data_6H3E # _entry.id 6H3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6H3E pdb_00006h3e 10.2210/pdb6h3e/pdb WWPDB D_1200008787 ? ? BMRB 34303 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Receptor-bound Ghrelin conformation' _pdbx_database_related.db_id 34303 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6H3E _pdbx_database_status.recvd_initial_deposition_date 2018-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category 'GPCR Dock' _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ferre, G.' 1 ? 'Damian, M.' 2 ? ;M'Kadmi, C. ; 3 ? 'Saurel, O.' 4 ? 'Czaplicki, G.' 5 ? 'Demange, P.' 6 ? 'Marie, J.' 7 ? 'Fehrentz, J.A.' 8 ? 'Baneres, J.L.' 9 ? 'Milon, A.' 10 0000-0001-5692-8201 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 116 _citation.language ? _citation.page_first 17525 _citation.page_last 17530 _citation.title 'Structure and dynamics of G protein-coupled receptor-bound ghrelin reveal the critical role of the octanoyl chain.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1905105116 _citation.pdbx_database_id_PubMed 31416915 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ferre, G.' 1 ? primary 'Louet, M.' 2 ? primary 'Saurel, O.' 3 ? primary 'Delort, B.' 4 ? primary 'Czaplicki, G.' 5 ? primary ;M'Kadmi, C. ; 6 ? primary 'Damian, M.' 7 ? primary 'Renault, P.' 8 ? primary 'Cantel, S.' 9 ? primary 'Gavara, L.' 10 ? primary 'Demange, P.' 11 0000-0002-9572-9990 primary 'Marie, J.' 12 ? primary 'Fehrentz, J.A.' 13 ? primary 'Floquet, N.' 14 ? primary 'Milon, A.' 15 0000-0001-5692-8201 primary 'Baneres, J.L.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Appetite-regulating hormone' 2130.301 1 ? S3D ? ? 2 non-polymer syn octan-1-amine 129.243 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Growth hormone secretagogue,Growth hormone-releasing peptide,Motilin-related peptide,Protein M46' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GSDFLSPEHQRVQQRKES(NH2)' _entity_poly.pdbx_seq_one_letter_code_can GSDFLSPEHQRVQQRKESX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 PHE n 1 5 LEU n 1 6 SER n 1 7 PRO n 1 8 GLU n 1 9 HIS n 1 10 GLN n 1 11 ARG n 1 12 VAL n 1 13 GLN n 1 14 GLN n 1 15 ARG n 1 16 LYS n 1 17 GLU n 1 18 SER n 1 19 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 19 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GHRL_HUMAN _struct_ref.pdbx_db_accession Q9UBU3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GSSFLSPEHQRVQQRKES _struct_ref.pdbx_align_begin 24 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6H3E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 18 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UBU3 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6H3E ASP A 3 ? UNP Q9UBU3 SER 26 'engineered mutation' 3 1 1 6H3E NH2 A 19 ? UNP Q9UBU3 ? ? amidation 19 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FKZ non-polymer . octan-1-amine ? 'C8 H19 N' 129.243 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 6 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic 5 1 2 '2D 1H-1H TOCSY' 1 isotropic 3 1 3 '3D 1H-1H-15N NOESY-HMQC' 1 isotropic 7 1 3 '2D 1H-15N SOFAST-HMQC' 1 isotropic 4 1 4 '3D 1H-1H-15N NOESY-HMQC' 1 isotropic 8 1 4 '2D 1H-15N SOFAST-HMQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 280 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 KCl' _pdbx_nmr_exptl_sample_conditions.details 'The buffer is 20mM [U-2H]-MES pH 6.5, 100mM KCl, 100uM DSS, 10%vol D2O.' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'Conditions for all samples' _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.37 mM [U-15N]-Phe-Leu-Val Ghrelin 1-18, 2.05 uM [U-2H] Ghrelin receptor, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Ghrelin total binding for 1H1H-NOESY' solution 'Ghrelin receptor (growth hormone secretagogue receptor, GHSR) reconstituted in POPC/POPG 3/2 mol/mol nanodiscs.' 2 '1.37 mM [U-15N]-Phe-Leu-Val Ghrelin 1-18, 2.05 uM [U-2H] Ghrelin receptor, 2.05 uM JMV5327, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Ghrelin unspecific binding for 1H1H-NOESY' solution 'Ghrelin receptor (growth hormone secretagogue receptor, GHSR) reconstituted in POPC/POPG 3/2 mol/mol nanodiscs.' 3 '1.15 mM [U-15N]-Phe-Leu-Val-Ser-Gln-Glu Ghrelin 1-18, 1.72 uM [U-2H] Ghrelin receptor, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Ghrelin total binding for 1H1H15N-NOESY-HMQC' solution 'Ghrelin receptor (growth hormone secretagogue receptor, GHSR) reconstituted in POPC/POPG 3/2 mol/mol nanodiscs.' 4 '1.15 mM [U-15N]-Phe-Leu-Val-Ser-Gln-Glu Ghrelin 1-18, 1.72 uM [U-2H] Ghrelin receptor, 1.72 uM JMV5327, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Ghrelin unspecific binding for 1H1H15N-NOESY-HMQC' solution 'Ghrelin receptor (growth hormone secretagogue receptor, GHSR) reconstituted in POPC/POPG 3/2 mol/mol nanodiscs.' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6H3E _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 6H3E _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6H3E _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.5 'Bruker Biospin' 4 processing TopSpin 3.2 'Bruker Biospin' 2 'peak picking' Sparky 1.2 ;T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco ; 3 'structure calculation' Amber 14 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6H3E _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6H3E _struct.title 'Receptor-bound Ghrelin conformation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6H3E _struct_keywords.text 'Neuropeptide, acyl chain, growth hormone secretagogue receptor, GPCR, lipopeptide hormone, obesity, diabetes, addiction., HORMONE' _struct_keywords.pdbx_keywords HORMONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A ASP 3 CG ? ? ? 1_555 B FKZ . N ? ? A ASP 3 A FKZ 101 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale2 covale both ? A SER 18 C ? ? ? 1_555 A NH2 19 N ? ? A SER 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.324 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FKZ 101 ? 5 'binding site for residue FKZ A 101' AC2 Software A NH2 19 ? 1 'binding site for Ligand NH2 A 19 bound to SER A 18' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 3 ? ASP A 3 . ? 1_555 ? 2 AC1 5 PHE A 4 ? PHE A 4 . ? 1_555 ? 3 AC1 5 SER A 6 ? SER A 6 . ? 1_555 ? 4 AC1 5 GLU A 8 ? GLU A 8 . ? 1_555 ? 5 AC1 5 HIS A 9 ? HIS A 9 . ? 1_555 ? 6 AC2 1 SER A 18 ? SER A 18 . ? 1_555 ? # _atom_sites.entry_id 6H3E _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 NH2 19 19 19 NH2 NH2 A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FKZ _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 20 _pdbx_nonpoly_scheme.pdb_mon_id FKZ _pdbx_nonpoly_scheme.auth_mon_id OCT _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 100 ? 1 MORE 0 ? 