HEADER OXIDOREDUCTASE 10-JUL-18 6H0X TITLE CRYSTAL STRUCTURE OF KDM4D WITH TETRAZOLYLHYDRAZIDE LIGAND AA040 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: JMJD2D; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3D, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2D; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM4D, JHDM3D, JMJD2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KDM4D, LIGAND BINDING, TETRAZOLYLHYDRAZIDE, TETRAZOLE, INHIBITOR KEYWDS 2 DESIGN, CANCER, EPIGENETICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.H.MALECKI,M.S.WEISS,U.HEINEMANN,A.LINK REVDAT 2 17-JAN-24 6H0X 1 LINK REVDAT 1 29-JAN-20 6H0X 0 JRNL AUTH P.H.MALECKI,M.S.WEISS,U.HEINEMANN,A.LINK JRNL TITL CRYSTAL STRUCTURE OF KDM4D WITH TETRAZOLYLHYDRAZIDE LIGAND JRNL TITL 2 AA040 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 48590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.320 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1913 - 4.0443 0.99 3405 154 0.1653 0.2095 REMARK 3 2 4.0443 - 3.2103 0.99 3209 145 0.1539 0.1875 REMARK 3 3 3.2103 - 2.8045 1.00 3186 144 0.1485 0.1754 REMARK 3 4 2.8045 - 2.5481 1.00 3151 142 0.1572 0.1945 REMARK 3 5 2.5481 - 2.3655 1.00 3148 142 0.1526 0.1814 REMARK 3 6 2.3655 - 2.2260 0.96 3000 136 0.2290 0.2837 REMARK 3 7 2.2260 - 2.1145 0.99 3059 138 0.1772 0.2149 REMARK 3 8 2.1145 - 2.0225 1.00 3133 141 0.1898 0.2308 REMARK 3 9 2.0225 - 1.9446 1.00 3084 140 0.1954 0.2195 REMARK 3 10 1.9446 - 1.8775 0.90 2794 126 0.3406 0.4139 REMARK 3 11 1.8775 - 1.8188 1.00 3095 139 0.2193 0.2152 REMARK 3 12 1.8188 - 1.7668 1.00 3100 140 0.2044 0.2261 REMARK 3 13 1.7668 - 1.7203 1.00 3094 140 0.2184 0.2328 REMARK 3 14 1.7203 - 1.6783 1.00 3093 140 0.2139 0.2114 REMARK 3 15 1.6783 - 1.6402 0.96 2940 132 0.2206 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 48.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.85 REMARK 200 R MERGE FOR SHELL (I) : 1.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6ETS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 180MM AMMONIUM SULPHATE, REMARK 280 24% PEG 3350, PH 7, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.47300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.94100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.94100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.20950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.94100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.94100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.73650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.94100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.94100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.20950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.94100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.94100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.73650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.47300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 724 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 MET A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 CYS A 10 REMARK 465 GLN A 340 REMARK 465 ASP A 341 REMARK 465 ARG A 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 186 -6.74 72.