HEADER LIGASE 05-JUL-18 6GZY TITLE HOIP-FRAGMENT5 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF31; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HOIL-1-INTERACTING PROTEIN,HOIP,RING FINGER PROTEIN 31,RING- COMPND 5 TYPE E3 UBIQUITIN TRANSFERASE RNF31,ZINC IN-BETWEEN-RING-FINGER COMPND 6 UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF31, ZIBRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN LIGASE, E3, INHIBITOR COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.JOHANSSON,Y.C.I.TSAI,K.FANTOM,C.W.CHUNG,L.MARTINO,D.HOUSE, AUTHOR 2 K.RITTINGER REVDAT 3 17-JAN-24 6GZY 1 REMARK REVDAT 2 20-FEB-19 6GZY 1 JRNL REVDAT 1 30-JAN-19 6GZY 0 JRNL AUTH H.JOHANSSON,Y.C.ISABELLA TSAI,K.FANTOM,C.W.CHUNG,S.KUMPER, JRNL AUTH 2 L.MARTINO,D.A.THOMAS,H.C.EBERL,M.MUELBAIER,D.HOUSE, JRNL AUTH 3 K.RITTINGER JRNL TITL FRAGMENT-BASED COVALENT LIGAND SCREENING ENABLES RAPID JRNL TITL 2 DISCOVERY OF INHIBITORS FOR THE RBR E3 UBIQUITIN LIGASE JRNL TITL 3 HOIP. JRNL REF J. AM. CHEM. SOC. V. 141 2703 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30657686 JRNL DOI 10.1021/JACS.8B13193 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 3 NUMBER OF REFLECTIONS : 22017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 80.7416 - 4.2999 1.00 3487 204 0.2073 0.2519 REMARK 3 2 4.2999 - 3.4129 1.00 3348 171 0.1611 0.2112 REMARK 3 3 3.4129 - 2.9815 1.00 3315 179 0.1976 0.2418 REMARK 3 4 2.9815 - 2.7089 0.93 3026 179 0.2141 0.2579 REMARK 3 5 2.7089 - 2.5147 0.75 2464 116 0.2296 0.2819 REMARK 3 6 2.5147 - 2.3664 0.62 2035 91 0.2134 0.2977 REMARK 3 7 2.3664 - 2.2479 0.54 1742 99 0.2301 0.2406 REMARK 3 8 2.2479 - 2.1500 0.46 1491 70 0.2259 0.2715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3366 REMARK 3 ANGLE : 0.590 4538 REMARK 3 CHIRALITY : 0.041 456 REMARK 3 PLANARITY : 0.003 594 REMARK 3 DIHEDRAL : 15.446 2032 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 139.0814 114.3752 47.4549 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1827 REMARK 3 T33: 0.1079 T12: -0.0153 REMARK 3 T13: 0.0374 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.3705 L22: 2.8539 REMARK 3 L33: 1.4494 L12: -0.6812 REMARK 3 L13: 0.4782 L23: -1.3901 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: 0.0286 S13: -0.0203 REMARK 3 S21: -0.0491 S22: 0.0015 S23: 0.0633 REMARK 3 S31: 0.0523 S32: -0.0545 S33: -0.0513 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 117.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LJO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL PH 8.5, 28% W/V PEG REMARK 280 4000, 0.2 M LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.60100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.62450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.60100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.62450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 850 REMARK 465 PRO A 851 REMARK 465 GLY A 852 REMARK 465 PRO A 853 REMARK 465 GLU A 854 REMARK 465 TYR A 855 REMARK 465 GLN A 856 REMARK 465 ALA A 857 REMARK 465 ALA A 959 