data_6H05 # _entry.id 6H05 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6H05 WWPDB D_1200010791 EMDB EMD-0108 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details ;Cryo-electron microscopic structure of the dihydrolipoamide succinyltransferase (E2) component of the human alpha-ketoglutarate (2-oxoglutarate) dehydrogenase complex [residues 218-453] ; _pdbx_database_related.db_id EMD-0108 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6H05 _pdbx_database_status.recvd_initial_deposition_date 2018-07-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nagy, B.' 1 ? 'Zambo, Z.' 2 ? 'Hubert, A.' 3 ? 'Polak, M.' 4 ? 'Nemeria, N.S.' 5 ? 'Novacek, J.' 6 ? 'Jordan, F.' 7 ? 'Adam-Vizi, V.' 8 0000-0002-8350-8701 'Ambrus, A.' 9 0000-0001-6014-3175 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Biochim Biophys Acta Gen Subj' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1872-8006 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 1865 _citation.language ? _citation.page_first 129889 _citation.page_last 129889 _citation.title ;Structure of the dihydrolipoamide succinyltransferase (E2) component of the human alpha-ketoglutarate dehydrogenase complex (hKGDHc) revealed by cryo-EM and cross-linking mass spectrometry: Implications for the overall hKGDHc structure. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbagen.2021.129889 _citation.pdbx_database_id_PubMed 33684457 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagy, B.' 1 ? primary 'Polak, M.' 2 ? primary 'Ozohanics, O.' 3 ? primary 'Zambo, Z.' 4 ? primary 'Szabo, E.' 5 ? primary 'Hubert, A.' 6 ? primary 'Jordan, F.' 7 ? primary 'Novacek, J.' 8 ? primary 'Adam-Vizi, V.' 9 ? primary 'Ambrus, A.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6H05 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial' _entity.formula_weight 45543.004 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.3.1.61 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;N-terminal Twin-Strep (affinity) tag with proteolytic cleavage site and linkers: MASWSHPQFEKGGGSGGGSGGSAWSHPQFEKLEVLFQGPG Density was found for 236 residues [218-453] ; # _entity_name_com.entity_id 1 _entity_name_com.name ;2-oxoglutarate dehydrogenase complex component E2,OGDC-E2,Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex,E2K ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASWSHPQFEKGGGSGGGSGGSAWSHPQFEKLEVLFQGPGDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIE TDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPV PSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHK EAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTI TELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLI DGREAVTFLRKIKAAVEDPRVLLLDL ; _entity_poly.pdbx_seq_one_letter_code_can ;MASWSHPQFEKGGGSGGGSGGSAWSHPQFEKLEVLFQGPGDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIE TDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPV PSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHK EAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTI TELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLI DGREAVTFLRKIKAAVEDPRVLLLDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 TRP n 1 5 SER n 1 6 HIS n 1 7 PRO n 1 8 GLN n 1 9 PHE n 1 10 GLU n 1 11 LYS n 1 12 GLY n 1 13 GLY n 1 14 GLY n 1 15 SER n 1 16 GLY n 1 17 GLY n 1 18 GLY n 1 19 SER n 1 20 GLY n 1 21 GLY n 1 22 SER n 1 23 ALA n 1 24 TRP n 1 25 SER n 1 26 HIS n 1 27 PRO n 1 28 GLN n 1 29 PHE n 1 30 GLU n 1 31 LYS n 1 32 LEU n 1 33 GLU n 1 34 VAL n 1 35 LEU n 1 36 PHE n 1 37 GLN n 1 38 GLY n 1 39 PRO n 1 40 GLY n 1 41 ASP n 1 42 ASP n 1 43 LEU n 1 44 VAL n 1 45 THR n 1 46 VAL n 1 47 LYS n 1 48 THR n 1 49 PRO n 1 50 ALA n 1 51 PHE n 1 52 ALA n 1 53 GLU n 1 54 SER n 1 55 VAL n 1 56 THR n 1 57 GLU n 1 58 GLY n 1 59 ASP n 1 60 VAL n 1 61 ARG n 1 62 TRP n 1 63 GLU n 1 64 LYS n 1 65 ALA n 1 66 VAL n 1 67 GLY n 1 68 ASP n 1 69 THR n 1 70 VAL n 1 71 ALA n 1 72 GLU n 1 73 ASP n 1 74 GLU n 1 75 VAL n 1 76 VAL n 1 77 CYS n 1 78 GLU n 1 79 ILE n 1 80 GLU n 1 81 THR n 1 82 ASP n 1 83 LYS n 1 84 THR n 1 85 SER n 1 86 VAL n 1 87 GLN n 1 88 VAL n 1 89 PRO n 1 90 SER n 1 91 PRO n 1 92 ALA n 1 93 ASN n 1 94 GLY n 1 95 VAL n 1 96 ILE n 1 97 GLU n 1 98 ALA n 1 99 LEU n 1 100 LEU n 1 101 VAL n 1 102 PRO n 1 103 ASP n 1 104 GLY n 1 105 GLY n 1 106 LYS n 1 107 VAL n 1 108 GLU n 1 109 GLY n 1 110 GLY n 1 111 THR n 1 112 PRO n 1 113 LEU n 1 114 PHE n 1 115 THR n 1 116 LEU n 1 117 ARG n 1 118 LYS n 1 119 THR n 1 120 GLY n 1 121 ALA n 1 122 ALA n 1 123 PRO n 1 124 ALA n 1 125 LYS n 1 126 ALA n 1 127 LYS n 1 128 PRO n 1 129 ALA n 1 130 GLU n 1 131 ALA n 1 132 PRO n 1 133 ALA n 1 134 ALA n 1 135 ALA n 1 136 ALA n 1 137 PRO n 1 138 LYS n 1 139 ALA n 1 140 GLU n 1 141 PRO n 1 142 THR n 1 143 ALA n 1 144 ALA n 1 145 ALA n 1 146 VAL n 1 147 PRO n 1 148 PRO n 1 149 PRO n 1 150 ALA n 1 151 ALA n 1 152 PRO n 1 153 ILE n 1 154 PRO n 1 155 THR n 1 156 GLN n 1 157 MET n 1 158 PRO n 1 159 PRO n 1 160 VAL n 1 161 PRO n 1 162 SER n 1 163 PRO n 1 164 SER n 1 165 GLN n 1 166 PRO n 1 167 PRO n 1 168 SER n 1 169 GLY n 1 170 LYS n 1 171 PRO n 1 172 VAL n 1 173 SER n 1 174 ALA n 1 175 VAL n 1 176 