HEADER TRANSCRIPTION 11-JUL-18 6H1I TITLE CRYSTAL STRUCTURE OF HUMAN PIRIN IN COMPLEX WITH BISAMIDE COMPOUND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROBABLE QUERCETIN 2,3-DIOXYGENASE PIR,PROBABLE COMPND 5 QUERCETINASE; COMPND 6 EC: 1.13.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTIONAL COREGULATOR, QUERCETIN 2, 3-DIOXYGENASE, INHIBITOR, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.ALI,Y.V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 17-JAN-24 6H1I 1 REMARK REVDAT 2 16-JAN-19 6H1I 1 JRNL REVDAT 1 28-NOV-18 6H1I 0 JRNL AUTH J.MEYERS,N.E.A.CHESSUM,S.ALI,N.Y.MOK,B.WILDING,A.E.PASQUA, JRNL AUTH 2 M.ROWLANDS,M.J.TUCKER,L.E.EVANS,C.S.RYE,L.O'FEE, JRNL AUTH 3 Y.V.LE BIHAN,R.BURKE,M.CARTER,P.WORKMAN,J.BLAGG,N.BROWN, JRNL AUTH 4 R.L.M.VAN MONTFORT,K.JONES,M.D.CHEESEMAN JRNL TITL PRIVILEGED STRUCTURES AND POLYPHARMACOLOGY WITHIN AND JRNL TITL 2 BETWEEN PROTEIN FAMILIES. JRNL REF ACS MED CHEM LETT V. 9 1199 2018 JRNL REFN ISSN 1948-5875 JRNL PMID 30613326 JRNL DOI 10.1021/ACSMEDCHEMLETT.8B00364 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 33699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 674 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2423 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 633 REMARK 3 BIN R VALUE (WORKING SET) : 0.2439 REMARK 3 BIN FREE R VALUE : 0.2183 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30120 REMARK 3 B22 (A**2) : 3.55870 REMARK 3 B33 (A**2) : -3.25750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.109 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.111 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.101 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2373 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3229 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 821 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 442 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2373 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 299 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 23 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3058 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|4 - 26} REMARK 3 ORIGIN FOR THE GROUP (A): -11.4907 -3.1868 3.4716 REMARK 3 T TENSOR REMARK 3 T11: -0.0898 T22: 0.1459 REMARK 3 T33: -0.1219 T12: -0.0014 REMARK 3 T13: 0.0014 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.2083 L22: 3.7020 REMARK 3 L33: 2.3239 L12: 0.5982 REMARK 3 L13: -0.3105 L23: 0.9829 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: 0.3631 S13: -0.0105 REMARK 3 S21: -0.2211 S22: 0.0843 S23: -0.0826 REMARK 3 S31: -0.0902 S32: -0.0941 S33: -0.1088 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|27 - 55} REMARK 3 ORIGIN FOR THE GROUP (A): -11.5307 -9.0602 6.9928 REMARK 3 T TENSOR REMARK 3 T11: -0.0941 T22: 0.0585 REMARK 3 T33: -0.0748 T12: -0.0060 REMARK 3 T13: 0.0067 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 5.6828 L22: 0.3909 REMARK 3 L33: 0.8100 L12: -0.2150 REMARK 3 L13: 0.2949 L23: -0.4069 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.4186 S13: 0.2975 REMARK 3 S21: -0.0669 S22: -0.0135 S23: 0.0159 REMARK 3 S31: 0.0969 S32: -0.0353 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|56 - 119} REMARK 3 ORIGIN FOR THE GROUP (A): -18.1992 -14.6801 15.6813 REMARK 3 T TENSOR REMARK 3 T11: -0.0702 T22: 0.0761 REMARK 3 T33: -0.0096 T12: 0.0079 REMARK 3 T13: 0.0173 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.3313 