REMARK 465 GLY A 960 REMARK 465 ALA A 961 REMARK 465 ARG A 962 REMARK 465 ALA A 963 REMARK 465 VAL A 964 REMARK 465 PRO A 965 REMARK 465 GLY A 966 REMARK 465 GLY A 967 REMARK 465 LYS A 975 REMARK 465 GLU A 976 REMARK 465 VAL A 977 REMARK 465 PRO A 978 REMARK 465 ASN A 979 REMARK 465 GLY A 980 REMARK 465 LEU A 981 REMARK 465 GLY B 850 REMARK 465 PRO B 851 REMARK 465 GLY B 852 REMARK 465 PRO B 853 REMARK 465 GLU B 854 REMARK 465 TYR B 855 REMARK 465 GLN B 856 REMARK 465 ALA B 857 REMARK 465 GLN B 858 REMARK 465 ALA B 959 REMARK 465 GLY B 960 REMARK 465 ALA B 961 REMARK 465 ARG B 962 REMARK 465 ALA B 963 REMARK 465 VAL B 964 REMARK 465 PRO B 965 REMARK 465 GLY B 966 REMARK 465 GLY B 967 REMARK 465 LYS B 975 REMARK 465 GLU B 976 REMARK 465 VAL B 977 REMARK 465 PRO B 978 REMARK 465 ASN B 979 REMARK 465 GLY B 980 REMARK 465 LEU B 981 REMARK 465 ALA B 1042 REMARK 465 GLY B 1043 REMARK 465 GLU B 1044 REMARK 465 ASP B 1045 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 858 CG CD OE1 NE2 REMARK 480 GLU A 866 CG CD OE1 OE2 REMARK 480 ASN A 867 CG OD1 ND2 REMARK 480 LYS A 908 CG CD CE NZ REMARK 480 LYS A 910 CD CE NZ REMARK 480 ARG A 917 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 919 CG CD CE NZ REMARK 480 LYS A 920 CG CD CE NZ REMARK 480 ARG A 970 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 974 CD OE1 NE2 REMARK 480 ARG A 982 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 866 CG CD OE1 OE2 REMARK 480 ASN B 867 CG OD1 ND2 REMARK 480 LYS B 908 CG CD CE NZ REMARK 480 ASN B 909 CG OD1 ND2 REMARK 480 LYS B 910 CG CD CE NZ REMARK 480 ARG B 917 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 920 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 910 27.80 -147.83 REMARK 500 ASN B 867 98.10 -66.48 REMARK 500 ASN B 909 -0.66 81.36 REMARK 500 LYS B 920 59.87 -98.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 FHH A 4001 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 871 SG REMARK 620 2 CYS A 874 SG 115.4 REMARK 620 3 CYS A 890 SG 109.2 100.7 REMARK 620 4 CYS A 893 SG 100.0 120.6 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 898 SG REMARK 620 2 CYS A 901 SG 110.4 REMARK 620 3 HIS A 926 ND1 99.1 112.2 REMARK 620 4 CYS A 930 SG 105.1 110.5 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 911 SG REMARK 620 2 CYS A 916 SG 126.8 REMARK 620 3 HIS A 923 NE2 115.9 95.5 REMARK 620 4 HIS A 925 NE2 111.9 105.6 96.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 969 SG REMARK 620 2 CYS A 986 SG 115.7 REMARK 620 3 CYS A 998 SG 118.8 111.6 REMARK 620 4 HIS A1001 ND1 104.9 107.0 95.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 871 SG REMARK 620 2 CYS B 874 SG 115.9 REMARK 620 3 CYS B 890 SG 107.1 100.4 REMARK 620 4 CYS B 893 SG 104.3 119.3 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 898 SG REMARK 620 2 CYS B 901 SG 107.5 REMARK 620 3 HIS B 926 ND1 97.0 111.3 REMARK 620 4 CYS B 930 SG 105.8 113.8 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 911 SG REMARK 620 2 CYS B 916 SG 118.2 REMARK 620 3 HIS B 923 NE2 119.1 94.8 REMARK 620 4 HIS B 925 NE2 112.2 106.9 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 969 SG REMARK 620 2 CYS B 986 SG 123.8 REMARK 620 3 CYS B 998 SG 118.1 104.4 REMARK 620 4 HIS B1001 ND1 108.1 109.4 86.