data_6GZR # _entry.id 6GZR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GZR pdb_00006gzr 10.2210/pdb6gzr/pdb WWPDB D_1200010794 ? ? BMRB 26842 ? 10.13018/BMR26842 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-17 2 'Structure model' 1 1 2019-12-04 3 'Structure model' 1 2 2020-01-22 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' citation 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_pdbx_nmr_spectrometer.model' 11 3 'Structure model' '_citation.journal_volume' 12 3 'Structure model' '_citation.page_first' 13 3 'Structure model' '_citation.page_last' 14 3 'Structure model' '_citation.year' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6GZR _pdbx_database_status.recvd_initial_deposition_date 2018-07-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 26842 unspecified PDB 'different conformer' 6GCK unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Duchardt-Ferner, E.' 1 ? 'Ohlenschlager, O.' 2 ? 'Kreutz, C.R.' 3 ? 'Wohnert, J.' 4 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 48 ? 949 961 'Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine.' 2020 ? 10.1093/nar/gkz1113 31754719 ? ? ? ? ? ? ? ? NE ? ? 1 'Biomol NMR Assign' ? ? 1874-270X ? ? 11 ? 29 34 ;NMR resonance assignments for the tetramethylrhodamine binding RNA aptamer 3 in complex with the ligand 5-carboxy-tetramethylrhodamine. ; 2017 ? 10.1007/s12104-016-9715-6 27730489 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Duchardt-Ferner, E.' 1 ? primary 'Juen, M.' 2 ? primary 'Bourgeois, B.' 3 ? primary 'Madl, T.' 4 ? primary 'Kreutz, C.' 5 ? primary 'Ohlenschlager, O.' 6 ? primary 'Wohnert, J.' 7 ? 1 'Duchardt-Ferner, E.' 8 ? 1 'Juen, M.' 9 ? 1 'Kreutz, C.' 10 ? 1 'Wohnert, J.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tetramethylrhodamine aptamer' 15494.229 1 ? ? ? ? 2 non-polymer syn '5-carboxy methylrhodamine' 431.461 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACGACUGAACCGAAAGGUUCUUGGCUGCUUCGGCAGAGGUACGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACGACUGAACCGAAAGGUUCUUGGCUGCUUCGGCAGAGGUACGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '5-carboxy methylrhodamine' _pdbx_entity_nonpoly.comp_id FH8 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 G n 1 6 A n 1 7 C n 1 8 U n 1 9 G n 1 10 A n 1 11 A n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 U n 1 22 C n 1 23 U n 1 24 U n 1 25 G n 1 26 G n 1 27 C n 1 28 U n 1 29 G n 1 30 C n 1 31 U n 1 32 U n 1 33 C n 1 34 G n 1 35 G n 1 36 C n 1 37 A n 1 38 G n 1 39 A n 1 40 G n 1 41 G n 1 42 U n 1 43 A n 1 44 C n 1 45 G n 1 46 U n 1 47 C n 1 48 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 48 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'aptamer from SELEX' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 FH8 non-polymer . '5-carboxy methylrhodamine' ? 