L22: 0.6301 REMARK 3 L33: 0.5144 L12: 0.4013 REMARK 3 L13: -0.4515 L23: 0.1435 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: -0.0098 S13: -0.0508 REMARK 3 S21: 0.0268 S22: 0.1128 S23: 0.1374 REMARK 3 S31: 0.0728 S32: -0.0502 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|120 - 138} REMARK 3 ORIGIN FOR THE GROUP (A): -9.8604 -16.4192 23.6643 REMARK 3 T TENSOR REMARK 3 T11: -0.0242 T22: 0.1057 REMARK 3 T33: -0.0531 T12: 0.0256 REMARK 3 T13: 0.0298 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.9107 L22: 1.5999 REMARK 3 L33: 0.8557 L12: -1.0403 REMARK 3 L13: -0.9427 L23: 0.1664 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.1063 S13: -0.0778 REMARK 3 S21: 0.1539 S22: 0.0184 S23: 0.0740 REMARK 3 S31: 0.0957 S32: 0.0840 S33: 0.0305 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|139 - 168} REMARK 3 ORIGIN FOR THE GROUP (A): -12.3064 0.3075 26.8827 REMARK 3 T TENSOR REMARK 3 T11: -0.0156 T22: 0.0316 REMARK 3 T33: -0.0562 T12: 0.0385 REMARK 3 T13: 0.0090 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.5225 L22: 2.3042 REMARK 3 L33: 0.4367 L12: -0.6363 REMARK 3 L13: -0.8450 L23: 1.1069 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: -0.0969 S13: 0.2300 REMARK 3 S21: 0.2280 S22: 0.0702 S23: -0.0299 REMARK 3 S31: -0.1111 S32: 0.0534 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|169 - 185} REMARK 3 ORIGIN FOR THE GROUP (A): -12.0727 7.6576 20.3706 REMARK 3 T TENSOR REMARK 3 T11: -0.0224 T22: 0.0183 REMARK 3 T33: 0.0036 T12: 0.0250 REMARK 3 T13: -0.0002 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.2877 L22: 1.6406 REMARK 3 L33: 1.3343 L12: -0.7587 REMARK 3 L13: -0.1304 L23: -0.6644 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0388 S13: 0.2789 REMARK 3 S21: 0.0711 S22: 0.0763 S23: 0.1143 REMARK 3 S31: -0.2669 S32: -0.0410 S33: -0.0998 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|186 - 243} REMARK 3 ORIGIN FOR THE GROUP (A): -8.4663 8.4119 12.9944 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: -0.0073 REMARK 3 T33: -0.0393 T12: -0.0156 REMARK 3 T13: 0.0027 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.7507 L22: 2.1372 REMARK 3 L33: 1.9604 L12: -0.7490 REMARK 3 L13: 0.0633 L23: 0.0643 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.2068 S13: 0.3148 REMARK 3 S21: -0.0970 S22: 0.0887 S23: -0.1394 REMARK 3 S31: -0.4353 S32: 0.1549 S33: -0.0790 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|244 - 272} REMARK 3 ORIGIN FOR THE GROUP (A): -0.0037 -21.6025 10.8318 REMARK 3 T TENSOR REMARK 3 T11: -0.1076 T22: 0.0845 REMARK 3 T33: -0.0848 T12: 0.0123 REMARK 3 T13: 0.0256 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.5390 L22: 1.9262 REMARK 3 L33: 1.4227 L12: -0.9998 REMARK 3 L13: -1.1154 L23: 0.0135 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: 0.3452 S13: -0.2232 REMARK 3 S21: 0.0184 S22: 0.1484 S23: 0.1405 REMARK 3 S31: 0.3320 S32: 0.1483 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|273 - 290} REMARK 3 ORIGIN FOR THE GROUP (A): -16.6306 -30.7520 13.0751 REMARK 3 T TENSOR REMARK 3 T11: -0.0433 T22: -0.0742 REMARK 3 T33: 0.1575 T12: -0.0540 REMARK 3 T13: 0.0662 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.3269 L22: 0.3048 REMARK 3 L33: 1.6142 L12: 0.1453 REMARK 3 L13: -1.5595 L23: 0.4177 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.0050 S13: -0.3097 REMARK 3 S21: -0.2036 S22: -0.0089 S23: 0.2078 REMARK 3 S31: 0.5007 S32: -0.0975 S33: 0.0459 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 41.