data_6GZK # _entry.id 6GZK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6GZK WWPDB D_1200010680 BMRB 26842 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 26842 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6GZK _pdbx_database_status.recvd_initial_deposition_date 2018-07-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Duchardt-Ferner, E.' 1 ? 'Ohlenschlager, O.' 2 ? 'Kreutz, C.R.' 3 ? 'Wohnert, J.' 4 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 48 ? 949 961 'Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine.' 2020 ? 10.1093/nar/gkz1113 31754719 ? ? ? ? ? ? ? ? NE ? ? 1 'Biomol NMR Assign' ? ? 1874-270X ? ? 11 ? 29 34 ;NMR resonance assignments for the tetramethylrhodamine binding RNA aptamer 3 in complex with the ligand 5-carboxy-tetramethylrhodamine. ; 2017 ? 10.1007/s12104-016-9715-6 27730489 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Duchardt-Ferner, E.' 1 ? primary 'Juen, M.' 2 ? primary 'Bourgeois, B.' 3 ? primary 'Madl, T.' 4 ? primary 'Kreutz, C.' 5 ? primary 'Ohlenschlager, O.' 6 ? primary 'Wohnert, J.' 7 ? 1 'Duchardt-Ferner, E.' 8 ? 1 'Juen, M.' 9 ? 1 'Kreutz, C.' 10 ? 1 'Wohnert, J.' 11 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6GZK _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TMR3 (48-MER)' 15494.229 1 ? ? ? ? 2 non-polymer syn '5-carboxy methylrhodamine' 431.461 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACGACUGAACCGAAAGGUUCUUGGCUGCUUCGGCAGAGGUACGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACGACUGAACCGAAAGGUUCUUGGCUGCUUCGGCAGAGGUACGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 G n 1 6 A n 1 7 C n 1 8 U n 1 9 G n 1 10 A n 1 11 A n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 U n 1 22 C n 1 23 U n 1 24 U n 1 25 G n 1 26 G n 1 27 C n 1 28 U n 1 29 G n 1 30 C n 1 31 U n 1 32 U n 1 33 C n 1 34 G n 1 35 G n 1 36 C n 1 37 A n 1 38 G n 1 39 A n 1 40 G n 1 41 G n 1 42 U n 1 43 A n 1 44 C n 1 45 G n 1 46 U n 1 47 C n 1 48 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 48 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6GZK _struct_ref.pdbx_db_accession 6GZK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GZK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 48 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6GZK _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 48 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 48 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 FH8 non-polymer . '5-carboxy methylrhodamine' ? 'C25 H23 N2 O5 1' 431.461 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 NOESY 5 isotropic 2 2 2 '3D 1H-13C NOESY aromatic' 5 isotropic 3 2 2 '3D 1H-13C NOESY aliphatic' 5 isotropic 13 2 9 '3D f1-13C,15N filtered 1H-13C NOESY aliphatic' 4 isotropic 4 2 8 '3D f1-13C,15N filtered 1H-13C NOESY aromatic' 4 isotropic 5 2 6 '3D 1H-13C NOESY aliphatic' 4 isotropic 9 2 5 '3D 1H-13C NOESY aromatic' 4 isotropic 8 2 7 '3D 1H-13C NOESY aliphatic' 5 isotropic 7 2 2 'f1,f2 filter NOESY' 4 isotropic 10 2 3 HNN-COSY 1 isotropic 11 2 3 'SELLR HNN-COSY' 1 isotropic 12 2 3 'Amino HNN-COSY' 1 isotropic 14 1 3 '15N-1H CPMG NOESY' 4 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 bar 1 7.2 '130 mM Na-Glutamate, 10 mM NaCl' '130 mM Na-Glutamate, 10 mM NaCl' ? mM 'Glutamate buffer 283K' ? pH* ? ? K 2 298 bar 1 7.2 '130 mM Na-Glutamate, 10 mM NaCl' '130 mM Na-Glutamate, 10 mM NaCl' ? mM 'Glutamate buffer 298K' ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.2 mM unlabeled TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' unlabeled_sample solution ? 