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FHH A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 4010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 4011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 4012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 4013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 4005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 4006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 4007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 4008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 4009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 4010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 4011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FHH B 4001 and CYS B REMARK 800 885 DBREF 6GZY A 853 1072 UNP Q96EP0 RNF31_HUMAN 853 1072 DBREF 6GZY B 853 1072 UNP Q96EP0 RNF31_HUMAN 853 1072 SEQADV 6GZY GLY A 850 UNP Q96EP0 EXPRESSION TAG SEQADV 6GZY PRO A 851 UNP Q96EP0 EXPRESSION TAG SEQADV 6GZY GLY A 852 UNP Q96EP0 EXPRESSION TAG SEQADV 6GZY GLY B 850 UNP Q96EP0 EXPRESSION TAG SEQADV 6GZY PRO B 851 UNP Q96EP0 EXPRESSION TAG SEQADV 6GZY GLY B 852 UNP Q96EP0 EXPRESSION TAG SEQRES 1 A 223 GLY PRO GLY PRO GLU TYR GLN ALA GLN GLY LEU ALA MET SEQRES 2 A 223 TYR LEU GLN GLU ASN GLY ILE ASP CYS PRO LYS CYS LYS SEQRES 3 A 223 PHE SER TYR ALA LEU ALA ARG GLY GLY CYS MET HIS PHE SEQRES 4 A 223 HIS CYS THR GLN CYS ARG HIS GLN PHE CYS SER GLY CYS SEQRES 5 A 223 TYR ASN ALA PHE TYR ALA LYS ASN LYS CYS PRO GLU PRO SEQRES 6 A 223 ASN CYS ARG VAL LYS LYS SER LEU HIS GLY HIS HIS PRO SEQRES 7 A 223 ARG ASP CYS LEU PHE TYR LEU ARG ASP TRP THR ALA LEU SEQRES 8 A 223 ARG LEU GLN LYS LEU LEU GLN ASP ASN ASN VAL MET PHE SEQRES 9 A 223 ASN THR GLU PRO PRO ALA GLY ALA ARG ALA VAL PRO GLY SEQRES 10 A 223 GLY GLY CYS ARG VAL ILE GLU GLN LYS GLU VAL PRO ASN SEQRES 11 A 223 GLY LEU ARG ASP GLU ALA CYS GLY LYS GLU THR PRO ALA SEQRES 12 A 223 GLY TYR ALA GLY LEU CYS GLN ALA HIS TYR LYS GLU TYR SEQRES 13 A 223 LEU VAL SER LEU ILE ASN ALA HIS SER LEU ASP PRO ALA SEQRES 14 A 223 THR LEU TYR GLU VAL GLU GLU LEU GLU THR ALA THR GLU SEQRES 15 A 223 ARG TYR LEU HIS VAL ARG PRO GLN PRO LEU ALA GLY GLU SEQRES 16 A 223 ASP PRO PRO ALA TYR GLN ALA ARG LEU LEU GLN LYS LEU SEQRES 17 A 223 THR GLU GLU VAL PRO LEU GLY GLN SER ILE PRO ARG ARG SEQRES 18 A 223 ARG LYS SEQRES 1 B 223 GLY PRO GLY PRO GLU TYR GLN ALA GLN GLY LEU ALA MET SEQRES 2 B 223 TYR LEU GLN GLU ASN GLY ILE ASP CYS PRO LYS CYS LYS SEQRES 3 B 223 PHE SER TYR ALA LEU ALA ARG GLY GLY CYS MET HIS PHE SEQRES 4 B 223 HIS CYS THR GLN CYS ARG HIS GLN PHE CYS SER GLY CYS SEQRES 5 B 223 TYR ASN ALA PHE TYR ALA LYS ASN LYS CYS PRO GLU PRO SEQRES 6 B 223 ASN CYS ARG VAL LYS LYS SER LEU HIS GLY HIS HIS PRO SEQRES 7 B 223 ARG ASP CYS LEU PHE TYR LEU ARG ASP TRP THR ALA