LYS n 1 177 PRO n 1 178 THR n 1 179 VAL n 1 180 ALA n 1 181 PRO n 1 182 PRO n 1 183 LEU n 1 184 ALA n 1 185 GLU n 1 186 PRO n 1 187 GLY n 1 188 ALA n 1 189 GLY n 1 190 LYS n 1 191 GLY n 1 192 LEU n 1 193 ARG n 1 194 SER n 1 195 GLU n 1 196 HIS n 1 197 ARG n 1 198 GLU n 1 199 LYS n 1 200 MET n 1 201 ASN n 1 202 ARG n 1 203 MET n 1 204 ARG n 1 205 GLN n 1 206 ARG n 1 207 ILE n 1 208 ALA n 1 209 GLN n 1 210 ARG n 1 211 LEU n 1 212 LYS n 1 213 GLU n 1 214 ALA n 1 215 GLN n 1 216 ASN n 1 217 THR n 1 218 CYS n 1 219 ALA n 1 220 MET n 1 221 LEU n 1 222 THR n 1 223 THR n 1 224 PHE n 1 225 ASN n 1 226 GLU n 1 227 ILE n 1 228 ASP n 1 229 MET n 1 230 SER n 1 231 ASN n 1 232 ILE n 1 233 GLN n 1 234 GLU n 1 235 MET n 1 236 ARG n 1 237 ALA n 1 238 ARG n 1 239 HIS n 1 240 LYS n 1 241 GLU n 1 242 ALA n 1 243 PHE n 1 244 LEU n 1 245 LYS n 1 246 LYS n 1 247 HIS n 1 248 ASN n 1 249 LEU n 1 250 LYS n 1 251 LEU n 1 252 GLY n 1 253 PHE n 1 254 MET n 1 255 SER n 1 256 ALA n 1 257 PHE n 1 258 VAL n 1 259 LYS n 1 260 ALA n 1 261 SER n 1 262 ALA n 1 263 PHE n 1 264 ALA n 1 265 LEU n 1 266 GLN n 1 267 GLU n 1 268 GLN n 1 269 PRO n 1 270 VAL n 1 271 VAL n 1 272 ASN n 1 273 ALA n 1 274 VAL n 1 275 ILE n 1 276 ASP n 1 277 ASP n 1 278 THR n 1 279 THR n 1 280 LYS n 1 281 GLU n 1 282 VAL n 1 283 VAL n 1 284 TYR n 1 285 ARG n 1 286 ASP n 1 287 TYR n 1 288 ILE n 1 289 ASP n 1 290 ILE n 1 291 SER n 1 292 VAL n 1 293 ALA n 1 294 VAL n 1 295 ALA n 1 296 THR n 1 297 PRO n 1 298 ARG n 1 299 GLY n 1 300 LEU n 1 301 VAL n 1 302 VAL n 1 303 PRO n 1 304 VAL n 1 305 ILE n 1 306 ARG n 1 307 ASN n 1 308 VAL n 1 309 GLU n 1 310 ALA n 1 311 MET n 1 312 ASN n 1 313 PHE n 1 314 ALA n 1 315 ASP n 1 316 ILE n 1 317 GLU n 1 318 ARG n 1 319 THR n 1 320 ILE n 1 321 THR n 1 322 GLU n 1 323 LEU n 1 324 GLY n 1 325 GLU n 1 326 LYS n 1 327 ALA n 1 328 ARG n 1 329 LYS n 1 330 ASN n 1 331 GLU n 1 332 LEU n 1 333 ALA n 1 334 ILE n 1 335 GLU n 1 336 ASP n 1 337 MET n 1 338 ASP n 1 339 GLY n 1 340 GLY n 1 341 THR n 1 342 PHE n 1 343 THR n 1 344 ILE n 1 345 SER n 1 346 ASN n 1 347 GLY n 1 348 GLY n 1 349 VAL n 1 350 PHE n 1 351 GLY n 1 352 SER n 1 353 LEU n 1 354 PHE n 1 355 GLY n 1 356 THR n 1 357 PRO n 1 358 ILE n 1 359 ILE n 1 360 ASN n 1 361 PRO n 1 362 PRO n 1 363 GLN n 1 364 SER n 1 365 ALA n 1 366 ILE n 1 367 LEU n 1 368 GLY n 1 369 MET n 1 370 HIS n 1 371 GLY n 1 372 ILE n 1 373 PHE n 1 374 ASP n 1 375 ARG n 1 376 PRO n 1 377 VAL n 1 378 ALA n 1 379 ILE n 1 380 GLY n 1 381 GLY n 1 382 LYS n 1 383 VAL n 1 384 GLU n 1 385 VAL n 1 386 ARG n 1 387 PRO n 1 388 MET n 1 389 MET n 1 390 TYR n 1 391 VAL n 1 392 ALA n 1 393 LEU n 1 394 THR n 1 395 TYR n 1 396 ASP n 1 397 HIS n 1 398 ARG n 1 399 LEU n 1 400 ILE n 1 401 ASP n 1 402 GLY n 1 403 ARG n 1 404 GLU n 1 405 ALA n 1 406 VAL n 1 407 THR n 1 408 PHE n 1 409 LEU n 1 410 ARG n 1 411 LYS n 1 412 ILE n 1 413 LYS n 1 414 ALA n 1 415 ALA n 1 416 VAL n 1 417 GLU n 1 418 ASP n 1 419 PRO n 1 420 ARG n 1 421 VAL n 1 422 LEU n 1 423 LEU n 1 424 LEU n 1 425 ASP n 1 426 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 426 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DLST, DLTS' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET52b+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ODO2_HUMAN _struct_ref.pdbx_db_accession P36957 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTG AAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKM NRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTK EVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIIN PPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL ; _struct_ref.pdbx_align_begin 68 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6H05 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 41 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 426 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36957 _struct_ref_seq.db_align_beg 68 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 453 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 386 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6H05 MET A 1 ? UNP P36957 ? ? 'initiating methionine' -39 1 1 6H05 ALA A 2 ? UNP P36957 ? ? 'expression tag' -38 2 1 6H05 SER A 3 ? UNP P36957 ? ? 'expression tag' -37 3 1 6H05 TRP A 4 ? UNP P36957 ? ? 'expression tag' -36 4 1 6H05 SER A 5 ? UNP P36957 ? ? 'expression tag' -35 5 1 6H05 HIS A 6 ? UNP P36957 ? ? 'expression tag' -34 6 1 6H05 PRO A 7 ? UNP P36957 ? ? 'expression tag' -33 7 1 6H05 GLN A 8 ? UNP P36957 ? ? 'expression tag' -32 8 1 6H05 PHE A 9 ? UNP P36957 ? ? 'expression tag' -31 9 1 6H05 GLU A 10 ? UNP P36957 ? ? 'expression tag' -30 10 1 6H05 LYS A 11 ? UNP P36957 ? ? 'expression tag' -29 11 1 6H05 GLY A 12 ? UNP P36957 ? ? 'expression tag' -28 12 1 6H05 GLY A 13 ? UNP P36957 ? ? 'expression tag' -27 13 1 6H05 GLY A 14 ? UNP P36957 ? ? 'expression tag' -26 14 1 6H05 SER A 15 ? UNP P36957 ? ? 'expression tag' -25 15 1 6H05 GLY A 16 ? UNP P36957 ? ? 'expression tag' -24 16 1 6H05 GLY A 17 ? UNP P36957 ? ? 'expression tag' -23 17 1 6H05 GLY A 18 ? UNP P36957 ? ? 'expression tag' -22 18 1 6H05 SER A 19 ? UNP P36957 ? ? 'expression tag' -21 19 1 6H05 GLY A 20 ? UNP P36957 ? ? 