 149 -1 O ILE A 146 N ASP A 138 SHEET 3 AA2 4 LYS A 180 ILE A 185 1 O ARG A 184 N PHE A 149 SHEET 4 AA2 4 HIS A 188 GLU A 189 -1 O HIS A 188 N ILE A 185 LINK OD2 ASP A 85 NA NA A 308 1555 1555 2.67 LINK O ASN A 87 NA NA A 302 1555 1555 2.66 LINK O PRO A 98 NA NA A 310 1555 1555 2.88 LINK O LYS A 99 NA NA A 303 1555 1555 2.84 LINK O LYS A 99 NA NA A 304 1555 1555 2.76 LINK O GLU A 101 NA NA A 305 1555 1555 3.15 LINK OG1 THR A 103 NA NA A 305 1555 1555 3.01 LINK OE1 GLN A 106 NA NA A 310 1555 1555 2.73 LINK O LYS A 140 NA NA A 309 1555 1555 2.72 LINK OE2 GLU A 159 NA NA A 311 1555 1555 2.71 LINK O THR A 173 NA NA A 301 1555 1555 2.40 LINK O PHE A 175 NA NA A 301 1555 1555 2.38 LINK O SER A 176 NA NA A 304 1555 4465 2.88 LINK O SER A 177 NA NA A 309 1555 1555 2.72 LINK O ILE A 178 NA NA A 301 1555 1555 2.33 LINK NA NA A 301 O HOH A 520 1555 1555 2.44 LINK NA NA A 302 O HOH A 460 1555 1555 2.76 LINK NA NA A 302 O HOH A 514 1555 3644 2.70 LINK NA NA A 305 O HOH A 496 1555 1555 3.07 LINK NA NA A 305 O HOH A 523 1555 1555 3.18 LINK NA NA A 306 O HOH A 536 1555 1555 2.96 LINK NA NA A 306 O HOH A 556 1555 1555 3.00 LINK NA NA A 307 O HOH A 559 1555 1555 2.85 LINK NA NA A 308 O HOH A 559 1555 1555 2.88 LINK NA NA A 309 O HOH A 423 1555 4465 2.66 LINK NA NA A 311 O HOH A 503 1555 3644 2.73 LINK NA NA A 311 O HOH A 580 1555 1555 3.10 SITE 1 AC1 6 THR A 173 PHE A 175 ILE A 178 NA A 303 SITE 2 AC1 6 NA A 304 HOH A 520 SITE 1 AC2 3 ASN A 87 HOH A 460 HOH A 514 SITE 1 AC3 5 LYS A 99 THR A 173 ILE A 178 NA A 301 SITE 2 AC3 5 NA A 304 SITE 1 AC4 6 LYS A 99 PHE A 175 SER A 176 ILE A 178 SITE 2 AC4 6 NA A 301 NA A 303 SITE 1 AC5 4 GLU A 101 SER A 102 THR A 103 HOH A 496 SITE 1 AC6 5 GLN A 113 PRO A 130 ALA A 131 HOH A 536 SITE 2 AC6 5 HOH A 556 SITE 1 AC7 6 ASP A 85 LYS A 86 ASN A 123 GLY A 124 SITE 2 AC7 6 PHE A 125 HOH A 559 SITE 1 AC8 2 ASP A 85 HOH A 559 SITE 1 AC9 5 ILE A 139 LYS A 140 GLY A 143 SER A 177 SITE 2 AC9 5 HOH A 423 SITE 1 AD1 4 VAL A 77 ARG A 79 PRO A 98 GLN A 106 SITE 1 AD2 4 LYS A 105 ASN A 136 GLU A 159 HOH A 503 SITE 1 AD3 4 ASP A 148 LYS A 157 GLU A 159 HOH A 432 CRYST1 38.360 53.601 64.861 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015418 0.00000