LEU SEQRES 8 B 223 ARG LEU GLN LYS LEU LEU GLN ASP ASN ASN VAL MET PHE SEQRES 9 B 223 ASN THR GLU PRO PRO ALA GLY ALA ARG ALA VAL PRO GLY SEQRES 10 B 223 GLY GLY CYS ARG VAL ILE GLU GLN LYS GLU VAL PRO ASN SEQRES 11 B 223 GLY LEU ARG ASP GLU ALA CYS GLY LYS GLU THR PRO ALA SEQRES 12 B 223 GLY TYR ALA GLY LEU CYS GLN ALA HIS TYR LYS GLU TYR SEQRES 13 B 223 LEU VAL SER LEU ILE ASN ALA HIS SER LEU ASP PRO ALA SEQRES 14 B 223 THR LEU TYR GLU VAL GLU GLU LEU GLU THR ALA THR GLU SEQRES 15 B 223 ARG TYR LEU HIS VAL ARG PRO GLN PRO LEU ALA GLY GLU SEQRES 16 B 223 ASP PRO PRO ALA TYR GLN ALA ARG LEU LEU GLN LYS LEU SEQRES 17 B 223 THR GLU GLU VAL PRO LEU GLY GLN SER ILE PRO ARG ARG SEQRES 18 B 223 ARG LYS HET FHH A4001 20 HET ZN A4002 1 HET ZN A4003 1 HET ZN A4004 1 HET ZN A4005 1 HET SO4 A4006 5 HET SO4 A4007 5 HET SO4 A4008 5 HET SO4 A4009 5 HET EDO A4010 7 HET EDO A4011 10 HET PGE A4012 23 HET NA A4013 1 HET FHH B4001 20 HET ZN B4002 1 HET ZN B4003 1 HET ZN B4004 1 HET ZN B4005 1 HET SO4 B4006 5 HET SO4 B4007 5 HET SO4 B4008 5 HET EDO B4009 7 HET EDO B4010 10 HET NA B4011 1 HETNAM FHH METHYL 4-[(2-OXIDANYLIDENE-1,5,6,7- HETNAM 2 FHH TETRAHYDROCYCLOPENTA[B]PYRIDIN-3-YL) HETNAM 3 FHH CARBONYLAMINO]BUTANOATE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FHH 2(C14 H18 N2 O4) FORMUL 4 ZN 8(ZN 2+) FORMUL 8 SO4 7(O4 S 2-) FORMUL 12 EDO 4(C2 H6 O2) FORMUL 14 PGE C6 H14 O4 FORMUL 15 NA 2(NA 1+) FORMUL 27 HOH *207(H2 O) HELIX 1 AA1 GLY A 859 ASN A 867 1 9 HELIX 2 AA2 CYS A 930 ARG A 935 1 6 HELIX 3 AA3 THR A 938 ASN A 949 1 12 HELIX 4 AA4 CYS A 998 HIS A 1013 1 16 HELIX 5 AA5 ASP A 1016 TYR A 1021 5 6 HELIX 6 AA6 GLU A 1022 HIS A 1035 1 14 HELIX 7 AA7 ASP A 1045 VAL A 1061 1 17 HELIX 8 AA8 LEU B 860 GLU B 866 1 7 HELIX 9 AA9 CYS B 930 ARG B 935 1 6 HELIX 10 AB1 THR B 938 ASN B 949 1 12 HELIX 11 AB2 CYS B 998 HIS B 1013 1 16 HELIX 12 AB3 ASP B 1016 TYR B 1021 5 6 HELIX 13 AB4 GLU B 1022 HIS B 1035 1 14 HELIX 14 AB5 PRO B 1047 VAL B 1061 1 15 SHEET 1 AA1 2 ILE A 869 ASP A 870 0 SHEET 2 AA1 2 SER A 877 TYR A 878 -1 O TYR A 878 N ILE A 869 SHEET 1 AA2 2 HIS A 887 HIS A 889 0 SHEET 2 AA2 2 GLN A 896 CYS A 898 -1 O PHE A 897 N PHE A 888 SHEET 1 AA3 2 ILE A 972 GLU A 973 0 SHEET 2 AA3 2 GLU A 984 ALA A 985 -1 O GLU A 984 N GLU A 973 SHEET 1 AA4 2 GLY B 868 ASP B 870 0 SHEET 2 AA4 2 SER B 877 ALA B 879 -1 O TYR B 878 N ILE B 869 SHEET 1 AA5 2 HIS B 887 HIS B 889 0 SHEET 2 AA5 2 GLN B 896 CYS B 898 -1 O PHE B 897 N PHE B 888 SHEET 1 AA6 2 PHE B 905 TYR B 906 0 SHEET 2 AA6 2 HIS B 923 GLY B 924 -1 O HIS B 923 N TYR B 906 SHEET 1 AA7 2 ILE B 972 GLU B 973 0 SHEET 2 AA7 2 GLU B 984 ALA B 985 -1 O GLU B 984 N GLU B 973 LINK SG CYS A 885 C2 FHH A4001 1555 1555 1.62 LINK SG CYS B 885 C2 FHH B4001 1555 1555 1.62 LINK SG CYS A 871 ZN ZN A4002 1555 1555 2.37 LINK SG CYS A 874 ZN ZN A4002 1555 1555 2.34 LINK SG CYS A 890 ZN ZN A4002 1555 1555 2.28 LINK SG CYS A 893 ZN ZN A4002 1555 1555 2.24 LINK SG CYS A 898 ZN ZN A4003 1555 1555 2.25 LINK SG CYS A 901 ZN ZN A4003 1555 1555 2.28 LINK SG CYS A 911 ZN ZN