HEADER TRANSCRIPTION 19-JUL-18 6H3R TITLE CRYSTAL STRUCTURE OF SMAD2 WITHOUT EXON -MH1 BOUND TO THE CAGAC SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MOTHERS AGAINST DPP HOMOLOG,SMAD FAMILY MEMBER; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*GP*AP*GP*TP*GP*TP*CP*TP*GP*CP*AP*GP*AP*CP*AP*CP*TP*C)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMAD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SMADS, TRANSCRIPTION FACTOR, DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.KACZMARSKA,J.A.MARQUEZ,M.J.MACIAS REVDAT 3 17-JAN-24 6H3R 1 REMARK REVDAT 2 30-SEP-20 6H3R 1 JRNL REVDAT 1 18-SEP-19 6H3R 0 JRNL AUTH E.ARAGON,Q.WANG,Y.ZOU,S.M.MORGANI,L.RUIZ,Z.KACZMARSKA,J.SU, JRNL AUTH 2 C.TORNER,L.TIAN,J.HU,W.SHU,S.AGRAWAL,T.GOMES,J.A.MARQUEZ, JRNL AUTH 3 A.-K.HADJANTONAKIS,M.J.MACIAS,J.MASSAGUE JRNL TITL STRUCTURAL BASIS FOR DISTINCT ROLES OF SMAD2 AND SMAD3 IN JRNL TITL 2 FOXH1 PIONEER-DIRECTED TGF-BETA SIGNALING JRNL REF GENES DEV. 2020 JRNL REFN ISSN 0890-9369 JRNL DOI 10.1101/GAD.330837.119 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 32 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 400 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3079 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 380 REMARK 3 BIN R VALUE (WORKING SET) : 0.3112 REMARK 3 BIN FREE R VALUE : 0.2401 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1909 REMARK 3 NUCLEIC ACID ATOMS : 738 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 116.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89530 REMARK 3 B22 (A**2) : 2.89530 REMARK 3 B33 (A**2) : -5.79060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.730 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.280 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.612 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.276 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2779 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3916 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 852 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 356 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2779 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 356 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2735 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.25 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -16.5124 2.9946 -15.8908 REMARK 3 T TENSOR REMARK 3 T11: -0.0858 T22: 0.0057 REMARK 3 T33: -0.1476 T12: 0.1862 REMARK 3 T13: -0.0568 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 6.2742 L22: 3.0331 REMARK 3 L33: 8.6405 L12: -1.5286 REMARK 3 L13: -2.2988 L23: -0.5845 REMARK 3 S TENSOR REMARK 3 S11: 0.2173 S12: 0.3845 S13: 0.0374 REMARK 3 S21: -0.3568 S22: -0.1880 S23: 0.1567 REMARK 3 S31: 0.2586 S32: 0.6564 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.0718 7.2371 -22.2809 REMARK 3 T TENSOR REMARK 3 T11: -0.0853 T22: -0.1437 REMARK 3 T33: -0.0915 T12: -0.1605 REMARK 3 T13: -0.0456 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 8.6530 L22: 4.8350 REMARK 3 L33: 7.7797 L12: 0.1859 REMARK 3 L13: -3.3647 L23: 2.1618 REMARK 3 S TENSOR REMARK 3 S11: 0.2570 S12: -0.4686 S13: -0.0773 REMARK 3 S21: 0.7298 S22: -0.6244 S23: -0.1743 REMARK 3 S31: -0.3721 S32: -0.4477 S33: 0.3674 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -33.9569 7.9293 0.0525 REMARK 3 T TENSOR REMARK 3 T11: -0.1527 T22: -0.2122 REMARK 3 T33: 0.0390 T12: 0.1054 REMARK 3 T13: -0.0614 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 7.6948 L22: 11.4762 REMARK 3 L33: 2.3791 L12: -5.5271 REMARK 3 L13: 0.2424 L23: 1.1582 REMARK 3 S TENSOR REMARK 3 S11: -0.2851 S12: 0.3284 S13: -0.5798 REMARK 3 S21: 