'C25 H23 N2 O5 1' 431.461 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 G 29 29 29 G G A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 U 32 32 32 U U A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 C 36 36 36 C C A . n A 1 37 A 37 37 37 A A A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 A 43 43 43 A A A . n A 1 44 C 44 44 44 C C A . n A 1 45 G 45 45 45 G G A . n A 1 46 U 46 46 46 U U A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FH8 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 49 _pdbx_nonpoly_scheme.pdb_mon_id FH8 _pdbx_nonpoly_scheme.auth_mon_id TMR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6GZR _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GZR _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _database_PDB_matrix.entry_id 6GZR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 6GZR _struct.title 'Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GZR _struct_keywords.text 'RNA Aptamer, RNA-Ligand complex, three-way junction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6GZR _struct_ref.pdbx_db_accession 6GZR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GZR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 48 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6GZR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 48 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 48 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 8400 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ;Fluorescence spectroscopy NMR titrations ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 1 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 1 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 1 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 3 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 3 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 4 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 4 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 4 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 5 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 5 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 5 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 6 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 6 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 7 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 7 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 7 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A A 43 N6 ? ? A C 7 A A 43 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A U 8 N3 ? ? ? 1_555 A U 23 O2 ? ? A U 8 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog22 hydrog ? ? A U 8 O4 ? ? ? 1_555 A U 23 N3 ? ? A U 8 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 11 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 11 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 16 N7 ? ? A G 14 A A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 25 O6 ? ? ? 1_555 A G 40 N2 ? ? A G 25 A G 40 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 26 A A 39 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog40 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 26 A A 39 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog41 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 27 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 27 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 27 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 28 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 28 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 30 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 30 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 30 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 31 O2 ? ? ? 