A4004 1555 1555 2.20 LINK SG CYS A 916 ZN ZN A4004 1555 1555 2.25 LINK NE2 HIS A 923 ZN ZN A4004 1555 1555 2.02 LINK NE2 HIS A 925 ZN ZN A4004 1555 1555 2.17 LINK ND1 HIS A 926 ZN ZN A4003 1555 1555 2.00 LINK SG CYS A 930 ZN ZN A4003 1555 1555 2.33 LINK SG CYS A 969 ZN ZN A4005 1555 1555 2.43 LINK SG CYS A 986 ZN ZN A4005 1555 1555 2.42 LINK SG CYS A 998 ZN ZN A4005 1555 1555 2.21 LINK ND1 HIS A1001 ZN ZN A4005 1555 1555 2.03 LINK SG CYS B 871 ZN ZN B4002 1555 1555 2.27 LINK SG CYS B 874 ZN ZN B4002 1555 1555 2.32 LINK SG CYS B 890 ZN ZN B4002 1555 1555 2.31 LINK SG CYS B 893 ZN ZN B4002 1555 1555 2.21 LINK SG CYS B 898 ZN ZN B4003 1555 1555 2.30 LINK SG CYS B 901 ZN ZN B4003 1555 1555 2.23 LINK SG CYS B 911 ZN ZN B4004 1555 1555 2.19 LINK SG CYS B 916 ZN ZN B4004 1555 1555 2.31 LINK NE2 HIS B 923 ZN ZN B4004 1555 1555 2.03 LINK NE2 HIS B 925 ZN ZN B4004 1555 1555 2.16 LINK ND1 HIS B 926 ZN ZN B4003 1555 1555 2.07 LINK SG CYS B 930 ZN ZN B4003 1555 1555 2.25 LINK SG CYS B 969 ZN ZN B4005 1555 1555 2.22 LINK SG CYS B 986 ZN ZN B4005 1555 1555 2.58 LINK SG CYS B 998 ZN ZN B4005 1555 1555 2.24 LINK ND1 HIS B1001 ZN ZN B4005 1555 1555 1.90 SITE 1 AC1 12 ILE A 869 TYR A 878 LEU A 880 ALA A 881 SITE 2 AC1 12 CYS A 885 HIS A 887 PHE A 888 HIS A 889 SITE 3 AC1 12 THR A 891 SER A 899 HOH A4119 HOH A4143 SITE 1 AC2 4 CYS A 871 CYS A 874 CYS A 890 CYS A 893 SITE 1 AC3 4 CYS A 898 CYS A 901 HIS A 926 CYS A 930 SITE 1 AC4 4 CYS A 911 CYS A 916 HIS A 923 HIS A 925 SITE 1 AC5 4 CYS A 969 CYS A 986 CYS A 998 HIS A1001 SITE 1 AC6 7 ASN A 903 PRO A 927 GLY A1064 GLN A1065 SITE 2 AC6 7 SER A1066 HOH A4124 HOH A4138 SITE 1 AC7 6 THR A 938 ALA A 939 TYR A 994 GLN A 999 SITE 2 AC7 6 LYS A1003 HOH A4104 SITE 1 AC8 3 ASN A 867 ARG A1070 ARG A1071 SITE 1 AC9 3 LYS A 873 HOH A4103 LYS B 988 SITE 1 AD1 4 TYR A1021 GLU A1025 ARG A1032 TYR A1033 SITE 1 AD2 6 ASN A1011 PRO A1068 ARG A1070 HOH A4125 SITE 2 AD2 6 HOH A4140 HOH A4141 SITE 1 AD3 6 GLN A 947 ASN A 950 VAL A 951 MET A 952 SITE 2 AD3 6 PHE A 953 THR A 955 SITE 1 AD4 1 HIS A 926 SITE 1 AD5 4 CYS B 871 CYS B 874 CYS B 890 CYS B 893 SITE 1 AD6 4 CYS B 898 CYS B 901 HIS B 926 CYS B 930 SITE 1 AD7 4 CYS B 911 CYS B 916 HIS B 923 HIS B 925 SITE 1 AD8 4 CYS B 969 CYS B 986 CYS B 998 HIS B1001 SITE 1 AD9 8 ASN B 903 PRO B 927 GLY B1064 GLN B1065 SITE 2 AD9 8 SER B1066 NA B4011 HOH B4120 HOH B4127 SITE 1 AE1 7 THR B 938 ALA B 939 TYR B 994 GLN B 999 SITE 2 AE1 7 LYS B1003 HOH B4105 HOH B4159 SITE 1 AE2 3 ARG B1070 ARG B1071 HOH B4133 SITE 1 AE3 5 TYR B 933 TYR B1021 GLU B1025 ARG B1032 SITE 2 AE3 5 TYR B1033 SITE 1 AE4 6 SER B1008 ASN B1011 PRO B1068 ARG B1070 SITE 2 AE4 6 HOH B4103 HOH B4126 SITE 1 AE5 1 SO4 B4006 SITE 1 AE6 18 CYS A 874 CYS A 893 TYR B 878 LEU B 880 SITE 2 AE6 18 ALA B 881 ARG B 882 GLY B 883 GLY B 884 SITE 3 AE6 18 MET B 886 HIS B 887 PHE B 888 HIS B 889 SITE 4 AE6 18 THR B 891 SER B 899 GLN B 974 HOH B4122 SITE 5 AE6 18 HOH B4123 HOH B4145 CRYST1 111.202 117.249 37.940 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026357 0.00000