2 '1.2 mM [U-13C; U-15N] TMR-3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' 13C-15N_sample_H2O solution ? 9 '1.2 mM [U-13C; U-15N] TMR-3_48nt, 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' 13C-15N_sample_D2O solution ? 3 '1.2 mM [U-15N] TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_sample solution ? 4 '1.2 mM [U-13C; U-15N]-Ade,Cyt TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' A-C-13C-15N_sample_H2O solution ? 5 '1.2 mM [U-13C; U-15N]-Gua,Ura TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' G-U-13C-15N_sample_H2O solution ? 6 '1.2 mM [U-13C; U-15N]-Ade,Cyt TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' A-C-13C-15N_sample_D2O solution ? 7 '1.2 mM [U-13C; U-15N]-Gua,Ura TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' G-U-13C-15N_sample_D2O solution ? 8 '1.2 mM [U-13C; U-15N]-Ade TMR3 (48-MER), 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' A-13C-15N_sample_D2O solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 'Cryogenic H,C,N triple resonance probe' 4 AVANCE ? Bruker 900 'Cryogenic H,C,N triple resonance probe' 5 AVANCE ? Bruker 950 'Cryogenic H,C,N triple resonance probe' # _pdbx_nmr_refine.entry_id 6GZK _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6GZK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6GZK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 2 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 3 processing TopSpin ? 'Bruker Biospin' 4 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 5 'peak picking' CARA ? 'Keller and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GZK _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6GZK _struct.title 'Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA' _struct.pdbx_descriptor 'TMR3 (48-MER)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GZK _struct_keywords.text 'RNA Aptamer, RNA-Ligand complex, three-way junction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 1 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 1 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 1 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 3 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 3 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 4 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 4 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 4 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 5 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 5 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 5 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 6 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 6 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 7 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 7 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 7 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A A 43 N6 ? ? A C 7 A A 43 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog21 hydrog ? ? A U 8 N3 ? ? ? 1_555 A U 23 O2 ? ? A U 8 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog22 hydrog ? ? A U 8 O4 ? ? ? 