'expression tag' -20 20 1 6H05 GLY A 21 ? UNP P36957 ? ? 'expression tag' -19 21 1 6H05 SER A 22 ? UNP P36957 ? ? 'expression tag' -18 22 1 6H05 ALA A 23 ? UNP P36957 ? ? 'expression tag' -17 23 1 6H05 TRP A 24 ? UNP P36957 ? ? 'expression tag' -16 24 1 6H05 SER A 25 ? UNP P36957 ? ? 'expression tag' -15 25 1 6H05 HIS A 26 ? UNP P36957 ? ? 'expression tag' -14 26 1 6H05 PRO A 27 ? UNP P36957 ? ? 'expression tag' -13 27 1 6H05 GLN A 28 ? UNP P36957 ? ? 'expression tag' -12 28 1 6H05 PHE A 29 ? UNP P36957 ? ? 'expression tag' -11 29 1 6H05 GLU A 30 ? UNP P36957 ? ? 'expression tag' -10 30 1 6H05 LYS A 31 ? UNP P36957 ? ? 'expression tag' -9 31 1 6H05 LEU A 32 ? UNP P36957 ? ? 'expression tag' -8 32 1 6H05 GLU A 33 ? UNP P36957 ? ? 'expression tag' -7 33 1 6H05 VAL A 34 ? UNP P36957 ? ? 'expression tag' -6 34 1 6H05 LEU A 35 ? UNP P36957 ? ? 'expression tag' -5 35 1 6H05 PHE A 36 ? UNP P36957 ? ? 'expression tag' -4 36 1 6H05 GLN A 37 ? UNP P36957 ? ? 'expression tag' -3 37 1 6H05 GLY A 38 ? UNP P36957 ? ? 'expression tag' -2 38 1 6H05 PRO A 39 ? UNP P36957 ? ? 'expression tag' -1 39 1 6H05 GLY A 40 ? UNP P36957 ? ? 'expression tag' 0 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6H05 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6H05 _struct.title ;Cryo-electron microscopic structure of the dihydrolipoamide succinyltransferase (E2) component of the human alpha-ketoglutarate (2-oxoglutarate) dehydrogenase complex [residues 218-453] ; _struct.pdbx_descriptor 'Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (E.C.2.3.1.61)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6H05 _struct_keywords.text ;alpha-ketoglutarate dehydrogenase complex; 2-oxoglutarate dehydrogenase complex; dihydrolipoamide succinyltransferase; E2 component, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 201 ? LYS A 212 ? ASN A 161 LYS A 172 1 ? 12 HELX_P HELX_P2 AA2 MET A 229 ? GLU A 234 ? MET A 189 GLU A 194 1 ? 6 HELX_P HELX_P3 AA3 GLU A 234 ? HIS A 239 ? GLU A 194 HIS A 199 1 ? 6 HELX_P HELX_P4 AA4 HIS A 239 ? ASN A 248 ? HIS A 199 ASN A 208 1 ? 10 HELX_P HELX_P5 AA5 MET A 254 ? GLN A 268 ? MET A 214 GLN A 228 1 ? 15 HELX_P HELX_P6 AA6 GLN A 268 ? ALA A 273 ? GLN A 228 ALA A 233 1 ? 6 HELX_P HELX_P7 AA7 VAL A 308 ? MET A 311 ? VAL A 268 MET A 271 5 ? 4 HELX_P HELX_P8 AA8 ALA A 314 ? LYS A 329 ? ALA A 274 LYS A 289 1 ? 16 HELX_P HELX_P9 AA9 ALA A 333 ? ASP A 338 ? ALA A 293 ASP A 298 1 ? 6 HELX_P HELX_P10 AB1 GLY A 402 ? ASP A 418 ? GLY A 362 ASP A 378 1 ? 17 HELX_P HELX_P11 AB2 ARG A 420 ? ASP A 425 ? ARG A 380 ASP A 385 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 361 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 321 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 362 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 322 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 220 ? ASP A 228 ? MET A 180 ASP A 188 AA1 2 VAL A 383 ? ASP A 396 ? VAL A 343 ASP A 356 AA1 3 ALA A 365 ? ALA A 378 ? ALA A 325 ALA A 338 AA1 4 THR A 343 ? ASN A 346 ? THR A 303 ASN A 306 AA1 5 ASP A 289 ? VAL A 292 ? ASP A 249 VAL A 252 AA1 6 VAL A 304 ? ARG A 306 ? VAL A 264 ARG A 266 AA2 1 VAL A 274 ? ASP A 276 ? VAL A 234 ASP A 236 AA2 2 GLU A 281 ? VAL A 283 ? GLU A 241 VAL A 243 AA3 1 VAL A 294 ? THR A 296 ? VAL A 254 THR A 256 AA3 2 GLY A 299 ? VAL A 301 ? GLY A 259 VAL A 261 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 227 ? N ILE A 187 O MET A 389 ? O MET A 349 AA1 2 3 O GLU A 384 ? O GLU A 344 N VAL A 377 ? N VAL A 337 AA1 3 4 O LEU A 367 ? O LEU A 327 N THR A 343 ? N THR A 303 AA1 4 5 O ILE A 344 ? O ILE A 304 N SER A 291 ? N SER A 251 AA1 5 6 N ILE A 290 ? N ILE A 250 O ILE A 305 ? O ILE A 265 AA2 1 2 N ASP A 276 ? N ASP A 236 O GLU A 281 ? O GLU A 241 AA3 1 2 N THR A 296 ? N THR A 256 O GLY A 299 ? O GLY A 259 # _atom_sites.entry_id 6H05 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -39 ? ? ? A . n A 1 2 ALA 2 -38 ? ? ? A . n A 1 3 SER 3 -37 ? ? ? A . n A 1 4 TRP 4 -36 ? ? ? A . n A 1 5 SER 5 -35 ? ? ? A . n A 1 6 HIS 6 -34 ? ? ? A . n A 1 7 PRO 7 -33 ? ? ? A . n A 1 8 GLN 8 -32 ? ? ? A . n A 1 9 PHE 9 -31 ? ? ? A . n A 1 10 GLU 10 -30 ? ? ? A . n A 1 11 LYS 11 -29 ? ? ? A . n A 1 12 GLY 12 -28 ? ? ? A . n A 1 13 GLY 13 -27 ? ? ? A . n A 1 14 GLY 14 -26 ? ? ? A . n A 1 15 SER 15 -25 ? ? ? A . n A 1 16 GLY 16 -24 ? ? ? A . n A 1 17 GLY 17 -23 ? ? ? A . n A 1 18 GLY 18 -22 ? ? ? A . n A 1 19 SER 19 -21 ? ? ? A . n A 1 20 GLY 20 -20 ? ? ? A . n A 1 21 GLY 21 -19 ? ? ? A . n A 1 22 SER 22 -18 ? ? ? A . n A 1 23 ALA 23 -17 ? ? ? A . n A 1 24 TRP 24 -16 ? ? ? A . n A 1 25 SER 25 -15 ? ? ? A . n A 1 26 HIS 26 -14 ? ? ? A . n A 1 27 PRO 27 -13 ? ? ? A . n A 1 28 GLN 28 -12 ? ? ? A . n A 1 29 PHE 29 -11 ? ? ? A . n A 1 30 GLU 30 -10 ? ? ? A . n A 1 31 LYS 31 -9 ? ? ? A . n A 1 32 LEU 32 -8 ? ? ? A . n A 1 33 GLU 33 -7 ? ? ? A . n A 1 34 VAL 34 -6 ? ? ? A . n A 1 35 LEU 35 -5 ? ? ? A . n A 1 36 PHE 36 -4 ? ? ? A . n A 1 37 GLN 37 -3 ? ? ? A . n A 1 38 GLY 38 -2 ? ? ? A . n A 1 39 PRO 39 -1 ? ? ? A . n A 1 40 GLY 40 0 ? ? ? A . n A 1 41 ASP 41 1 ? ? ? A . n A 1 42 ASP 42 2 ? ? ? A . n A 1 43 LEU 43 3 ? ? ? A . n A 1 44 VAL 44 