1_555 A G 34 N1 ? ? A U 31 A G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog53 hydrog ? ? A G 41 N2 ? ? ? 1_555 A A 43 N7 ? ? A G 41 A A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A U 42 O2 ? ? ? 1_555 A C 44 N4 ? ? A U 42 A C 44 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FH8 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue FH8 A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 C A 7 ? C A 7 . ? 1_555 ? 2 AC1 8 U A 8 ? U A 8 . ? 1_555 ? 3 AC1 8 U A 24 ? U A 24 . ? 1_555 ? 4 AC1 8 G A 25 ? G A 25 . ? 1_555 ? 5 AC1 8 G A 26 ? G A 26 . ? 1_555 ? 6 AC1 8 G A 40 ? G A 40 . ? 1_555 ? 7 AC1 8 G A 41 ? G A 41 . ? 1_555 ? 8 AC1 8 A A 43 ? A A 43 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A C 33 ? ? "O4'" A C 33 ? ? "C4'" A C 33 ? ? 105.48 109.70 -4.22 0.70 N 2 4 "C1'" A G 41 ? ? "O4'" A G 41 ? ? "C4'" A G 41 ? ? 105.33 109.70 -4.37 0.70 N # _pdbx_nmr_ensemble.entry_id 6GZR _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6GZR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.2 mM unlabeled TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' unlabeled_sample solution ? 2 '1.2 mM [U-13C; U-15N] TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' 13C-15N_sample_H2O solution ? 3 '1.2 mM [U-15N] TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_sample solution ? 4 '1.2 mM [U-13C; U-15N]-Ade,Cyt TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' A,C-13C-15N_sample_H2O solution ? 5 '1.2 mM [U-13C; U-15N]-Gua,Ura TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' G,U-13C-15N_sample_H2O solution ? 6 '1.2 mM [U-13C; U-15N]-Ade,Cyt TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' A,C-13C-15N_sample_D2O solution ? 7 '1.2 mM [U-13C; U-15N]-Gua,Ura TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' G,U-13C-15N_sample_D2O solution ? 8 '1.2 mM [U-13C; U-15N]-Ade TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 95% H2O/5% D2O' '95% H2O/5% D2O' A-13C-15N-sample_H2O solution ? 9 '1.2 mM [U-13C; U-15N] TMR3_48nt, 1.4 mM unlabeled 5-TAMRA, 100% D2O' '100% D2O' 13C-15N_sample_D2O solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 TMR3_48nt 1.2 ? mM unlabeled 1 5-TAMRA 1.4 ? mM unlabeled 2 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]' 2 5-TAMRA 1.4 ? mM unlabeled 3 TMR3_48nt 1.2 ? mM '[U-15N]' 3 5-TAMRA 1.4 ? mM unlabeled 4 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]-Ade,Cyt' 4 5-TAMRA 1.4 ? mM unlabeled 5 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]-Gua,Ura' 5 5-TAMRA 1.4 ? mM unlabeled 6 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]-Ade,Cyt' 6 5-TAMRA 1.4 ? mM unlabeled 7 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]-Gua,Ura' 7 5-TAMRA 1.4 ? mM unlabeled 8 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]-Ade' 8 5-TAMRA 1.4 ? mM unlabeled 9 TMR3_48nt 1.2 ? mM '[U-13C; U-15N]' 9 5-TAMRA 1.4 ? mM unlabeled # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 bar 1 7.5 '130 mM K-Glutamate, 15 mM' ? ? mM 'Glutamate buffer 283K' ? pH ? ? K 2 298 bar 1 7.5 '130 mM K-Glutamate, 15 mM NaCl' ? ? mM 'Glutamate buffer 298 K' ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 NOESY 3 isotropic 2 2 2 '3D 1H-13C NOESY aromatic' 3 isotropic 3 2 2 '3D 1H-13C NOESY aliphatic' 3 isotropic 13 2 9 '3D f1-13C,15N filtered 1H,13C NOESYHSQC' 2 isotropic 4 2 8 '3D f1-13C,15N filtered 1H,13C NOESYHSQC' 2 isotropic 5 2 6 '3D 1H-13C NOESY aliphatic' 2 isotropic 9 2 5 '3D 1H-13C NOESY aromatic' 2 isotropic 8 2 7 '3D 1H-13C NOESY aliphatic' 3 isotropic 7 2 2 'f1,f2 filtered NOESY' 1 isotropic 10 2 3 HNN-COSY 2 isotropic 11 2 3 'SELLR HNN-COSY' 2 isotropic 12 2 3 'Amino HNN-COSY' 2 isotropic 14 1 3 '15N-1H CPMG-NOESY' 2 isotropic # _pdbx_nmr_refine.entry_id 6GZR _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 2 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 3 collection TopSpin ? 'Bruker Biospin' 4 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 5 'peak picking' CARA ? 'Keller and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 FH8 O3 O N N 73 FH8 O5 O N N 74 FH8 OE O N N 75 FH8 C02 C N N 76 FH8 O2 O N N 77 FH8 C13 C Y N 78 FH8 C14 C Y N 79 FH8 C15 C Y N 80 FH8 C03 C N N 81 FH8 O4 O N N 82 FH8 C16 C Y N 83 FH8 C11 C Y N 84 FH8 C12 C Y N 85 FH8 C01 C N N 86 FH8 C34 C N N 87 FH8 C33 C N N 88 FH8 C32 C N N 89 FH8 C31 C N N 90 FH8 N2 N N N 91 FH8 C311 C N N 92 FH8 C321 C N N 93 FH8 C36 C N N 94 FH8 C35 C N N 95 FH8 C25 C Y N 96 FH8 C26 C Y N 97 FH8 C21 C Y N 98 FH8 N3 N N N 99 FH8 C211 C N N 100 FH8 C221 C N N 101 FH8 C22 C Y N 102 FH8 C23 C Y N 103 FH8 C24 C Y N 104 FH8 H1 H N N 105 FH8 H2 H N N 106 FH8 H14 H N N 107 FH8 H16 H N N 108 FH8 H11 H N N 109 FH8 H33 H N N 110 FH8 H32 H N N 111 FH8 H313 H N N 112 FH8 H311 H N N 113 FH8 H312 H N N 114 FH8 H321 H N N 115 FH8 H322 H N N 116 FH8 H323 H N N 117 FH8 H36 H N N 118 FH8 H26 H N N 119 FH8 H211 H N N 120 FH8 H212 H N N 121 FH8 H213 H N N 122 FH8 H221 H N N 123 FH8 H222 H N N 124 FH8 H223 H N N 125 FH8 H22 H N N 126 FH8 H23 H N N 127 G OP3 O N N 128 G P P N N 129 G OP1 O N N 130 G OP2 O N N 131 G "O5'" O N N 132 G "C5'" C N N 133 G "C4'" C N R 134 G "O4'" O N N 135 G "C3'" C N S 136 G "O3'" O N N 137 G "C2'" C N R 138 G "O2'" O N N 139 G "C1'" C N R 140 G N9 N Y N 141 G C8 C Y N 142 G N7 N Y N 143 G C5 C Y N 144 G C6 C N N 145 G O6 O N N 146 G N1 N N N 147 G C2 C N N 148 G N2 N N N 149 G N3 N N N 150 G C4 C Y N 151 G HOP3 H N N 152 G HOP2 H N N 153 G "H5'" H N N 154 G "H5''" H N N 155 G "H4'" H N N 156 G "H3'" H N N 157 G "HO3'" H N N 158 G "H2'" H N N 159 G "HO2'" H N N 160 G "H1'" H N N 161 G H8 H N N 162 G H1 H N N 163 G H21 H N N 164 G H22 H N N 165 U OP3 O N N 166 U P P N N 167 U OP1 O N N 168 U OP2 O N N 169 U "O5'" O N N 170 U "C5'" C N N 171 U "C4'" C N R 172 U "O4'" O N N 173 U "C3'" C N S 174 U "O3'" O N N 175 U "C2'" C N R 176 U "O2'" O N N 177 U "C1'" C N R 178 U N1 N N N 179 U C2 C N N 180 U O2 O N N 181 U N3 N N N 182 U C4 C N N 183 U O4 O N N 184 U C5 C N N 185 U C6 C N N 186 U HOP3 H N N 187 U HOP2 H N N 188 U "H5'" H N N 189 U "H5''" H N N 190 U "H4'" H N N 191 U "H3'" H N N 192 U "HO3'" H N N 193 U "H2'" H N N 194 U "HO2'" H