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 939 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 406 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 GLU A 194 OE2 98.9 REMARK 620 3 HIS A 280 NE2 85.9 89.4 REMARK 620 4 FJB A 407 O 87.3 171.0 97.7 REMARK 620 5 FJB A 407 NAD 85.3 121.4 148.9 52.2 REMARK 620 6 FJB A 407 NAE 92.0 93.2 176.9 79.9 28.3 REMARK 620 7 HOH A 640 O 169.2 91.1 90.1 83.3 93.0 91.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 238 SG REMARK 620 2 HIS A 244 NE2 110.5 REMARK 620 3 CYS A 310 SG 116.2 108.4 REMARK 620 4 CYS A 312 SG 113.3 100.7 106.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FJB A 407 DBREF 6H0X A 1 342 UNP Q6B0I6 KDM4D_HUMAN 1 342 SEQRES 1 A 342 MET GLU THR MET LYS SER LYS ALA ASN CYS ALA GLN ASN SEQRES 2 A 342 PRO ASN CYS ASN ILE MET ILE PHE HIS PRO THR LYS GLU SEQRES 3 A 342 GLU PHE ASN ASP PHE ASP LYS TYR ILE ALA TYR MET GLU SEQRES 4 A 342 SER GLN GLY ALA HIS ARG ALA GLY LEU ALA LYS ILE ILE SEQRES 5 A 342 PRO PRO LYS GLU TRP LYS ALA ARG GLU THR TYR ASP ASN SEQRES 6 A 342 ILE SER GLU ILE LEU ILE ALA THR PRO LEU GLN GLN VAL SEQRES 7 A 342 ALA SER GLY ARG ALA GLY VAL PHE THR GLN TYR HIS LYS SEQRES 8 A 342 LYS LYS LYS ALA MET THR VAL GLY GLU TYR ARG HIS LEU SEQRES 9 A 342 ALA ASN SER LYS LYS TYR GLN THR PRO PRO HIS GLN ASN SEQRES 10 A 342 PHE GLU ASP LEU GLU ARG LYS TYR TRP LYS ASN ARG ILE SEQRES 11 A 342 TYR ASN SER PRO ILE TYR GLY ALA ASP ILE SER GLY SER SEQRES 12 A 342 LEU PHE ASP GLU ASN THR LYS GLN TRP ASN LEU GLY HIS SEQRES 13 A 342 LEU GLY THR ILE GLN ASP LEU LEU GLU LYS GLU CYS GLY SEQRES 14 A 342 VAL VAL ILE GLU GLY VAL ASN THR PRO TYR LEU TYR PHE SEQRES 15 A 342 GLY MET TRP LYS THR THR PHE ALA TRP HIS THR GLU ASP SEQRES 16 A 342 MET ASP LEU TYR SER ILE ASN TYR LEU HIS LEU GLY GLU SEQRES 17 A 342 PRO LYS THR TRP TYR VAL VAL PRO PRO GLU HIS GLY GLN SEQRES 18 A 342 ARG LEU GLU ARG LEU ALA ARG GLU LEU PHE PRO GLY SER SEQRES 19 A 342 SER ARG GLY CYS GLY ALA PHE LEU ARG HIS LYS VAL ALA SEQRES 20 A 342 LEU ILE SER PRO THR VAL LEU LYS GLU ASN GLY ILE PRO SEQRES 21 A 342 PHE ASN ARG ILE THR GLN GLU ALA GLY GLU PHE MET VAL SEQRES 22 A 342 THR PHE PRO TYR GLY TYR HIS ALA GLY PHE ASN HIS GLY SEQRES 23 A 342 PHE ASN CYS ALA GLU ALA ILE ASN PHE ALA THR PRO ARG SEQRES 24 A 342 TRP ILE ASP TYR GLY LYS MET ALA SER GLN CYS SER CYS SEQRES 25 A 342 GLY GLU ALA ARG VAL THR PHE SER MET ASP ALA PHE VAL SEQRES 26 A 342 ARG ILE LEU GLN PRO GLU ARG TYR ASP LEU TRP LYS ARG SEQRES 27 A 342 GLY GLN ASP ARG HET ZN A 401 1 HET CL A 402 1 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET NI A 406 1 HET FJB A 407 43 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NI