1_555 A U 23 N3 ? ? A U 8 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 11 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 11 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 16 N7 ? ? A G 14 A A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog37 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog38 hydrog ? ? A G 25 O6 ? ? ? 1_555 A G 40 N2 ? ? A G 25 A G 40 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? hydrog39 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 26 A A 39 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog40 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 26 A A 39 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog41 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 27 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 27 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 27 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 28 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 28 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 30 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 30 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 30 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A U 31 O2 ? ? ? 1_555 A G 34 N1 ? ? A U 31 A G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog53 hydrog ? ? A G 41 N2 ? ? ? 1_555 A A 43 N1 ? ? A G 41 A A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FH8 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue FH8 A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 C A 7 ? C A 7 . ? 1_555 ? 2 AC1 8 U A 8 ? U A 8 . ? 1_555 ? 3 AC1 8 U A 24 ? U A 24 . ? 1_555 ? 4 AC1 8 G A 25 ? G A 25 . ? 1_555 ? 5 AC1 8 G A 26 ? G A 26 . ? 1_555 ? 6 AC1 8 G A 40 ? G A 40 . ? 1_555 ? 7 AC1 8 G A 41 ? G A 41 . ? 1_555 ? 8 AC1 8 A A 43 ? A A 43 . ? 1_555 ? # _database_PDB_matrix.entry_id 6GZK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6GZK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 G 29 29 29 G G A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 U 32 32 32 U U A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 C 36 36 36 C C A . n A 1 37 A 37 37 37 A A A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 A 43 43 43 A A A . n A 1 44 C 44 44 44 C C A . n A 1 45 G 45 45 45 G G A . n A 1 46 U 46 46 46 U U A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FH8 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 49 _pdbx_nonpoly_scheme.pdb_mon_id FH8 _pdbx_nonpoly_scheme.auth_mon_id TMR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 8420 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-17 2 'Structure model' 1 1 2019-12-04 3 'Structure model' 1 2 2020-01-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_pdbx_nmr_spectrometer.model' 11 3 'Structure model' '_citation.journal_volume' 12 3 'Structure model' '_citation.page_first' 13 3 'Structure model' '_citation.page_last' 14 3 'Structure model' '_citation.year' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'TMR3 (48-MER)' 1.2 ? mM unlabeled 1 5-TAMRA 1.4 ? mM unlabeled 2 TMR-3_48nt 1.2 ? mM '[U-13C; U-15N]' 2 5-TAMRA 1.4 ? mM unlabeled 9 TMR-3_48nt 1.2 ? mM '[U-13C; U-15N]' 9 5-TAMRA 1.4 ? mM unlabeled 3 'TMR3 (48-MER)' 1.2 ? mM '[U-15N]' 3 5-TAMRA 1.4 ? mM unlabeled 4 'TMR3 (48-MER)' 1.2 ? mM '[U-13C; U-15N]-Ade,Cyt' 4 5-TAMRA 1.4 ? mM unlabeled 5 'TMR3 (48-MER)' 1.2 ? mM '[U-13C; U-15N]-Gua,Ura' 5 5-TAMRA 