N N 195 U "H1'" H N N 196 U H3 H N N 197 U H5 H N N 198 U H6 H N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 FH8 O4 C03 doub N N 76 FH8 C321 N2 sing N N 77 FH8 C03 O3 sing N N 78 FH8 C03 C15 sing N N 79 FH8 C16 C15 doub Y N 80 FH8 C16 C11 sing Y N 81 FH8 C32 C33 doub N N 82 FH8 C32 C31 sing N N 83 FH8 N2 C31 doub N N 84 FH8 N2 C311 sing N N 85 FH8 C15 C14 sing Y N 86 FH8 C33 C34 sing N N 87 FH8 C11 C12 doub Y N 88 FH8 C31 C36 sing N N 89 FH8 C14 C13 doub Y N 90 FH8 C34 C01 doub N N 91 FH8 C34 C35 sing N N 92 FH8 C12 C13 sing Y N 93 FH8 C12 C01 sing N N 94 FH8 C36 C35 doub N N 95 FH8 C13 C02 sing N N 96 FH8 C01 C24 sing N N 97 FH8 C35 O5 sing N N 98 FH8 O5 C25 sing N N 99 FH8 C02 O2 doub N N 100 FH8 C02 OE sing N N 101 FH8 C24 C25 doub Y N 102 FH8 C24 C23 sing Y N 103 FH8 C25 C26 sing Y N 104 FH8 C23 C22 doub Y N 105 FH8 C26 C21 doub Y N 106 FH8 C22 C21 sing Y N 107 FH8 C21 N3 sing N N 108 FH8 N3 C211 sing N N 109 FH8 N3 C221 sing N N 110 FH8 O3 H1 sing N N 111 FH8 OE H2 sing N N 112 FH8 C14 H14 sing N N 113 FH8 C16 H16 sing N N 114 FH8 C11 H11 sing N N 115 FH8 C33 H33 sing N N 116 FH8 C32 H32 sing N N 117 FH8 C311 H313 sing N N 118 FH8 C311 H311 sing N N 119 FH8 C311 H312 sing N N 120 FH8 C321 H321 sing N N 121 FH8 C321 H322 sing N N 122 FH8 C321 H323 sing N N 123 FH8 C36 H36 sing N N 124 FH8 C26 H26 sing N N 125 FH8 C211 H211 sing N N 126 FH8 C211 H212 sing N N 127 FH8 C211 H213 sing N N 128 FH8 C221 H221 sing N N 129 FH8 C221 H222 sing N N 130 FH8 C221 H223 sing N N 131 FH8 C22 H22 sing N N 132 FH8 C23 H23 sing N N 133 G OP3 P sing N N 134 G OP3 HOP3 sing N N 135 G P OP1 doub N N 136 G P OP2 sing N N 137 G P "O5'" sing N N 138 G OP2 HOP2 sing N N 139 G "O5'" "C5'" sing N N 140 G "C5'" "C4'" sing N N 141 G "C5'" "H5'" sing N N 142 G "C5'" "H5''" sing N N 143 G "C4'" "O4'" sing N N 144 G "C4'" "C3'" sing N N 145 G "C4'" "H4'" sing N N 146 G "O4'" "C1'" sing N N 147 G "C3'" "O3'" sing N N 148 G "C3'" "C2'" sing N N 149 G "C3'" "H3'" sing N N 150 G "O3'" "HO3'" sing N N 151 G "C2'" "O2'" sing N N 152 G "C2'" "C1'" sing N N 153 G "C2'" "H2'" sing N N 154 G "O2'" "HO2'" sing N N 155 G "C1'" N9 sing N N 156 G "C1'" "H1'" sing N N 157 G N9 C8 sing Y N 158 G N9 C4 sing Y N 159 G C8 N7 doub Y N 160 G C8 H8 sing N N 161 G N7 C5 sing Y N 162 G C5 C6 sing N N 163 G C5 C4 doub Y N 164 G C6 O6 doub N N 165 G C6 N1 sing N N 166 G N1 C2 sing N N 167 G N1 H1 sing N N 168 G C2 N2 sing N N 169 G C2 N3 doub N N 170 G N2 H21 sing N N 171 G N2 H22 sing N N 172 G N3 C4 sing N N 173 U OP3 P sing N N 174 U OP3 HOP3 sing N N 175 U P OP1 doub N N 176 U P OP2 sing N N 177 U P "O5'" sing N N 178 U OP2 HOP2 sing N N 179 U "O5'" "C5'" sing N N 180 U "C5'" "C4'" sing N N 181 U "C5'" "H5'" sing N N 182 U "C5'" "H5''" sing N N 183 U "C4'" "O4'" sing N N 184 U "C4'" "C3'" sing N N 185 U "C4'" "H4'" sing N N 186 U "O4'" "C1'" sing N N 187 U "C3'" "O3'" sing N N 188 U "C3'" "C2'" sing N N 189 U "C3'" "H3'" sing N N 190 U "O3'" "HO3'" sing N N 191 U "C2'" "O2'" sing N N 192 U "C2'" "C1'" sing N N 193 U "C2'" "H2'" sing N N 194 U "O2'" "HO2'" sing N N 195 U "C1'" N1 sing N N 196 U "C1'" "H1'" sing N N 197 U N1 C2 sing N N 198 U N1 C6 sing N N 199 U C2 