4 ? ? ? A . n A 1 45 THR 45 5 ? ? ? A . n A 1 46 VAL 46 6 ? ? ? A . n A 1 47 LYS 47 7 ? ? ? A . n A 1 48 THR 48 8 ? ? ? A . n A 1 49 PRO 49 9 ? ? ? A . n A 1 50 ALA 50 10 ? ? ? A . n A 1 51 PHE 51 11 ? ? ? A . n A 1 52 ALA 52 12 ? ? ? A . n A 1 53 GLU 53 13 ? ? ? A . n A 1 54 SER 54 14 ? ? ? A . n A 1 55 VAL 55 15 ? ? ? A . n A 1 56 THR 56 16 ? ? ? A . n A 1 57 GLU 57 17 ? ? ? A . n A 1 58 GLY 58 18 ? ? ? A . n A 1 59 ASP 59 19 ? ? ? A . n A 1 60 VAL 60 20 ? ? ? A . n A 1 61 ARG 61 21 ? ? ? A . n A 1 62 TRP 62 22 ? ? ? A . n A 1 63 GLU 63 23 ? ? ? A . n A 1 64 LYS 64 24 ? ? ? A . n A 1 65 ALA 65 25 ? ? ? A . n A 1 66 VAL 66 26 ? ? ? A . n A 1 67 GLY 67 27 ? ? ? A . n A 1 68 ASP 68 28 ? ? ? A . n A 1 69 THR 69 29 ? ? ? A . n A 1 70 VAL 70 30 ? ? ? A . n A 1 71 ALA 71 31 ? ? ? A . n A 1 72 GLU 72 32 ? ? ? A . n A 1 73 ASP 73 33 ? ? ? A . n A 1 74 GLU 74 34 ? ? ? A . n A 1 75 VAL 75 35 ? ? ? A . n A 1 76 VAL 76 36 ? ? ? A . n A 1 77 CYS 77 37 ? ? ? A . n A 1 78 GLU 78 38 ? ? ? A . n A 1 79 ILE 79 39 ? ? ? A . n A 1 80 GLU 80 40 ? ? ? A . n A 1 81 THR 81 41 ? ? ? A . n A 1 82 ASP 82 42 ? ? ? A . n A 1 83 LYS 83 43 ? ? ? A . n A 1 84 THR 84 44 ? ? ? A . n A 1 85 SER 85 45 ? ? ? A . n A 1 86 VAL 86 46 ? ? ? A . n A 1 87 GLN 87 47 ? ? ? A . n A 1 88 VAL 88 48 ? ? ? A . n A 1 89 PRO 89 49 ? ? ? A . n A 1 90 SER 90 50 ? ? ? A . n A 1 91 PRO 91 51 ? ? ? A . n A 1 92 ALA 92 52 ? ? ? A . n A 1 93 ASN 93 53 ? ? ? A . n A 1 94 GLY 94 54 ? ? ? A . n A 1 95 VAL 95 55 ? ? ? A . n A 1 96 ILE 96 56 ? ? ? A . n A 1 97 GLU 97 57 ? ? ? A . n A 1 98 ALA 98 58 ? ? ? A . n A 1 99 LEU 99 59 ? ? ? A . n A 1 100 LEU 100 60 ? ? ? A . n A 1 101 VAL 101 61 ? ? ? A . n A 1 102 PRO 102 62 ? ? ? A . n A 1 103 ASP 103 63 ? ? ? A . n A 1 104 GLY 104 64 ? ? ? A . n A 1 105 GLY 105 65 ? ? ? A . n A 1 106 LYS 106 66 ? ? ? A . n A 1 107 VAL 107 67 ? ? ? A . n A 1 108 GLU 108 68 ? ? ? A . n A 1 109 GLY 109 69 ? ? ? A . n A 1 110 GLY 110 70 ? ? ? A . n A 1 111 THR 111 71 ? ? ? A . n A 1 112 PRO 112 72 ? ? ? A . n A 1 113 LEU 113 73 ? ? ? A . n A 1 114 PHE 114 74 ? ? ? A . n A 1 115 THR 115 75 ? ? ? A . n A 1 116 LEU 116 76 ? ? ? A . n A 1 117 ARG 117 77 ? ? ? A . n A 1 118 LYS 118 78 ? ? ? A . n A 1 119 THR 119 79 ? ? ? A . n A 1 120 GLY 120 80 ? ? ? A . n A 1 121 ALA 121 81 ? ? ? A . n A 1 122 ALA 122 82 ? ? ? A . n A 1 123 PRO 123 83 ? ? ? A . n A 1 124 ALA 124 84 ? ? ? A . n A 1 125 LYS 125 85 ? ? ? A . n A 1 126 ALA 126 86 ? ? ? A . n A 1 127 LYS 127 87 ? ? ? A . n A 1 128 PRO 128 88 ? ? ? A . n A 1 129 ALA 129 89 ? ? ? A . n A 1 130 GLU 130 90 ? ? ? A . n A 1 131 ALA 131 91 ? ? ? A . n A 1 132 PRO 132 92 ? ? ? A . n A 1 133 ALA 133 93 ? ? ? A . n A 1 134 ALA 134 94 ? ? ? A . n A 1 135 ALA 135 95 ? ? ? A . n A 1 136 ALA 136 96 ? ? ? A . n A 1 137 PRO 137 97 ? ? ? A . n A 1 138 LYS 138 98 ? ? ? A . n A 1 139 ALA 139 99 ? ? ? A . n A 1 140 GLU 140 100 ? ? ? A . n A 1 141 PRO 141 101 ? ? ? A . n A 1 142 THR 142 102 ? ? ? A . n A 1 143 ALA 143 103 ? ? ? A . n A 1 144 ALA 144 104 ? ? ? A . n A 1 145 ALA 145 105 ? ? ? A . n A 1 146 VAL 146 106 ? ? ? A . n A 1 147 PRO 147 107 ? ? ? A . n A 1 148 PRO 148 108 ? ? ? A . n A 1 149 PRO 149 109 ? ? ? A . n A 1 150 ALA 150 110 ? ? ? A . n A 1 151 ALA 151 111 ? ? ? A . n A 1 152 PRO 152 112 ? ? ? A . n A 1 153 ILE 153 113 ? ? ? A . n A 1 154 PRO 154 114 ? ? ? A . n A 1 155 THR 155 115 ? ? ? A . n A 1 156 GLN 156 116 ? ? ? A . n A 1 157 MET 157 117 ? ? ? A . n A 1 158 PRO 158 118 ? ? ? A . n A 1 159 PRO 159 119 ? ? ? A . n A 1 160 VAL 160 120 ? ? ? A . n A 1 161 PRO 161 121 ? ? ? A . n A 1 162 SER 162 122 ? ? ? A . n A 1 163 PRO 163 123 ? ? ? A . n A 1 164 SER 164 124 ? ? ? A . n A 1 165 GLN 165 125 ? ? ? A . n A 1 166 PRO 166 126 ? ? ? A . n A 1 167 PRO 167 127 ? ? ? A . n A 1 168 SER 168 128 ? ? ? A . n A 1 169 GLY 169 129 ? ? ? A . n A 1 170 LYS 170 130 ? ? ? A . n A 1 171 PRO 171 131 ? ? ? A . n A 1 172 VAL 172 132 ? ? ? A . n A 1 173 SER 173 133 ? ? ? A . n A 1 174 ALA 174 134 ? ? ? A . n A 1 175 VAL 175 135 ? ? ? A . n A 1 176 LYS 176 136 ? ? ? A . n A 1 177 PRO 177 137 ? ? ? A . n A 1 178 THR 178 138 ? ? ? A . n A 1 179 VAL 179 139 ? ? ? A . n A 1 180 ALA 180 140 ? ? ? A . n A 1 181 PRO 181 141 ? ? ? A . n A 1 182 PRO 182 142 ? ? ? A . n A 1 183 LEU 183 143 ? ? ? A . n A 1 184 ALA 184 144 ? ? ? A . n A 1 185 GLU 185 145 ? ? ? A . n A 1 186 PRO 186 146 ? ? ? A . n A 1 187 GLY 187 147 ? ? ? A . n A 1 188 ALA 188 148 ? ? ? A . n A 1 189 GLY 189 149 ? ? ? A . n A 1 190 LYS 190 150 ? ? ? A . n A 1 191 GLY 191 151 151 GLY GLY A . n A 1 192 LEU 192 152 152 LEU LEU A . n A 1 193 ARG 193 153 153 ARG ARG A . n A 1 194 SER 194 154 154 SER SER A . n A 1 195 GLU 195 155 155 GLU GLU A . n A 1 196 HIS 196 156 156 HIS HIS A . n A 1 197 ARG 197 157 157 ARG ARG A . n A 1 198 GLU 198 158 158 GLU GLU A . n A 1 199 LYS 199 159 159 LYS LYS A . n A 1 200 MET 200 160 160 MET MET A . n A 1 201 ASN 201 161 161 ASN ASN A . n A 1 202 ARG 202 162 162 ARG ARG A . n A 1 203 MET 203 163 163 MET MET A . n A 1 204 ARG 204 164 164 ARG ARG A . n A 1 205 GLN 205 165 165 GLN GLN A . n A 1 206 ARG 206 166 166 ARG ARG A . n A 1 207 ILE 207 167 167 ILE ILE A . n A 1 208 ALA 208 