1 'SSA (A^2)' 2140 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-24 2 'Structure model' 1 1 2019-08-21 3 'Structure model' 1 2 2019-08-28 4 'Structure model' 1 3 2019-09-04 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Database references' 8 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.pdbx_database_id_PubMed' 10 3 'Structure model' '_citation.title' 11 4 'Structure model' '_citation.journal_volume' 12 4 'Structure model' '_citation.page_first' 13 4 'Structure model' '_citation.page_last' 14 4 'Structure model' '_citation_author.identifier_ORCID' 15 5 'Structure model' '_database_2.pdbx_DOI' 16 5 'Structure model' '_database_2.pdbx_database_accession' 17 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Ghrelin 1-18' 1.37 ? mM '[U-15N]-Phe-Leu-Val' 1 'Ghrelin receptor' 2.05 ? uM '[U-2H]' 2 'Ghrelin 1-18' 1.37 ? mM '[U-15N]-Phe-Leu-Val' 2 'Ghrelin receptor' 2.05 ? uM '[U-2H]' 2 JMV5327 2.05 ? uM 'natural abundance' 3 'Ghrelin 1-18' 1.15 ? mM '[U-15N]-Phe-Leu-Val-Ser-Gln-Glu' 3 'Ghrelin receptor' 1.72 ? uM '[U-2H]' 4 'Ghrelin 1-18' 1.15 ? mM '[U-15N]-Phe-Leu-Val-Ser-Gln-Glu' 4 'Ghrelin receptor' 1.72 ? uM '[U-2H]' 4 JMV5327 1.72 ? uM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH2 A ARG 15 ? ? 123.59 120.30 3.29 0.50 N 2 3 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 124.18 120.30 3.88 0.50 N 3 4 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH2 A ARG 15 ? ? 123.52 120.30 3.22 0.50 N 4 7 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH2 A ARG 11 ? ? 123.85 120.30 3.55 0.50 N 5 10 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 123.63 120.30 3.33 0.50 N 6 10 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH2 A ARG 15 ? ? 123.54 120.30 3.24 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? -173.60 140.63 2 1 LEU A 5 ? ? 82.46 145.24 3 1 SER A 6 ? ? -172.00 145.40 4 1 HIS A 9 ? ? 86.89 155.81 5 1 LYS A 16 ? ? -148.66 50.46 6 1 GLU A 17 ? ? 178.99 -44.12 7 2 LEU A 5 ? ? 68.80 149.64 8 2 HIS A 9 ? ? 81.06 154.86 9 2 ARG A 15 ? ? 52.13 -141.19 10 2 GLU A 17 ? ? -148.64 -12.19 11 3 LEU A 5 ? ? 73.13 162.76 12 3 HIS A 9 ? ? 80.36 177.11 13 3 LYS A 16 ? ? -165.53 18.44 14 3 GLU A 17 ? ? -157.49 -28.00 15 4 LEU A 5 ? ? 64.66 162.31 16 4 PRO A 7 ? ? -75.46 20.63 17 4 HIS A 9 ? ? 68.31 172.86 18 4 VAL A 12 ? ? 69.19 109.30 19 4 ARG A 15 ? ? 58.52 11.38 20 5 LEU A 5 ? ? 80.43 159.09 21 5 PRO A 7 ? ? -79.22 20.56 22 5 HIS A 9 ? ? 66.31 72.15 23 5 GLN A 10 ? ? 81.45 8.21 24 5 GLN A 13 ? ? -155.30 -21.00 25 5 LYS A 16 ? ? -125.37 -169.94 26 6 ASP A 3 ? ? -171.93 149.72 27 6 LEU A 5 ? ? 67.82 161.56 28 6 SER A 6 ? ? 159.90 136.83 29 6 HIS A 9 ? ? 89.07 143.76 30 6 GLN A 13 ? ? -146.52 24.11 31 6 GLN A 14 ? ? 176.28 174.35 32 6 ARG A 15 ? ? -149.83 -41.03 33 6 LYS A 16 ? ? -165.98 113.36 34 7 LEU A 5 ? ? 71.09 152.99 35 7 SER A 6 ? ? -168.94 117.54 36 7 PRO A 7 ? ? -78.45 24.56 37 7 GLU A 8 ? ? -125.59 -160.54 38 7 HIS A 9 ? ? 79.76 162.15 39 7 VAL A 12 ? ? -171.25 129.42 40 8 LEU A 5 ? ? 77.51 151.73 41 8 SER A 6 ? ? -175.52 94.90 42 8 PRO A 7 ? ? -79.94 22.07 43 8 HIS A 9 ? ? 75.23 -179.93 44 8 GLN A 13 ? ? -154.86 38.54 45 9 LEU A 5 ? ? 61.96 158.94 46 9 HIS A 9 ? ? 95.81 136.69 47 9 GLN A 10 ? ? 171.32 172.33 48 9 VAL A 12 ? ? 170.28 139.50 49 9 ARG A 15 ? ? 73.09 -23.47 50 9 GLU A 17 ? ? -157.81 -4.02 51 10 LEU A 5 ? ? 77.77 168.79 52 10 HIS A 9 ? ? 88.20 134.65 53 10 GLN A 10 ? ? -154.48 -13.23 54 10 GLN A 14 ? ? 161.62 176.85 55 10 LYS A 16 ? ? -153.59 -1.23 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ANR-17-CE11-0011-03 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name octan-1-amine _pdbx_entity_nonpoly.comp_id FKZ # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details 'The peptide primary structure has been verified by mass spectrometry.' #