O2 doub N N 200 U C2 N3 sing N N 201 U N3 C4 sing N N 202 U N3 H3 sing N N 203 U C4 O4 doub N N 204 U C4 C5 sing N N 205 U C5 C6 doub N N 206 U C5 H5 sing N N 207 U C6 H6 sing N N 208 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6GZR 'double helix' 6GZR 'a-form double helix' 6GZR tetraloop 6GZR 'bulge loop' 6GZR 'mismatched base pair' 6GZR 'internal loop' 6GZR 'quadruple helix' 6GZR 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 48 1_555 -0.785 -0.222 0.571 36.067 -8.194 -1.618 1 A_G1:C48_A A 1 ? A 48 ? 19 1 1 A G 2 1_555 A C 47 1_555 -0.104 -0.150 -0.207 -0.729 -20.827 1.430 2 A_G2:C47_A A 2 ? A 47 ? 19 1 1 A A 3 1_555 A U 46 1_555 0.320 -0.286 1.016 -13.971 5.011 -4.037 3 A_A3:U46_A A 3 ? A 46 ? 20 1 1 A C 4 1_555 A G 45 1_555 0.592 -0.458 0.969 -6.818 -10.732 -7.861 4 A_C4:G45_A A 4 ? A 45 ? 19 1 1 A G 5 1_555 A C 44 1_555 -0.005 -0.106 -0.015 -0.994 -23.817 1.517 5 A_G5:C44_A A 5 ? A 44 ? 19 1 1 A A 6 1_555 A U 42 1_555 0.934 -0.256 0.937 0.597 1.818 -6.489 6 A_A6:U42_A A 6 ? A 42 ? 20 1 1 A C 7 1_555 A G 41 1_555 0.398 -0.160 0.232 -0.005 18.666 3.767 7 A_C7:G41_A A 7 ? A 41 ? 19 1 1 A G 25 1_555 A G 40 1_555 -4.211 1.509 0.606 5.621 -0.457 -2.618 8 A_G25:G40_A A 25 ? A 40 ? ? 1 1 A G 26 1_555 A A 39 1_555 -0.522 1.466 0.447 32.365 -8.128 -20.819 9 A_G26:A39_A A 26 ? A 39 ? 8 1 1 A C 27 1_555 A G 38 1_555 0.241 -0.163 0.014 12.628 -32.340 -0.147 10 A_C27:G38_A A 27 ? A 38 ? 19 1 1 A U 28 1_555 A A 37 1_555 0.599 -0.187 0.609 -19.704 -10.396 -1.362 11 A_U28:A37_A A 28 ? A 37 ? 20 1 1 A G 29 1_555 A C 36 1_555 -0.226 -0.197 0.610 5.628 -17.473 -5.484 12 A_G29:C36_A A 29 ? A 36 ? 19 1 1 A C 30 1_555 A G 35 1_555 0.428 -0.496 0.834 -4.402 -20.709 -10.857 13 A_C30:G35_A A 30 ? A 35 ? 19 1 1 A U 31 1_555 A G 34 1_555 0.407 -5.780 1.016 -19.950 -4.676 -113.328 14 A_U31:G34_A A 31 ? A 34 ? ? 6 1 A U 8 1_555 A U 23 1_555 -1.906 -1.795 -0.340 -7.266 -29.420 21.668 15 A_U8:U23_A A 8 ? A 23 ? 16 1 1 A G 9 1_555 A C 22 1_555 0.306 -0.070 0.156 -18.615 -3.291 -0.322 16 A_G9:C22_A A 9 ? A 22 ? 19 1 1 A A 10 1_555 A U 21 1_555 0.654 -0.163 0.811 2.771 -6.651 -3.930 17 A_A10:U21_A A 10 ? A 21 ? 20 1 1 A A 11 1_555 A U 20 1_555 0.103 -0.173 0.747 11.602 -21.189 -12.149 18 A_A11:U20_A A 11 ? A 20 ? 20 1 1 A C 12 1_555 A G 19 1_555 0.227 -0.263 0.551 9.076 -24.357 -6.983 19 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A C 13 1_555 A G 18 1_555 -0.123 -0.153 0.656 9.483 -6.380 0.428 20 A_C13:G18_A A 13 ? A 18 ? 19 1 1 A G 14 1_555 A A 17 1_555 6.706 -5.331 1.443 -6.512 -1.851 -24.980 21 A_G14:A17_A A 14 ? A 17 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 48 1_555 A G 2 1_555 A C 47 1_555 0.588 -1.698 4.068 2.185 31.238 38.840 -4.568 -0.525 2.226 40.032 -2.801 49.509 1 AA_G1G2:C47C48_AA A 1 ? A 48 ? A 2 ? A 47 ? 1 A G 2 1_555 A C 47 1_555 A A 3 1_555 A U 46 1_555 -0.197 -2.220 3.306 -9.609 9.460 34.772 -4.655 -0.887 2.598 15.143 15.381 37.220 2 AA_G2A3:U46C47_AA A 2 ? A 47 ? A 3 ? A 46 ? 1 A A 3 1_555 A U 46 1_555 A C 4 1_555 A G 45 1_555 -0.447 -1.767 3.085 1.063 9.363 38.552 -3.568 0.768 2.590 13.929 -1.582 39.645 3 AA_A3C4:G45U46_AA A 3 ? A 46 ? A 4 ? A 45 ? 