168 168 ALA ALA A . n A 1 209 GLN 209 169 169 GLN GLN A . n A 1 210 ARG 210 170 170 ARG ARG A . n A 1 211 LEU 211 171 171 LEU LEU A . n A 1 212 LYS 212 172 172 LYS LYS A . n A 1 213 GLU 213 173 173 GLU GLU A . n A 1 214 ALA 214 174 174 ALA ALA A . n A 1 215 GLN 215 175 175 GLN GLN A . n A 1 216 ASN 216 176 176 ASN ASN A . n A 1 217 THR 217 177 177 THR THR A . n A 1 218 CYS 218 178 178 CYS CYS A . n A 1 219 ALA 219 179 179 ALA ALA A . n A 1 220 MET 220 180 180 MET MET A . n A 1 221 LEU 221 181 181 LEU LEU A . n A 1 222 THR 222 182 182 THR THR A . n A 1 223 THR 223 183 183 THR THR A . n A 1 224 PHE 224 184 184 PHE PHE A . n A 1 225 ASN 225 185 185 ASN ASN A . n A 1 226 GLU 226 186 186 GLU GLU A . n A 1 227 ILE 227 187 187 ILE ILE A . n A 1 228 ASP 228 188 188 ASP ASP A . n A 1 229 MET 229 189 189 MET MET A . n A 1 230 SER 230 190 190 SER SER A . n A 1 231 ASN 231 191 191 ASN ASN A . n A 1 232 ILE 232 192 192 ILE ILE A . n A 1 233 GLN 233 193 193 GLN GLN A . n A 1 234 GLU 234 194 194 GLU GLU A . n A 1 235 MET 235 195 195 MET MET A . n A 1 236 ARG 236 196 196 ARG ARG A . n A 1 237 ALA 237 197 197 ALA ALA A . n A 1 238 ARG 238 198 198 ARG ARG A . n A 1 239 HIS 239 199 199 HIS HIS A . n A 1 240 LYS 240 200 200 LYS LYS A . n A 1 241 GLU 241 201 201 GLU GLU A . n A 1 242 ALA 242 202 202 ALA ALA A . n A 1 243 PHE 243 203 203 PHE PHE A . n A 1 244 LEU 244 204 204 LEU LEU A . n A 1 245 LYS 245 205 205 LYS LYS A . n A 1 246 LYS 246 206 206 LYS LYS A . n A 1 247 HIS 247 207 207 HIS HIS A . n A 1 248 ASN 248 208 208 ASN ASN A . n A 1 249 LEU 249 209 209 LEU LEU A . n A 1 250 LYS 250 210 210 LYS LYS A . n A 1 251 LEU 251 211 211 LEU LEU A . n A 1 252 GLY 252 212 212 GLY GLY A . n A 1 253 PHE 253 213 213 PHE PHE A . n A 1 254 MET 254 214 214 MET MET A . n A 1 255 SER 255 215 215 SER SER A . n A 1 256 ALA 256 216 216 ALA ALA A . n A 1 257 PHE 257 217 217 PHE PHE A . n A 1 258 VAL 258 218 218 VAL VAL A . n A 1 259 LYS 259 219 219 LYS LYS A . n A 1 260 ALA 260 220 220 ALA ALA A . n A 1 261 SER 261 221 221 SER SER A . n A 1 262 ALA 262 222 222 ALA ALA A . n A 1 263 PHE 263 223 223 PHE PHE A . n A 1 264 ALA 264 224 224 ALA ALA A . n A 1 265 LEU 265 225 225 LEU LEU A . n A 1 266 GLN 266 226 226 GLN GLN A . n A 1 267 GLU 267 227 227 GLU GLU A . n A 1 268 GLN 268 228 228 GLN GLN A . n A 1 269 PRO 269 229 229 PRO PRO A . n A 1 270 VAL 270 230 230 VAL VAL A . n A 1 271 VAL 271 231 231 VAL VAL A . n A 1 272 ASN 272 232 232 ASN ASN A . n A 1 273 ALA 273 233 233 ALA ALA A . n A 1 274 VAL 274 234 234 VAL VAL A . n A 1 275 ILE 275 235 235 ILE ILE A . n A 1 276 ASP 276 236 236 ASP ASP A . n A 1 277 ASP 277 237 237 ASP ASP A . n A 1 278 THR 278 238 238 THR THR A . n A 1 279 THR 279 239 239 THR THR A . n A 1 280 LYS 280 240 240 LYS LYS A . n A 1 281 GLU 281 241 241 GLU GLU A . n A 1 282 VAL 282 242 242 VAL VAL A . n A 1 283 VAL 283 243 243 VAL VAL A . n A 1 284 TYR 284 244 244 TYR TYR A . n A 1 285 ARG 285 245 245 ARG ARG A . n A 1 286 ASP 286 246 246 ASP ASP A . n A 1 287 TYR 287 247 247 TYR TYR A . n A 1 288 ILE 288 248 248 ILE ILE A . n A 1 289 ASP 289 249 249 ASP ASP A . n A 1 290 ILE 290 250 250 ILE ILE A . n A 1 291 SER 291 251 251 SER SER A . n A 1 292 VAL 292 252 252 VAL VAL A . n A 1 293 ALA 293 253 253 ALA ALA A . n A 1 294 VAL 294 254 254 VAL VAL A . n A 1 295 ALA 295 255 255 ALA ALA A . n A 1 296 THR 296 256 256 THR THR A . n A 1 297 PRO 297 257 257 PRO PRO A . n A 1 298 ARG 298 258 258 ARG ARG A . n A 1 299 GLY 299 259 259 GLY GLY A . n A 1 300 LEU 300 260 260 LEU LEU A . n A 1 301 VAL 301 261 261 VAL VAL A . n A 1 302 VAL 302 262 262 VAL VAL A . n A 1 303 PRO 303 263 263 PRO PRO A . n A 1 304 VAL 304 264 264 VAL VAL A . n A 1 305 ILE 305 265 265 ILE ILE A . n A 1 306 ARG 306 266 266 ARG ARG A . n A 1 307 ASN 307 267 267 ASN ASN A . n A 1 308 VAL 308 268 268 VAL VAL A . n A 1 309 GLU 309 269 269 GLU GLU A . n A 1 310 ALA 310 270 270 ALA ALA A . n A 1 311 MET 311 271 271 MET MET A . n A 1 312 ASN 312 272 272 ASN ASN A . n A 1 313 PHE 313 273 273 PHE PHE A . n A 1 314 ALA 314 274 274 ALA ALA A . n A 1 315 ASP 315 275 275 ASP ASP A . n A 1 316 ILE 316 276 276 ILE ILE A . n A 1 317 GLU 317 277 277 GLU GLU A . n A 1 318 ARG 318 278 278 ARG ARG A . n A 1 319 THR 319 279 279 THR THR A . n A 1 320 ILE 320 280 280 ILE ILE A . n A 1 321 THR 321 281 281 THR THR A . n A 1 322 GLU 322 282 282 GLU GLU A . n A 1 323 LEU 323 283 283 LEU LEU A . n A 1 324 GLY 324 284 284 GLY GLY A . n A 1 325 GLU 325 285 285 GLU GLU A . n A 1 326 LYS 326 286 286 LYS LYS A . n A 1 327 ALA 327 287 287 ALA ALA A . n A 1 328 ARG 328 288 288 ARG ARG A . n A 1 329 LYS 329 289 289 LYS LYS A . n A 1 330 ASN 330 290 290 ASN ASN A . n A 1 331 GLU 331 291 291 GLU GLU A . n A 1 332 LEU 332 292 292 LEU LEU A . n A 1 333 ALA 333 293 293 ALA ALA A . n A 1 334 ILE 334 294 294 ILE ILE A . n A 1 335 GLU 335 295 295 GLU GLU A . n A 1 336 ASP 336 296 296 ASP ASP A . n A 1 337 MET 337 297 297 MET MET A . n A 1 338 ASP 338 298 298 ASP ASP A . n A 1 339 GLY 339 299 299 GLY GLY A . n A 1 340 GLY 340 300 300 GLY GLY A . n A 1 341 THR 341 301 301 THR THR A . n A 1 342 PHE 342 302 302 PHE PHE A . n A 1 343 THR 343 303 