1.4 ? mM unlabeled 6 'TMR3 (48-MER)' 1.2 ? mM '[U-13C; U-15N]-Ade,Cyt' 6 5-TAMRA 1.4 ? mM unlabeled 7 'TMR3 (48-MER)' 1.2 ? mM '[U-13C; U-15N]-Gua,Ura' 7 5-TAMRA 1.4 ? mM unlabeled 8 'TMR3 (48-MER)' 1.2 ? mM '[U-13C; U-15N]-Ade' 8 5-TAMRA 1.4 ? mM unlabeled # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 7 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 33 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 33 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 33 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 105.49 _pdbx_validate_rmsd_angle.angle_target_value 109.70 _pdbx_validate_rmsd_angle.angle_deviation -4.21 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6GZK 'double helix' 6GZK 'a-form double helix' 6GZK tetraloop 6GZK 'bulge loop' 6GZK 'mismatched base pair' 6GZK 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 48 1_555 -0.769 -0.217 0.608 36.487 -7.864 -2.046 1 A_G1:C48_A A 1 ? A 48 ? 19 1 1 A G 2 1_555 A C 47 1_555 -0.186 -0.154 -0.176 -0.211 -20.930 1.529 2 A_G2:C47_A A 2 ? A 47 ? 19 1 1 A A 3 1_555 A U 46 1_555 0.255 -0.184 0.845 -13.950 6.873 -2.347 3 A_A3:U46_A A 3 ? A 46 ? 20 1 1 A C 4 1_555 A G 45 1_555 0.714 -0.366 0.643 -4.999 -10.272 -5.459 4 A_C4:G45_A A 4 ? A 45 ? 19 1 1 A G 5 1_555 A C 44 1_555 0.155 -0.089 0.096 5.254 -18.918 1.085 5 A_G5:C44_A A 5 ? A 44 ? 19 1 1 A A 6 1_555 A U 42 1_555 0.460 -0.259 1.071 1.376 -16.854 -17.041 6 A_A6:U42_A A 6 ? A 42 ? 20 1 1 A C 7 1_555 A G 41 1_555 0.181 -0.165 0.146 4.039 13.290 -1.210 7 A_C7:G41_A A 7 ? A 41 ? 19 1 1 A G 25 1_555 A G 40 1_555 -4.250 1.543 0.427 11.088 -3.655 -3.490 8 A_G25:G40_A A 25 ? A 40 ? ? 1 1 A G 26 1_555 A A 39 1_555 -0.729 1.431 0.238 31.929 -13.976 -21.603 9 A_G26:A39_A A 26 ? A 39 ? 8 1 1 A C 27 1_555 A G 38 1_555 0.135 -0.146 0.053 14.403 -32.669 -0.953 10 A_C27:G38_A A 27 ? A 38 ? 19 1 1 A U 28 1_555 A A 37 1_555 0.528 -0.181 0.654 -19.546 -11.456 -2.021 11 A_U28:A37_A A 28 ? A 37 ? 20 1 1 A G 29 1_555 A C 36 1_555 -0.225 -0.193 0.601 5.228 -17.450 -5.339 12 A_G29:C36_A A 29 ? A 36 ? 19 1 1 A C 30 1_555 A G 35 1_555 0.434 -0.484 0.803 -4.251 -20.635 -10.560 13 A_C30:G35_A A 30 ? A 35 ? 19 1 1 A U 31 1_555 A G 34 1_555 0.418 -5.791 1.000 -19.802 -4.590 -113.006 14 A_U31:G34_A A 31 ? A 34 ? ? 6 1 A U 8 1_555 A U 23 1_555 -1.872 -1.781 -0.458 -13.036 -22.468 19.032 15 A_U8:U23_A A 8 ? A 23 ? 16 1 1 A G 9 1_555 A C 22 1_555 0.238 -0.079 0.102 -19.010 -5.578 -1.468 16 A_G9:C22_A A 9 ? A 22 ? 19 1 1 A A 10 1_555 A U 21 1_555 0.689 -0.158 0.777 2.518 -7.450 -4.169 17 A_A10:U21_A A 10 ? A 21 ? 20 1 1 A A 11 1_555 A U 20 1_555 0.094 -0.168 0.728 11.979 -21.905 -11.989 18 A_A11:U20_A A 11 ? A 20 ? 20 1 1 A C 12 1_555 A G 19 1_555 0.243 -0.267 0.556 9.088 -24.209 -6.997 19 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A C 13 1_555 A G 18 1_555 -0.129 -0.156 0.659 9.525 -6.559 0.344 20 A_C13:G18_A A 13 ? A 18 ? 19 1 1 A G 14 1_555 A A 17 1_555 6.717 -5.319 1.438 -6.549 -2.134 -24.968 21 A_G14:A17_A A 14 ? A 17 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 48 1_555 A G 2 1_555 A C 47 1_555 0.614 -1.709 4.057 2.138 31.559 38.569 -4.594 -0.560 2.178 40.527 -2.745 49.496 1 AA_G1G2:C47C48_AA A 1 ? A 48 ? A 2 ? A 47 ? 1 A G 2 1_555 A C 47 1_555 A A 3 1_555 A U 46 1_555 -0.137 -2.237 3.402 -9.186 8.358 34.067 -4.741 -1.033 2.740 13.713 15.072 36.197 2 AA_G2A3:U46C47_AA A 2 ? A 47 ? A 3 ? A 46 ? 