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 1.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JCT REMARK 200 REMARK 200 REMARK: NEEDLE-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MICROLITER OF PROTEIN 50 MG/ML AND 1 REMARK 280 MICROLITER OF RESERVOIR SOLUTION CONTAINING 0.1 M HEPES (PH 7.5), REMARK 280 8 % ETHYLENE GLYCOL, 20 % (W/V) PEG 8,000, PLACED OVER 200 REMARK 280 MICROLITERS OF RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.02700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.62200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.57600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.62200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.02700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.57600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 NE CZ NH1 NH2 REMARK 470 ARG A 25 NH2 REMARK 470 LYS A 34 CD CE NZ REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 GLU A 128 OE1 OE2 REMARK 470 GLN A 130 NE2 REMARK 470 LYS A 135 CE NZ REMARK 470 GLU A 137 CD OE1 OE2 REMARK 470 GLU A 138 OE1 REMARK 470 ASP A 145 OD2 REMARK 470 LYS A 160 NZ REMARK 470 LYS A 162 CD CE NZ REMARK 470 LYS A 181 CE NZ REMARK 470 LYS A 188 CD CE NZ REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 GLU A 222 CD OE1 OE2 REMARK 470 ASP A 224 OD1 OD2 REMARK 470 GLU A 262 CD OE1 OE2 REMARK 470 LEU A 269 CD1 REMARK 470 ARG A 272 CD NE CZ NH1 NH2 REMARK 470 ARG A 280 NE CZ NH1 NH2 REMARK 470 LYS A 282 CD CE NZ REMARK 470 THR A 283 OG1 CG2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 287 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 27 -103.82 -98.55 REMARK 500 LEU A 36 73.34 -156.83 REMARK 500 LEU A 36 73.34 -151.00 REMARK 500 ASP A 55 108.92 -36.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 34 11.31 REMARK 500 LYS A 34 11.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 58 NE2 93.3 REMARK 620 3 HIS A 101 NE2 95.5 97.0 REMARK 620 4 GLU A 103 OE2 92.2 172.8 77.9 REMARK 620 5 HOH A 406 O 93.0 93.0 166.5 91.2 REMARK 620 6 HOH A 504 O 169.7 96.7 85.5 78.0 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FJH A 305 DBREF 6H1I A 1 290 UNP O00625 PIR_HUMAN 1 290 SEQADV 6H1I GLY A -2 UNP O00625 EXPRESSION TAG SEQADV 6H1I SER A -1 UNP O00625 EXPRESSION TAG SEQADV 6H1I HIS A 0 UNP O00625 EXPRESSION TAG SEQRES 1 A 293 GLY SER HIS MET GLY SER SER LYS LYS VAL THR LEU SER SEQRES 2 A 293 VAL LEU SER ARG GLU GLN SER GLU GLY VAL GLY ALA ARG SEQRES 3 A 293 VAL ARG ARG SER ILE GLY ARG PRO GLU LEU LYS ASN LEU SEQRES 4 A 293 ASP PRO PHE LEU LEU PHE ASP GLU PHE LYS GLY GLY ARG SEQRES 5 A 293 PRO GLY GLY PHE PRO ASP HIS PRO HIS ARG GLY PHE GLU SEQRES 6 A 293 THR VAL SER TYR LEU LEU GLU GLY GLY SER MET ALA HIS SEQRES 7 A 293 GLU ASP PHE CYS GLY HIS THR GLY LYS MET ASN PRO GLY SEQRES 8 A 293 ASP LEU GLN TRP MET THR ALA GLY ARG GLY ILE LEU HIS SEQRES 9 A 293 ALA GLU MET PRO CYS SER GLU GLU PRO ALA HIS GLY LEU SEQRES 10 A 293 GLN LEU TRP VAL ASN LEU ARG SER SER GLU LYS MET VAL SEQRES 11 A 293 GLU PRO GLN TYR GLN GLU LEU LYS SER GLU GLU ILE PRO SEQRES 12 A 293 LYS PRO SER LYS ASP GLY VAL THR VAL ALA VAL ILE SER SEQRES 13 A 293 GLY GLU ALA LEU GLY ILE LYS SER LYS VAL TYR THR ARG SEQRES 14 A 293 THR PRO THR LEU TYR LEU ASP PHE LYS LEU ASP PRO GLY SEQRES 15 A 293 ALA LYS HIS SER GLN PRO ILE PRO LYS GLY TRP THR SER SEQRES 16 A 293 PHE ILE TYR THR ILE SER GLY ASP VAL TYR ILE GLY PRO SEQRES 17 A 293 ASP