303 THR THR A . n A 1 344 ILE 344 304 304 ILE ILE A . n A 1 345 SER 345 305 305 SER SER A . n A 1 346 ASN 346 306 306 ASN ASN A . n A 1 347 GLY 347 307 307 GLY GLY A . n A 1 348 GLY 348 308 308 GLY GLY A . n A 1 349 VAL 349 309 309 VAL VAL A . n A 1 350 PHE 350 310 310 PHE PHE A . n A 1 351 GLY 351 311 311 GLY GLY A . n A 1 352 SER 352 312 312 SER SER A . n A 1 353 LEU 353 313 313 LEU LEU A . n A 1 354 PHE 354 314 314 PHE PHE A . n A 1 355 GLY 355 315 315 GLY GLY A . n A 1 356 THR 356 316 316 THR THR A . n A 1 357 PRO 357 317 317 PRO PRO A . n A 1 358 ILE 358 318 318 ILE ILE A . n A 1 359 ILE 359 319 319 ILE ILE A . n A 1 360 ASN 360 320 320 ASN ASN A . n A 1 361 PRO 361 321 321 PRO PRO A . n A 1 362 PRO 362 322 322 PRO PRO A . n A 1 363 GLN 363 323 323 GLN GLN A . n A 1 364 SER 364 324 324 SER SER A . n A 1 365 ALA 365 325 325 ALA ALA A . n A 1 366 ILE 366 326 326 ILE ILE A . n A 1 367 LEU 367 327 327 LEU LEU A . n A 1 368 GLY 368 328 328 GLY GLY A . n A 1 369 MET 369 329 329 MET MET A . n A 1 370 HIS 370 330 330 HIS HIS A . n A 1 371 GLY 371 331 331 GLY GLY A . n A 1 372 ILE 372 332 332 ILE ILE A . n A 1 373 PHE 373 333 333 PHE PHE A . n A 1 374 ASP 374 334 334 ASP ASP A . n A 1 375 ARG 375 335 335 ARG ARG A . n A 1 376 PRO 376 336 336 PRO PRO A . n A 1 377 VAL 377 337 337 VAL VAL A . n A 1 378 ALA 378 338 338 ALA ALA A . n A 1 379 ILE 379 339 339 ILE ILE A . n A 1 380 GLY 380 340 340 GLY GLY A . n A 1 381 GLY 381 341 341 GLY GLY A . n A 1 382 LYS 382 342 342 LYS LYS A . n A 1 383 VAL 383 343 343 VAL VAL A . n A 1 384 GLU 384 344 344 GLU GLU A . n A 1 385 VAL 385 345 345 VAL VAL A . n A 1 386 ARG 386 346 346 ARG ARG A . n A 1 387 PRO 387 347 347 PRO PRO A . n A 1 388 MET 388 348 348 MET MET A . n A 1 389 MET 389 349 349 MET MET A . n A 1 390 TYR 390 350 350 TYR TYR A . n A 1 391 VAL 391 351 351 VAL VAL A . n A 1 392 ALA 392 352 352 ALA ALA A . n A 1 393 LEU 393 353 353 LEU LEU A . n A 1 394 THR 394 354 354 THR THR A . n A 1 395 TYR 395 355 355 TYR TYR A . n A 1 396 ASP 396 356 356 ASP ASP A . n A 1 397 HIS 397 357 357 HIS HIS A . n A 1 398 ARG 398 358 358 ARG ARG A . n A 1 399 LEU 399 359 359 LEU LEU A . n A 1 400 ILE 400 360 360 ILE ILE A . n A 1 401 ASP 401 361 361 ASP ASP A . n A 1 402 GLY 402 362 362 GLY GLY A . n A 1 403 ARG 403 363 363 ARG ARG A . n A 1 404 GLU 404 364 364 GLU GLU A . n A 1 405 ALA 405 365 365 ALA ALA A . n A 1 406 VAL 406 366 366 VAL VAL A . n A 1 407 THR 407 367 367 THR THR A . n A 1 408 PHE 408 368 368 PHE PHE A . n A 1 409 LEU 409 369 369 LEU LEU A . n A 1 410 ARG 410 370 370 ARG ARG A . n A 1 411 LYS 411 371 371 LYS LYS A . n A 1 412 ILE 412 372 372 ILE ILE A . n A 1 413 LYS 413 373 373 LYS LYS A . n A 1 414 ALA 414 374 374 ALA ALA A . n A 1 415 ALA 415 375 375 ALA ALA A . n A 1 416 VAL 416 376 376 VAL VAL A . n A 1 417 GLU 417 377 377 GLU GLU A . n A 1 418 ASP 418 378 378 ASP ASP A . n A 1 419 PRO 419 379 379 PRO PRO A . n A 1 420 ARG 420 380 380 ARG ARG A . n A 1 421 VAL 421 381 381 VAL VAL A . n A 1 422 LEU 422 382 382 LEU LEU A . n A 1 423 LEU 423 383 383 LEU LEU A . n A 1 424 LEU 424 384 384 LEU LEU A . n A 1 425 ASP 425 385 385 ASP ASP A . n A 1 426 LEU 426 386 386 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 13670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 2 'point symmetry operation' ? ? 0.000335 -0.999657 -0.026184 -0.00000 0.998030 0.001977 -0.062703 0.00000 0.062733 -0.026112 0.997689 0.00000 3 'point symmetry operation' ? ? -0.999331 -0.001627 0.036549 -0.00000 -0.001627 -0.996047 -0.088815 -0.00000 0.036549 -0.088815 0.995377 0.00000 4 'point symmetry operation' ? ? 0.000335 0.998030 0.062733 -0.00000 -0.999657 0.001977 -0.026112 -0.00000 -0.026184 -0.062703 0.997689 -0.00000 5 'point symmetry operation' ? ? 0.998820 -0.008649 -0.047779 -0.00000 -0.047774 0.000797 -0.998858 -0.00000 0.008677 0.999962 0.000383 -0.00000 6 'point symmetry operation' ? ? -0.011295 -0.997247 -0.073279 -0.00000 -0.061882 0.073841 -0.995348 -0.00000 0.998020 -0.006707 -0.062546 -0.00000 7 'point symmetry operation' ? ? -0.999884 0.011233 -0.010284 -0.00000 0.011233 0.087997 -0.996057 -0.00000 -0.010284 -0.996057 -0.088113 -0.00000 8 'point symmetry operation' ? ? 0.010231 0.999832 0.015217 -0.00000 0.025342 0.014953 -0.999567 -0.00000 -0.999626 0.010612 -0.025185 -0.00000 9 'point symmetry operation' ? ? 0.997641 -0.056422 -0.039102 -0.00000 -0.056422 -0.998406 0.001104 -0.00000 -0.039102 0.001104 -0.999235 -0.00001 10 'point symmetry operation' ? ? -0.058430 -0.996389 -0.061596 -0.00000 -0.996389 0.054401 0.065182 -0.00000 -0.061596 0.065182 -0.995970 -0.00001 11 'point symmetry operation' ? ? -0.998310 0.058049 0.002553 -0.00000 0.058049 0.994453 0.087710 0.00000 0.002553 0.087710 -0.996143 -0.00001 12 'point symmetry operation' ? ? 0.057761 0.998016 0.025047 -0.00000 0.998016 -0.058354 0.023632 0.00000 0.025047 0.023632 -0.999407 -0.00001 13 'point symmetry operation' ? ? 0.998820 -0.047774 0.008677 0.00000 -0.008649 0.000797 0.999962 0.00000 -0.047779 -0.998858 0.000383 -0.00000 14 'point symmetry operation' ? ? -0.046801 -0.998799 -0.014501 -0.00000 0.063523 -0.017463 0.997828 0.00000 -0.996882 0.045778 0.064264 -0.00000 15 'point symmetry operation' ? ? -0.997757 0.045189 0.049386 -0.00000 0.045189 -0.089591 0.994953 0.00000 0.049386 0.994953 0.087348 -0.00000 16 'point symmetry operation' ? ? 