0.2033 S22: 0.1133 S23: 1.0885 REMARK 3 S31: -0.0449 S32: 0.1966 S33: 0.1718 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -32.7910 6.6496 -1.7721 REMARK 3 T TENSOR REMARK 3 T11: -0.1710 T22: -0.1981 REMARK 3 T33: -0.0923 T12: 0.0870 REMARK 3 T13: -0.0769 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 9.8761 L22: 10.1462 REMARK 3 L33: 3.5065 L12: -5.1393 REMARK 3 L13: 0.0232 L23: 1.7447 REMARK 3 S TENSOR REMARK 3 S11: -0.1687 S12: 0.1588 S13: -0.4668 REMARK 3 S21: -0.1668 S22: 0.0001 S23: 1.0885 REMARK 3 S31: 0.1251 S32: 0.0871 S33: 0.1685 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES 6.5 30% PEG300, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.92000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.07000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.88000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.07000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.96000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.07000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.07000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.88000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.07000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.07000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.96000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 40.07000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 40.07000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -35.96000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLY A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 GLU A 171 REMARK 465 THR A 172 REMARK 465 PRO A 173 REMARK 465 SER A 174 REMARK 465 SER A 175 REMARK 465 GLY B 7 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 GLY B 29 REMARK 465 GLY B 30 REMARK 465 GLY B 31 REMARK 465 GLU B 32 REMARK 465 GLN B 33 REMARK 465 GLU B 171 REMARK 465 THR B 172 REMARK 465 PRO B 173 REMARK 465 SER B 174 REMARK 465 SER B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLN A 36 CG CD OE1 NE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 ASN A 148 CG OD1 ND2 REMARK 470 SER B 8 OG REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 ASN B 34 CG OD1 ND2 REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 ASP B 59 CG OD1 OD2 REMARK 470 MET B 70 CG SD CE REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 VAL B 170 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 C5' DG C 1 C4' 0.048 REMARK 500 DT C 4 O3' DT C 4 C3' -0.050 REMARK 500 DT D 4 O3' DT D 4 C3' -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 88 -106.50 63.80 REMARK 500 ARG A 103 -51.87 -135.07 REMARK 500 HIS B 89 -13.19 81.92 REMARK 500 ARG B 103 -60.66 -131.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 74 SG REMARK 620 2 CYS A 149 SG 109.2 REMARK 620 3 CYS A 161 SG 108.5 118.0 REMARK 620 4 HIS A 166 ND1 99.2 107.7 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 149 SG 109.3 REMARK 620 3 CYS B 161 SG 109.3 118.2 REMARK 620 4 HIS B 166 ND1 100.8 109.8 108.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 6H3R A 10 173 UNP B7Z5N5 B7Z5N5_HUMAN 10 143 DBREF 6H3R B 10 173 UNP B7Z5N5 B7Z5N5_HUMAN 10 143 DBREF 6H3R C 1 18 PDB 6H3R 6H3R 1 18 DBREF 6H3R D 1 18 PDB 6H3R 6H3R 1 18 SEQADV 6H3R GLY A 7 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER A 8 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER A 9 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER A 41 UNP B7Z5N5 CYS 41 CONFLICT SEQADV 6H3R MET A 70 UNP B7Z5N5 CYS 70 CONFLICT SEQADV 6H3R SER A 174 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER A 175 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R GLY B 7 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER B 8 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER B 9 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER B 41 UNP B7Z5N5 CYS 41 CONFLICT SEQADV 6H3R MET B 70 UNP B7Z5N5 CYS 70 CONFLICT SEQADV 6H3R SER B 174 UNP B7Z5N5 EXPRESSION TAG SEQADV 6H3R SER B 175 UNP B7Z5N5 EXPRESSION TAG SEQRES 1 A 139 GLY SER SER PRO VAL VAL LYS ARG LEU LEU GLY TRP LYS SEQRES 2 A 139 LYS SER ALA GLY GLY SER GLY GLY ALA GLY GLY GLY GLU SEQRES 3 A 139 GLN ASN GLY GLN GLU GLU LYS TRP SER GLU LYS ALA VAL SEQRES 4 A 139 LYS SER LEU VAL LYS LYS LEU LYS LYS THR GLY ARG LEU SEQRES 5 A 139 ASP GLU LEU GLU LYS ALA ILE THR THR GLN ASN MET ASN SEQRES 6 A 139 THR LYS CYS VAL THR ILE PRO ARG SER LEU ASP GLY ARG SEQRES 7 A 139 LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS VAL ILE SEQRES 8 A 139 TYR CYS ARG LEU TRP ARG TRP PRO ASP LEU HIS SER HIS SEQRES 9 A 139 HIS GLU LEU LYS ALA ILE GLU ASN CYS GLU TYR ALA PHE SEQRES 10 A 139 ASN LEU LYS LYS ASP GLU VAL CYS VAL ASN PRO TYR HIS SEQRES 11 A 139 TYR GLN ARG VAL GLU THR PRO SER SER SEQRES 1 B 139 GLY SER SER PRO VAL VAL LYS ARG LEU LEU GLY TRP LYS SEQRES 2 B 139 LYS SER ALA GLY GLY SER GLY GLY ALA GLY GLY GLY GLU SEQRES 3 B 139 GLN ASN GLY GLN GLU GLU LYS TRP SER GLU LYS ALA VAL SEQRES 4 B 139 LYS SER LEU VAL LYS LYS LEU LYS LYS THR GLY ARG LEU SEQRES 5 B 139 ASP GLU LEU GLU LYS ALA ILE THR THR GLN ASN MET ASN SEQRES 6 B 139 THR LYS CYS VAL THR ILE PRO ARG SER LEU ASP GLY ARG SEQRES 7 B 139 LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS VAL ILE SEQRES 8 B 139 TYR CYS ARG LEU TRP ARG TRP PRO ASP LEU HIS SER HIS SEQRES 9 B 139 HIS GLU LEU LYS ALA ILE GLU ASN CYS GLU TYR ALA PHE SEQRES 10 B 139 ASN LEU LYS LYS ASP GLU VAL CYS VAL ASN PRO TYR HIS SEQRES 11 B 139 TYR GLN ARG VAL GLU THR PRO SER SER SEQRES 1 C 18 DG DA DG DT DG DT DC DT DG DC DA DG DA SEQRES 2 C 18 DC DA DC DT DC SEQRES 1 D 18 DG DA DG DT DG DT DC DT DG DC DA DG DA SEQRES 2 D 18 DC DA DC DT DC HET ZN A 201 1 HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 SER A 9 GLY A 17 1 9 HELIX 2 AA2 GLY A 35 LYS A 54 1 20 HELIX 3 AA3 ARG A 57 GLN A 68 1 12 HELIX 4 AA4 LEU A 93 ARG A 103 1 11 HELIX 5 AA5 SER A 139 HIS A 141 5 3 HELIX 6 AA6 ALA A 152 LYS A 156 5 5 HELIX 7 AA7 ASN A 163 TYR A 165 5 3 HELIX 8 AA8 SER B 9 GLY B 17 1 9 HELIX 9 AA9 GLY B 35 LYS B 54 1 20 HELIX 10 AB1 ARG B 57 GLN B 68 1 12 HELIX 11 AB2 LEU B 93 ARG B 103 1 11 HELIX 12 AB3 SER B 139 HIS B 141 5 3 HELIX 13 AB4 ALA B 152 LYS B 156 5 5 HELIX 14 AB5 ASN B 163 TYR B 165 5 3 SHEET 1 AA1 2 THR A 76 PRO A 78 0 SHEET 2 AA1 2 GLU A 159 CYS A 161 -1 O VAL A 160 N ILE A 77 SHEET 1 AA2 2 LEU A 85 VAL A 87 0 SHEET 2 AA2 2 ARG A 90 GLY A 92 -1 O ARG A 90 N VAL A 87 SHEET 1 AA3 2 LEU A 143 ALA A 145 0 SHEET 2 AA3 2 TYR A 167 ARG A 169 -1 O GLN A 168 N LYS A 144 SHEET 1 AA4 2 THR B 76 PRO B 78 0 SHEET 2 AA4 2 GLU B 159 CYS B 161 -1 O VAL B 160 N ILE B 77 SHEET 1 AA5 2 LEU B 85 VAL B 87 0 SHEET 2 AA5 2 ARG B 90 GLY B 92 -1 O GLY B 92 N LEU B 85 SHEET 1 AA6 2 LEU B 143 ALA B 145 0 SHEET 2 AA6 2 TYR B 167 ARG B 169 -1 O GLN B 168 N LYS B 144 LINK SG CYS A 74 ZN ZN A 201 1555 1555 2.26 LINK SG CYS A 149 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 161 ZN ZN A 201 1555 1555 2.31 LINK ND1 HIS A 166 ZN ZN A 201 1555 1555 2.13 LINK SG CYS B 74 ZN ZN B 201 1555 1555 2.17 LINK SG CYS B 149 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 161 ZN ZN B 201 1555 1555 2.36 LINK ND1 HIS B 166 ZN ZN B 201 1555 1555 2.20 SITE 1 AC1 4 CYS A 74 CYS A 149 CYS A 161 HIS A 166 SITE 1 AC2 4 CYS B 74 CYS B 149 CYS B 161 HIS B 166 CRYST1 80.140 80.140 143.840 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006952 0.00000