ASP ALA GLN GLN LYS ILE GLU PRO HIS HIS THR ALA SEQRES 18 A 293 VAL LEU GLY GLU GLY ASP SER VAL GLN VAL GLU ASN LYS SEQRES 19 A 293 ASP PRO LYS ARG SER HIS PHE VAL LEU ILE ALA GLY GLU SEQRES 20 A 293 PRO LEU ARG GLU PRO VAL ILE GLN HIS GLY PRO PHE VAL SEQRES 21 A 293 MET ASN THR ASN GLU GLU ILE SER GLN ALA ILE LEU ASP SEQRES 22 A 293 PHE ARG ASN ALA LYS ASN GLY PHE GLU ARG ALA LYS THR SEQRES 23 A 293 TRP LYS SER LYS ILE GLY ASN HET FE A 301 1 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET FJH A 305 34 HETNAM FE FE (III) ION HETNAM GOL GLYCEROL HETNAM FJH ~{N}-[5-(2,3-DIHYDRO-1,4-BENZODIOXIN-6- HETNAM 2 FJH YLCARBONYLAMINO)-2-METHYL-PHENYL]-2-METHYL-QUINOLINE- HETNAM 3 FJH 6-CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE FE 3+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 FJH C27 H23 N3 O4 FORMUL 7 HOH *272(H2 O) HELIX 1 AA1 ARG A 30 LYS A 34 5 5 HELIX 2 AA2 ARG A 121 LYS A 125 5 5 HELIX 3 AA3 LYS A 135 ILE A 139 5 5 HELIX 4 AA4 PRO A 205 GLN A 209 5 5 HELIX 5 AA5 THR A 260 ASN A 273 1 14 HELIX 6 AA6 PHE A 278 LYS A 282 5 5 SHEET 1 AA1 7 VAL A 7 LEU A 12 0 SHEET 2 AA1 7 HIS A 216 LEU A 220 -1 O VAL A 219 N LEU A 9 SHEET 3 AA1 7 THR A 191 SER A 198 -1 N ILE A 194 O ALA A 218 SHEET 4 AA1 7 SER A 236 GLY A 243 -1 O ILE A 241 N PHE A 193 SHEET 5 AA1 7 THR A 169 LEU A 176 -1 N LEU A 170 O ALA A 242 SHEET 6 AA1 7 VAL A 147 SER A 153 -1 N THR A 148 O LYS A 175 SHEET 7 AA1 7 SER A 143 LYS A 144 -1 N LYS A 144 O VAL A 147 SHEET 1 AA2 7 GLU A 15 GLU A 18 0 SHEET 2 AA2 7 ALA A 22 ARG A 26 -1 O VAL A 24 N GLN A 16 SHEET 3 AA2 7 PHE A 39 GLY A 47 -1 O GLU A 44 N ARG A 25 SHEET 4 AA2 7 ALA A 111 ASN A 119 -1 O GLY A 113 N PHE A 45 SHEET 5 AA2 7 PHE A 61 LEU A 67 -1 N GLU A 62 O VAL A 118 SHEET 6 AA2 7 LEU A 90 THR A 94 -1 O MET A 93 N THR A 63 SHEET 7 AA2 7 GLN A 130 LEU A 134 -1 O GLN A 132 N TRP A 92 SHEET 1 AA3 4 PHE A 53 HIS A 58 0 SHEET 2 AA3 4 ILE A 99 PRO A 105 -1 O GLU A 103 N PHE A 53 SHEET 3 AA3 4 MET A 73 ASP A 77 -1 N ALA A 74 O MET A 104 SHEET 4 AA3 4 THR A 82 MET A 85 -1 O MET A 85 N MET A 73 SHEET 1 AA4 2 GLU A 155 ALA A 156 0 SHEET 2 AA4 2 ILE A 159 LYS A 160 -1 O ILE A 159 N ALA A 156 SHEET 1 AA5 4 LYS A 181 PRO A 185 0 SHEET 2 AA5 4 SER A 225 GLU A 229 -1 O VAL A 226 N GLN A 184 SHEET 3 AA5 4 VAL A 201 ILE A 203 -1 N TYR A 202 O GLU A 229 SHEET 4 AA5 4 GLN A 210 ILE A 212 -1 O ILE A 212 N VAL A 201 SHEET 1 AA6 2 ILE A 251 HIS A 253 0 SHEET 2 AA6 2 PHE A 256 MET A 258 -1 O PHE A 256 N HIS A 253 LINK NE2 HIS A 56 FE FE A 301 1555 1555 2.06 LINK NE2 HIS A 58 FE FE A 301 1555 1555 2.10 LINK NE2 HIS A 101 FE FE A 301 1555 1555 2.18 LINK OE2 GLU A 103 FE FE A 301 1555 1555 2.51 LINK FE FE A 301 O AHOH A 406 1555 1555 2.06 LINK FE FE A 301 O HOH A 504 1555 1555 2.38 CISPEP 1 ASP A 37 PRO A 38 0 9.96 CISPEP 2 ARG A 49 PRO A 50 0 2.50 SITE 1 AC1 6 HIS A 56 HIS A 58 HIS A 101 GLU A 103 SITE 2 AC1 6 HOH A 406 HOH A 504 SITE 1 AC2 6 SER A 122 GLU A 248 ASN A 259 THR A 260 SITE 2 AC2 6 GLU A 263 HOH A 553 SITE 1 AC3 8 TYR A 66 LEU A 67 LEU A 68 GLY A 88 SITE 2 AC3 8 SER A 136 ASP A 173 LYS A 175 HIS A 237 SITE 1 AC4 7 GLU A 15 ARG A 23 ARG A 25 GLU A 44 SITE 2 AC4 7 PHE A 45 LYS A 46 HOH A 402 SITE 1 AC5 14 GLU A 18 ARG A 26 LEU A 41 ASP A 43 SITE 2 AC5 14 PHE A 45 PHE A 53 PRO A 54 HIS A 56 SITE 3 AC5 14 MET A 73 GLY A 113 LEU A 114 GLN A 115 SITE 4 AC5 14 TRP A 117 HOH A 406 CRYST1 42.054 67.152 107.244 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009325 0.00000