0.047864 0.996215 0.072564 -0.00000 -0.026983 -0.071331 0.997088 0.00000 0.998489 -0.049683 0.023466 -0.00000 17 'point symmetry operation' ? ? 0.000845 -0.014891 0.999889 0.00000 0.072941 0.997227 0.014790 0.00000 -0.997336 0.072920 0.001929 -0.00000 18 'point symmetry operation' ? ? 0.047864 -0.026983 0.998489 0.00000 0.996215 -0.071331 -0.049683 0.00000 0.072564 0.997088 0.023466 -0.00000 19 'point symmetry operation' ? ? 0.035725 -0.073974 0.996620 0.00000 -0.073974 -0.994717 -0.071181 -0.00000 0.996620 -0.071181 -0.041008 -0.00000 20 'point symmetry operation' ? ? -0.011295 -0.061882 0.998020 0.00000 -0.997247 0.073841 -0.006707 -0.00000 -0.073279 -0.995348 -0.062546 -0.00000 21 'point symmetry operation' ? ? 0.000845 0.072941 -0.997336 -0.00000 -0.014891 0.997227 0.072920 0.00000 0.999889 0.014790 0.001929 -0.00000 22 'point symmetry operation' ? ? 0.010231 0.025342 -0.999626 -0.00000 0.999832 0.014953 0.010612 0.00000 0.015217 -0.999567 -0.025185 -0.00000 23 'point symmetry operation' ? ? -0.037414 0.015924 -0.999173 -0.00000 0.015924 -0.999737 -0.016530 -0.00000 -0.999173 -0.016530 0.037151 -0.00000 24 'point symmetry operation' ? ? -0.046801 0.063523 -0.996882 -0.00000 -0.998799 -0.017463 0.045778 -0.00000 -0.014501 0.997828 0.064264 -0.00000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-22 2 'Structure model' 1 1 2021-04-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _em_3d_fitting.entry_id 6H05 _em_3d_fitting.id 1 _em_3d_fitting.details 'COOT was used for structure manipulations, while MOLPROBITY was applied for validation.' _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6H05 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 740101 _em_3d_reconstruction.resolution 2.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Protein in 100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH 8.0.' _em_entity_assembly.name 'Affinity purified human dihydrolipoamide succinyltransferase' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6H05 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 298 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6H05 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6H05 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6H05 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry O # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 251 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 303 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 176 ? ? 72.69 -5.53 2 1 LEU A 181 ? ? -126.93 -167.80 3 1 ASN A 208 ? ? 35.07 55.26 4 1 ASN A 320 ? ? -116.79 66.11 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -39 ? A MET 1 2 1 Y 1 A ALA -38 ? A ALA 2 3 1 Y 1 A SER -37 ? A SER 3 4 1 Y 1 A TRP -36 ? A TRP 4 5 1 Y 1 A SER -35 ? A SER 5 6 1 Y 1 A HIS -34 ? A HIS 6 7 1 Y 1 A PRO -33 ? A PRO 7 8 1 Y 1 A GLN -32 ? A GLN 8 9 1 Y 1 A PHE -31 ? A PHE 9 10 1 Y 1 A GLU -30 ? A GLU 10 11 1 Y 1 A LYS -29 ? A LYS 11 12 1 Y 1 A GLY -28 ? A GLY 12 13 1 Y 1 A GLY -27 ? A GLY 13 14 1 Y 1 A GLY -26 ? A GLY 14 15 1 Y 1 A SER -25 ? A SER 15 16 1 Y 1 A GLY -24 ? A GLY 16 17 1 Y 1 A GLY -23 ? A GLY 17 18 1 Y 1 A GLY -22 ? A GLY 18 19 1 Y 1 A SER -21 ? A SER 19 20 1 Y 1 A GLY -20 ? A GLY 20 21 1 Y 1 A GLY -19 ? A GLY 21 22 1 Y 1 A SER -18 ? A SER 22 23 1 Y 1 A ALA -17 ? A ALA 23 24 1 Y 1 A TRP -16 ? A TRP 24 25 1 Y 1 A SER -15 ? A SER 25 26 1 Y 1 A HIS -14 ? A HIS 26 27 1 Y 1 A PRO -13 ? A PRO 27 28 1 Y 1 A GLN -12 ? A GLN 28 29 1 Y 1 A PHE -11 ? A PHE 29 30 1 Y 1 A GLU -10 ? A GLU 30 31 1 Y 1 A LYS -9 ? A LYS 31 32 1 Y 1 A LEU -8 ? A LEU 32 33 1 Y 1 A GLU -7 ? A GLU 33 34 1 Y 1 A VAL -6 ? A VAL 34 35 1 Y 1 A LEU -5 ? A LEU 35 36 1 Y 1 A PHE -4 ? A PHE 36 37 1 Y 1 A GLN -3 ? A GLN 37 38 1 Y 1 A GLY -2 ? A GLY 38 39 1 Y 1 A PRO -1 ? A PRO 39 40 1 Y 1 A GLY 0 ? A GLY 40 41 1 Y 1 A ASP 1 ? A ASP 41 42 1 Y 1 A ASP 2 ? A ASP 42 43 1 Y 1 A LEU 3 ? A LEU 43 44 1 Y 1 A VAL 4 ? A VAL 44 45 1 Y 1 A THR 5 ? A THR 45 46 1 Y 1 A VAL 6 ? A VAL 46 47 1 Y 1 A LYS 7 ? A LYS 47 48 1 Y 1 A THR 8 ? A THR 48 49 1 Y 1 A PRO 9 ? A PRO 49 50 1 Y 1 A ALA 10 ? A ALA 50 51 1 Y 1 A PHE 11 ? A PHE 51 52 1 Y 1 A ALA 12 ? A ALA 52 53 1 Y 1 A GLU 13 ? A GLU 53 54 1 Y 1 A SER 14 ? A SER 54 55 1 Y 1 A VAL 15 ? A VAL 55 56 1 Y 1 A THR 16 ? A THR 56 57 1 Y 1 A GLU 17 ? A GLU 57 58 1 Y 1 A GLY 18 ? A GLY 58 59 1 Y 1 A ASP 19 ? A ASP 59 60 1 Y 1 A VAL 20 ? A VAL 60 61 1 Y 1 A ARG 21 ? A ARG 61 62 1 Y 1 A TRP 22 ? A TRP 62 63 1 Y 1 A GLU 23 ? A GLU 63 64 1 Y 1 A LYS 24 ? A LYS 64 65 1 Y 1 A ALA 25 ? A ALA 65 66 1 Y 1 A VAL 26 ? A VAL 66 67 1 Y 1 A GLY 27 ? A GLY 67 68 1 Y 1 A ASP 28 ? A ASP 68 69 1 Y 1 A THR 29 ? A THR 69 70 1 Y 1 A VAL 30 ? A VAL 70 71 1 Y 1 A ALA 31 ? A ALA 71 72 1 Y 1 A GLU 32 ? A GLU 72 73 1 Y 1 A ASP 33 ? A ASP 73 74 1 Y 1 A GLU 34 ? A GLU 74 75 1 Y 1 A VAL 35 ? A VAL 75 76 1 Y 1 A VAL 36 ? A VAL 76 77 1 Y 1 A CYS 37 ? A CYS 77 78 1 Y 1 A GLU 38 ? A GLU 78 79 1 Y 1 A ILE 39 ? A ILE 79 80 1 Y 1 A GLU 40 ? A GLU 