1 A C 4 1_555 A G 45 1_555 A G 5 1_555 A C 44 1_555 0.348 -1.423 2.872 11.650 18.618 24.601 -4.969 0.920 1.490 35.883 -22.453 32.865 4 AA_C4G5:C44G45_AA A 4 ? A 45 ? A 5 ? A 44 ? 1 A G 5 1_555 A C 44 1_555 A A 6 1_555 A U 42 1_555 2.708 -0.664 2.522 7.669 6.679 56.308 -0.992 -2.489 2.751 7.013 -8.054 57.145 5 AA_G5A6:U42C44_AA A 5 ? A 44 ? A 6 ? A 42 ? 1 A A 6 1_555 A U 42 1_555 A C 7 1_555 A G 41 1_555 1.951 -0.948 3.929 9.919 -2.399 24.088 -1.226 -0.715 4.442 -5.447 -22.519 26.131 6 AA_A6C7:G41U42_AA A 6 ? A 42 ? A 7 ? A 41 ? 1 A C 7 1_555 A G 41 1_555 A G 25 1_555 A G 40 1_555 1.992 -1.216 6.338 -4.218 9.828 -36.699 -0.649 1.970 6.617 -15.217 -6.531 -38.174 7 AA_C7G25:G40G41_AA A 7 ? A 41 ? A 25 ? A 40 ? 1 A G 25 1_555 A G 40 1_555 A G 26 1_555 A A 39 1_555 -0.892 -1.161 2.633 -3.843 -0.976 35.942 -1.757 0.992 2.740 -1.575 6.205 36.153 8 AA_G25G26:A39G40_AA A 25 ? A 40 ? A 26 ? A 39 ? 1 A G 26 1_555 A A 39 1_555 A C 27 1_555 A G 38 1_555 0.323 -1.918 3.597 -4.679 23.851 43.475 -3.994 -0.720 2.273 29.612 5.809 49.519 9 AA_G26C27:G38A39_AA A 26 ? A 39 ? A 27 ? A 38 ? 1 A C 27 1_555 A G 38 1_555 A U 28 1_555 A A 37 1_555 -0.258 -2.005 3.819 1.432 20.190 43.069 -4.207 0.443 2.668 25.867 -1.835 47.382 10 AA_C27U28:A37G38_AA A 27 ? A 38 ? A 28 ? A 37 ? 1 A U 28 1_555 A A 37 1_555 A G 29 1_555 A C 36 1_555 -0.344 -1.182 2.551 4.482 5.929 23.705 -4.051 1.784 2.098 13.999 -10.582 24.827 11 AA_U28G29:C36A37_AA A 28 ? A 37 ? A 29 ? A 36 ? 1 A G 29 1_555 A C 36 1_555 A C 30 1_555 A G 35 1_555 -0.480 -1.491 3.501 -2.138 20.724 34.730 -4.413 0.464 2.313 31.465 3.246 40.334 12 AA_G29C30:G35C36_AA A 29 ? A 36 ? A 30 ? A 35 ? 1 A C 30 1_555 A G 35 1_555 A U 31 1_555 A G 34 1_555 -0.635 -1.382 3.426 -3.676 3.667 110.632 -0.886 0.340 3.408 2.229 2.234 110.714 13 AA_C30U31:G34G35_AA A 30 ? A 35 ? A 31 ? A 34 ? 1 A U 8 1_555 A U 23 1_555 A G 9 1_555 A C 22 1_555 -0.928 -1.199 3.399 -4.971 9.220 37.066 -2.984 0.781 3.118 14.160 7.634 38.468 14 AA_U8G9:C22U23_AA A 8 ? A 23 ? A 9 ? A 22 ? 1 A G 9 1_555 A C 22 1_555 A A 10 1_555 A U 21 1_555 0.201 -1.982 2.574 0.370 -1.165 28.941 -3.758 -0.336 2.653 -2.329 -0.740 28.966 15 AA_G9A10:U21C22_AA A 9 ? A 22 ? A 10 ? A 21 ? 1 A A 10 1_555 A U 21 1_555 A A 11 1_555 A U 20 1_555 -0.408 -1.829 2.833 1.002 -1.819 31.836 -3.036 0.903 2.917 -3.312 -1.824 31.902 16 AA_A10A11:U20U21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A A 11 1_555 A U 20 1_555 A C 12 1_555 A G 19 1_555 -0.042 -1.763 3.091 -1.179 1.862 34.907 -3.194 -0.095 2.996 3.099 1.963 34.974 17 AA_A11C12:G19U20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A C 13 1_555 A G 18 1_555 0.237 -1.813 3.199 -0.811 7.888 34.184 -4.095 -0.505 2.720 13.199 1.357 35.065 18 AA_C12C13:G18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -3.332 -1.551 3.825 -2.495 10.685 65.525 -1.910 2.930 3.673 9.800 2.289 66.336 19 AA_C13G14:A17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'SFB 902' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 'Cryogenic H,C,N triple resonance probe' 2 AVANCE ? Bruker 900 'Cryogenic H,C,N triple resonance probe' 3 AVANCE ? Bruker 950 'Cryogenic H,C,N triple resonance probe' # _atom_sites.entry_id 6GZR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_