NICKEL (II) ION HETNAM FJB [[(2~{R})-2-(5-PHENYLPENTANOYLAMINO)-2-(2~{H}-1,2,3,4- HETNAM 2 FJB TETRAZOL-5-YL)ETHANOYL]AMINO]AZANIUM HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 NI NI 2+ FORMUL 8 FJB C14 H20 N7 O2 1+ FORMUL 9 HOH *439(H2 O) HELIX 1 AA1 GLU A 26 ASN A 29 5 4 HELIX 2 AA2 ASP A 30 GLN A 41 1 12 HELIX 3 AA3 GLY A 42 ALA A 46 5 5 HELIX 4 AA4 VAL A 98 ASN A 106 1 9 HELIX 5 AA5 ASN A 117 ARG A 129 1 13 HELIX 6 AA6 ILE A 130 ASN A 132 5 3 HELIX 7 AA7 THR A 159 GLY A 169 1 11 HELIX 8 AA8 GLU A 194 LEU A 198 5 5 HELIX 9 AA9 PRO A 216 GLU A 218 5 3 HELIX 10 AB1 HIS A 219 PHE A 231 1 13 HELIX 11 AB2 PHE A 231 CYS A 238 1 8 HELIX 12 AB3 ALA A 240 LYS A 245 5 6 HELIX 13 AB4 SER A 250 ASN A 257 1 8 HELIX 14 AB5 ARG A 299 ALA A 307 1 9 HELIX 15 AB6 MET A 321 GLN A 329 1 9 HELIX 16 AB7 GLN A 329 GLY A 339 1 11 SHEET 1 AA110 MET A 19 PHE A 21 0 SHEET 2 AA110 LEU A 48 ILE A 51 1 O LYS A 50 N PHE A 21 SHEET 3 AA110 PHE A 271 THR A 274 -1 O PHE A 271 N ILE A 51 SHEET 4 AA110 TYR A 199 GLY A 207 -1 N ASN A 202 O MET A 272 SHEET 5 AA110 ASN A 288 PHE A 295 -1 O GLU A 291 N TYR A 203 SHEET 6 AA110 TYR A 179 GLY A 183 -1 N TYR A 179 O ALA A 292 SHEET 7 AA110 ILE A 135 SER A 141 -1 N GLY A 137 O PHE A 182 SHEET 8 AA110 LEU A 75 ARG A 82 -1 N LEU A 75 O TYR A 136 SHEET 9 AA110 VAL A 85 LYS A 92 -1 O LYS A 91 N GLN A 76 SHEET 10 AA110 ALA A 247 ILE A 249 -1 O LEU A 248 N PHE A 86 SHEET 1 AA2 2 LEU A 70 ILE A 71 0 SHEET 2 AA2 2 MET A 96 THR A 97 -1 O MET A 96 N ILE A 71 SHEET 1 AA3 4 THR A 188 HIS A 192 0 SHEET 2 AA3 4 HIS A 280 ASN A 284 -1 O GLY A 282 N PHE A 189 SHEET 3 AA3 4 LYS A 210 VAL A 214 -1 N TYR A 213 O ALA A 281 SHEET 4 AA3 4 ASN A 262 GLN A 266 -1 O ILE A 264 N TRP A 212 LINK NE2 HIS A 192 NI NI A 406 1555 1555 2.27 LINK OE2 GLU A 194 NI NI A 406 1555 1555 2.07 LINK SG CYS A 238 ZN ZN A 401 1555 1555 2.22 LINK NE2 HIS A 244 ZN ZN A 401 1555 1555 2.05 LINK NE2 HIS A 280 NI NI A 406 1555 1555 2.13 LINK SG CYS A 310 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 312 ZN ZN A 401 1555 1555 2.29 LINK NI NI A 406 O FJB A 407 1555 1555 2.22 LINK NI NI A 406 NAD FJB A 407 1555 1555 2.74 LINK NI NI A 406 NAE FJB A 407 1555 1555 2.13 LINK NI NI A 406 O HOH A 640 1555 1555 2.23 SITE 1 AC1 4 CYS A 238 HIS A 244 CYS A 310 CYS A 312 SITE 1 AC2 2 ASN A 128 LYS A 186 SITE 1 AC3 2 LYS A 124 ASN A 128 SITE 1 AC4 3 PRO A 251 THR A 252 ARG A 263 SITE 1 AC5 8 TYR A 181 GLU A 194 ALA A 292 ASN A 294 SITE 2 AC5 8 THR A 318 FJB A 407 HOH A 649 HOH A 735 SITE 1 AC6 5 HIS A 192 GLU A 194 HIS A 280 FJB A 407 SITE 2 AC6 5 HOH A 640 SITE 1 AC7 18 HIS A 90 TYR A 136 TYR A 181 HIS A 192 SITE 2 AC7 18 GLU A 194 ASN A 202 LYS A 210 LYS A 245 SITE 3 AC7 18 HIS A 280 ARG A 316 EDO A 405 NI A 406 SITE 4 AC7 18 HOH A 620 HOH A 640 HOH A 649 HOH A 680 SITE 5 AC7 18 HOH A 687 HOH A 735 CRYST1 71.882 71.882 150.946 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006625 0.00000