1 A A 3 1_555 A U 46 1_555 A C 4 1_555 A G 45 1_555 -0.390 -1.773 3.038 2.408 9.271 37.892 -3.619 0.834 2.524 14.005 -3.638 39.040 3 AA_A3C4:G45U46_AA A 3 ? A 46 ? A 4 ? A 45 ? 1 A C 4 1_555 A G 45 1_555 A G 5 1_555 A C 44 1_555 0.320 -1.507 2.572 7.101 14.275 23.782 -5.260 0.449 1.484 30.622 -15.233 28.568 4 AA_C4G5:C44G45_AA A 4 ? A 45 ? A 5 ? A 44 ? 1 A G 5 1_555 A C 44 1_555 A A 6 1_555 A U 42 1_555 1.091 -1.569 3.113 -0.481 29.850 54.658 -2.720 -1.083 2.078 30.138 0.485 61.723 5 AA_G5A6:U42C44_AA A 5 ? A 44 ? A 6 ? A 42 ? 1 A A 6 1_555 A U 42 1_555 A C 7 1_555 A G 41 1_555 1.962 -0.798 3.578 11.831 -9.389 29.391 0.586 -0.948 4.110 -17.151 -21.613 32.969 6 AA_A6C7:G41U42_AA A 6 ? A 42 ? A 7 ? A 41 ? 1 A C 7 1_555 A G 41 1_555 A G 25 1_555 A G 40 1_555 1.865 -1.294 6.342 -4.022 11.483 -37.070 -0.886 1.807 6.601 -17.493 -6.127 -38.949 7 AA_C7G25:G40G41_AA A 7 ? A 41 ? A 25 ? A 40 ? 1 A G 25 1_555 A G 40 1_555 A G 26 1_555 A A 39 1_555 -0.899 -1.217 2.753 -5.026 0.218 36.809 -1.935 0.836 2.840 0.343 7.913 37.139 8 AA_G25G26:A39G40_AA A 25 ? A 40 ? A 26 ? A 39 ? 1 A G 26 1_555 A A 39 1_555 A C 27 1_555 A G 38 1_555 0.677 -1.939 3.542 -6.692 13.700 43.636 -3.636 -1.431 2.721 17.796 8.693 46.101 9 AA_G26C27:G38A39_AA A 26 ? A 39 ? A 27 ? A 38 ? 1 A C 27 1_555 A G 38 1_555 A U 28 1_555 A A 37 1_555 -0.237 -1.991 3.869 1.157 21.430 44.050 -4.146 0.381 2.679 26.770 -1.445 48.765 10 AA_C27U28:A37G38_AA A 27 ? A 38 ? A 28 ? A 37 ? 1 A U 28 1_555 A A 37 1_555 A G 29 1_555 A C 36 1_555 -0.301 -1.188 2.535 4.424 6.483 24.204 -4.044 1.601 2.065 14.965 -10.214 25.426 11 AA_U28G29:C36A37_AA A 28 ? A 37 ? A 29 ? A 36 ? 1 A G 29 1_555 A C 36 1_555 A C 30 1_555 A G 35 1_555 -0.470 -1.479 3.478 -2.019 20.729 34.713 -4.384 0.464 2.297 31.486 3.067 40.316 12 AA_G29C30:G35C36_AA A 29 ? A 36 ? A 30 ? A 35 ? 1 A C 30 1_555 A G 35 1_555 A U 31 1_555 A G 34 1_555 -0.639 -1.377 3.433 -3.567 3.845 110.607 -0.885 0.343 3.413 2.338 2.169 110.691 13 AA_C30U31:G34G35_AA A 30 ? A 35 ? A 31 ? A 34 ? 1 A U 8 1_555 A U 23 1_555 A G 9 1_555 A C 22 1_555 -0.953 -1.247 3.355 -2.075 5.632 36.711 -2.710 1.217 3.183 8.868 3.267 37.181 14 AA_U8G9:C22U23_AA A 8 ? A 23 ? A 9 ? A 22 ? 1 A G 9 1_555 A C 22 1_555 A A 10 1_555 A U 21 1_555 0.219 -1.819 2.519 -0.275 1.243 29.687 -3.745 -0.471 2.440 2.425 0.536 29.714 15 AA_G9A10:U21C22_AA A 9 ? A 22 ? A 10 ? A 21 ? 1 A A 10 1_555 A U 21 1_555 A A 11 1_555 A U 20 1_555 -0.380 -1.859 2.815 0.339 -1.287 31.821 -3.183 0.747 2.882 -2.346 -0.619 31.849 16 AA_A10A11:U20U21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A A 11 1_555 A U 20 1_555 A C 12 1_555 A G 19 1_555 -0.054 -1.761 3.098 -1.286 1.794 35.194 -3.156 -0.090 3.008 2.963 2.124 35.261 17 AA_A11C12:G19U20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A C 13 1_555 A G 18 1_555 0.234 -1.815 3.193 -0.748 8.071 34.152 -4.118 -0.492 2.702 13.507 1.252 35.072 18 AA_C12C13:G18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -3.335 -1.545 3.814 -2.248 11.064 65.610 -1.916 2.940 3.642 10.132 2.059 66.468 19 AA_C13G14:A17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'SFB 902' _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '5-carboxy methylrhodamine' _pdbx_entity_nonpoly.comp_id FH8 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ;Fluorescence spectroscopy NMR titrations ; #