80 81 1 Y 1 A THR 41 ? A THR 81 82 1 Y 1 A ASP 42 ? A ASP 82 83 1 Y 1 A LYS 43 ? A LYS 83 84 1 Y 1 A THR 44 ? A THR 84 85 1 Y 1 A SER 45 ? A SER 85 86 1 Y 1 A VAL 46 ? A VAL 86 87 1 Y 1 A GLN 47 ? A GLN 87 88 1 Y 1 A VAL 48 ? A VAL 88 89 1 Y 1 A PRO 49 ? A PRO 89 90 1 Y 1 A SER 50 ? A SER 90 91 1 Y 1 A PRO 51 ? A PRO 91 92 1 Y 1 A ALA 52 ? A ALA 92 93 1 Y 1 A ASN 53 ? A ASN 93 94 1 Y 1 A GLY 54 ? A GLY 94 95 1 Y 1 A VAL 55 ? A VAL 95 96 1 Y 1 A ILE 56 ? A ILE 96 97 1 Y 1 A GLU 57 ? A GLU 97 98 1 Y 1 A ALA 58 ? A ALA 98 99 1 Y 1 A LEU 59 ? A LEU 99 100 1 Y 1 A LEU 60 ? A LEU 100 101 1 Y 1 A VAL 61 ? A VAL 101 102 1 Y 1 A PRO 62 ? A PRO 102 103 1 Y 1 A ASP 63 ? A ASP 103 104 1 Y 1 A GLY 64 ? A GLY 104 105 1 Y 1 A GLY 65 ? A GLY 105 106 1 Y 1 A LYS 66 ? A LYS 106 107 1 Y 1 A VAL 67 ? A VAL 107 108 1 Y 1 A GLU 68 ? A GLU 108 109 1 Y 1 A GLY 69 ? A GLY 109 110 1 Y 1 A GLY 70 ? A GLY 110 111 1 Y 1 A THR 71 ? A THR 111 112 1 Y 1 A PRO 72 ? A PRO 112 113 1 Y 1 A LEU 73 ? A LEU 113 114 1 Y 1 A PHE 74 ? A PHE 114 115 1 Y 1 A THR 75 ? A THR 115 116 1 Y 1 A LEU 76 ? A LEU 116 117 1 Y 1 A ARG 77 ? A ARG 117 118 1 Y 1 A LYS 78 ? A LYS 118 119 1 Y 1 A THR 79 ? A THR 119 120 1 Y 1 A GLY 80 ? A GLY 120 121 1 Y 1 A ALA 81 ? A ALA 121 122 1 Y 1 A ALA 82 ? A ALA 122 123 1 Y 1 A PRO 83 ? A PRO 123 124 1 Y 1 A ALA 84 ? A ALA 124 125 1 Y 1 A LYS 85 ? A LYS 125 126 1 Y 1 A ALA 86 ? A ALA 126 127 1 Y 1 A LYS 87 ? A LYS 127 128 1 Y 1 A PRO 88 ? A PRO 128 129 1 Y 1 A ALA 89 ? A ALA 129 130 1 Y 1 A GLU 90 ? A GLU 130 131 1 Y 1 A ALA 91 ? A ALA 131 132 1 Y 1 A PRO 92 ? A PRO 132 133 1 Y 1 A ALA 93 ? A ALA 133 134 1 Y 1 A ALA 94 ? A ALA 134 135 1 Y 1 A ALA 95 ? A ALA 135 136 1 Y 1 A ALA 96 ? A ALA 136 137 1 Y 1 A PRO 97 ? A PRO 137 138 1 Y 1 A LYS 98 ? A LYS 138 139 1 Y 1 A ALA 99 ? A ALA 139 140 1 Y 1 A GLU 100 ? A GLU 140 141 1 Y 1 A PRO 101 ? A PRO 141 142 1 Y 1 A THR 102 ? A THR 142 143 1 Y 1 A ALA 103 ? A ALA 143 144 1 Y 1 A ALA 104 ? A ALA 144 145 1 Y 1 A ALA 105 ? A ALA 145 146 1 Y 1 A VAL 106 ? A VAL 146 147 1 Y 1 A PRO 107 ? A PRO 147 148 1 Y 1 A PRO 108 ? A PRO 148 149 1 Y 1 A PRO 109 ? A PRO 149 150 1 Y 1 A ALA 110 ? A ALA 150 151 1 Y 1 A ALA 111 ? A ALA 151 152 1 Y 1 A PRO 112 ? A PRO 152 153 1 Y 1 A ILE 113 ? A ILE 153 154 1 Y 1 A PRO 114 ? A PRO 154 155 1 Y 1 A THR 115 ? A THR 155 156 1 Y 1 A GLN 116 ? A GLN 156 157 1 Y 1 A MET 117 ? A MET 157 158 1 Y 1 A PRO 118 ? A PRO 158 159 1 Y 1 A PRO 119 ? A PRO 159 160 1 Y 1 A VAL 120 ? A VAL 160 161 1 Y 1 A PRO 121 ? A PRO 161 162 1 Y 1 A SER 122 ? A SER 162 163 1 Y 1 A PRO 123 ? A PRO 163 164 1 Y 1 A SER 124 ? A SER 164 165 1 Y 1 A GLN 125 ? A GLN 165 166 1 Y 1 A PRO 126 ? A PRO 166 167 1 Y 1 A PRO 127 ? A PRO 167 168 1 Y 1 A SER 128 ? A SER 168 169 1 Y 1 A GLY 129 ? A GLY 169 170 1 Y 1 A LYS 130 ? A LYS 170 171 1 Y 1 A PRO 131 ? A PRO 171 172 1 Y 1 A VAL 132 ? A VAL 172 173 1 Y 1 A SER 133 ? A SER 173 174 1 Y 1 A ALA 134 ? A ALA 174 175 1 Y 1 A VAL 135 ? A VAL 175 176 1 Y 1 A LYS 136 ? A LYS 176 177 1 Y 1 A PRO 137 ? A PRO 177 178 1 Y 1 A THR 138 ? A THR 178 179 1 Y 1 A VAL 139 ? A VAL 179 180 1 Y 1 A ALA 140 ? A ALA 180 181 1 Y 1 A PRO 141 ? A PRO 181 182 1 Y 1 A PRO 142 ? A PRO 182 183 1 Y 1 A LEU 143 ? A LEU 183 184 1 Y 1 A ALA 144 ? A ALA 184 185 1 Y 1 A GLU 145 ? A GLU 185 186 1 Y 1 A PRO 146 ? A PRO 186 187 1 Y 1 A GLY 147 ? A GLY 187 188 1 Y 1 A ALA 148 ? A ALA 188 189 1 Y 1 A GLY 149 ? A GLY 189 190 1 Y 1 A LYS 150 ? A LYS 190 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 100 mM 'NH2C(CH2OH)3HCl' Tris-HCl 1 2 150 mM NaCl 'Sodium cloride' 1 3 1 mM C10H16N2O8 'Ethylenediaminetetraacetic acid' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid pET52b+ _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 48.8 _em_image_recording.average_exposure_time 1 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Manual picking for the templates was performed by the EMAN2 E2boxer program. Automated selection was then applied by CryoSPARC.' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1533026 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'PARTICLE SELECTION' ? cryoSPARC ? 1 ? ? 3 'IMAGE ACQUISITION' ? ? ? ? ? 1 4 MASKING ? ? ? ? ? ? 5 'CTF CORRECTION' ? ? ? 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? 11 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 13 CLASSIFICATION ? cryoSPARC ? 1 ? ? 14 RECONSTRUCTION ? cryoSPARC ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1.0 _em_specimen.details 'This sample was highly purified and monodisperse.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Hungarian Academy of Sciences' Hungary 'MTA grant 02001 (to Vera Adam-Vizi)' 1 'Hungarian Academy of Sciences' Hungary 'OTKA grant 112230 (to Vera Adam-Vizi)' 2 'Hungarian Academy of Sciences' Hungary 'NAP grant KTIA_13_NAP-A-III/6 (to Vera Adam-Vizi)' 3 'Hungarian Academy of Sciences' Hungary 'NAP 2 grant 2017-1.2.1-NKP- 2017-00002 (to Vera Adam-Vizi)' 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'NIH-GM-050380 (to Frank Jordan)' 5 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'NIH R15-GM116077 (to Frank Jordan)' 6 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #