HEADER TRANSFERASE 20-JUL-18 6H40 TITLE HIGH RESOLUTION STRUCTURE OF MET1 FROM MYCOBACTERIUM HASSIACUM IN TITLE 2 COMPLEX WITH 3-METHOXY-1,2-PROPANEDIOL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM HASSIACUM DSM 44199; SOURCE 3 ORGANISM_TAXID: 1122247; SOURCE 4 GENE: C731_4163; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS 3-O-METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.B.PEREIRA,J.RIPOLL-ROZADA REVDAT 3 17-JAN-24 6H40 1 LINK REVDAT 2 23-JAN-19 6H40 1 JRNL REVDAT 1 16-JAN-19 6H40 0 JRNL AUTH J.RIPOLL-ROZADA,M.COSTA,J.A.MANSO,A.MARANHA,V.MIRANDA, JRNL AUTH 2 A.SEQUEIRA,M.R.VENTURA,S.MACEDO-RIBEIRO,P.J.B.PEREIRA, JRNL AUTH 3 N.EMPADINHAS JRNL TITL BIOSYNTHESIS OF MYCOBACTERIAL METHYLMANNOSE POLYSACCHARIDES JRNL TITL 2 REQUIRES A UNIQUE 1-O-METHYLTRANSFERASE SPECIFIC FOR JRNL TITL 3 3-O-METHYLATED MANNOSIDES. JRNL REF PROC. NATL. ACAD. SCI. V. 116 835 2019 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30606802 JRNL DOI 10.1073/PNAS.1813450116 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 138501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.109 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.120 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0415 - 3.2726 0.98 4510 242 0.1257 0.1349 REMARK 3 2 3.2726 - 2.5976 1.00 4451 246 0.1208 0.1426 REMARK 3 3 2.5976 - 2.2692 0.99 4354 279 0.1050 0.1074 REMARK 3 4 2.2692 - 2.0617 0.99 4401 205 0.0930 0.1133 REMARK 3 5 2.0617 - 1.9140 1.00 4410 265 0.0957 0.1022 REMARK 3 6 1.9140 - 1.8011 1.00 4377 258 0.0939 0.0999 REMARK 3 7 1.8011 - 1.7109 1.00 4401 227 0.0891 0.0961 REMARK 3 8 1.7109 - 1.6364 1.00 4417 236 0.0863 0.1011 REMARK 3 9 1.6364 - 1.5734 1.00 4334 265 0.0800 0.0908 REMARK 3 10 1.5734 - 1.5191 1.00 4403 220 0.0752 0.0927 REMARK 3 11 1.5191 - 1.4716 1.00 4388 229 0.0744 0.0887 REMARK 3 12 1.4716 - 1.4296 1.00 4424 209 0.0792 0.0999 REMARK 3 13 1.4296 - 1.3919 1.00 4414 222 0.0872 0.1091 REMARK 3 14 1.3919 - 1.3580 1.00 4399 229 0.0902 0.1038 REMARK 3 15 1.3580 - 1.3271 1.00 4383 205 0.0928 0.0980 REMARK 3 16 1.3271 - 1.2988 1.00 4386 243 0.0899 0.1014 REMARK 3 17 1.2988 - 1.2729 1.00 4361 261 0.0919 0.1108 REMARK 3 18 1.2729 - 1.2488 1.00 4363 228 0.0960 0.1126 REMARK 3 19 1.2488 - 1.2265 1.00 4402 237 0.1041 0.1080 REMARK 3 20 1.2265 - 1.2057 1.00 4364 202 0.1043 0.1363 REMARK 3 21 1.2057 - 1.1863 1.00 4409 229 0.1084 0.1220 REMARK 3 22 1.1863 - 1.1680 1.00 4345 224 0.1248 0.1402 REMARK 3 23 1.1680 - 1.1509 1.00 4404 238 0.1319 0.1375 REMARK 3 24 1.1509 - 1.1346 1.00 4331 238 0.1397 0.1594 REMARK 3 25 1.1346 - 1.1193 1.00 4370 223 0.1497 0.1663 REMARK 3 26 1.1193 - 1.1048 1.00 4402 208 0.1561 0.1803 REMARK 3 27 1.1048 - 1.0910 1.00 4363 245 0.1671 0.1837 REMARK 3 28 1.0910 - 1.0778 0.99 4349 192 0.1883 0.1712 REMARK 3 29 1.0778 - 1.0653 1.00 4331 252 0.2133 0.2236 REMARK 3 30 1.0653 - 1.0533 0.98 4266 232 0.2518 0.2374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1871 REMARK 3 ANGLE : 1.109 2550 REMARK 3 CHIRALITY : 0.091 276 REMARK 3 PLANARITY : 0.007 333 REMARK 3 DIHEDRAL : 21.684 670 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979295 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.053 REMARK 200 RESOLUTION RANGE LOW (A) : 97.977 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6G7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 20% (WT/VOL) PEG 8000., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.40467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.70233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.70233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.40467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.80933 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 LEU A 224 REMARK 465 GLU A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 894 O HOH A 918 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 -123.70 56.19 REMARK 500 ASP A 141 42.00 -147.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 979 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 7.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD2 REMARK 620 2 GOL A 609 O1 160.2 REMARK 620 3 GOL A 609 O2 153.0 43.6 REMARK 620 4 HOH A 702 O 92.1 68.2 109.6 REMARK 620 5 HOH A 707 O 88.8 111.0 70.9 175.6 REMARK 620 6 HOH A 719 O 88.1 88.9 77.0 88.1 96.3 REMARK 620 7 HOH A 803 O 97.9 84.6 98.4 89.1 86.4 173.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD1 REMARK 620 2 ASP A 170 OD2 93.6 REMARK 620 3 GOL A 603 O3 94.4 87.4 REMARK 620 4 FW5 A 604 O 107.0 85.8 12.6 REMARK 620 5 HOH A 711 O 177.0 88.2 83.4 70.8 REMARK 620 6 HOH A 715 O 90.4 176.0 92.7 93.4 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FW5 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G7D RELATED DB: PDB REMARK 900 RELATED ID: 6G80 RELATED DB: PDB REMARK 900 RELATED ID: SASDDJ6 RELATED DB: SASBDB DBREF 6H40 A 1 218 UNP K5B7F3 K5B7F3_MYCHD 1 218 SEQADV 6H40 LYS A 219 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 LEU A 220 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 ALA A 221 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 ALA A 222 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 ALA A 223 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 LEU A 224 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 GLU A 225 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 HIS A 226 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 HIS A 227 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 HIS A 228 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 HIS A 229 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 HIS A 230 UNP K5B7F3 EXPRESSION TAG SEQADV 6H40 HIS A 231 UNP K5B7F3 EXPRESSION TAG SEQRES 1 A 231 MET THR ASP ILE ARG ASP THR ASP ALA LEU PHE ALA LEU SEQRES 2 A 231 ALA ASP ARG VAL THR GLY PHE MET PRO ALA ASP GLU GLY SEQRES 3 A 231 ARG THR LEU TYR GLU THR ALA VAL ARG TYR LEU GLY ASP SEQRES 4 A 231 GLY VAL GLY VAL GLU ILE GLY THR TYR CYS GLY LYS SER SEQRES 5 A 231 THR VAL LEU LEU GLY ALA ALA ALA ARG GLN THR GLY GLY SEQRES 6 A 231 VAL VAL PHE THR VAL ASP HIS HIS HIS GLY SER GLU GLU SEQRES 7 A 231 HIS GLN PRO GLY TRP GLU TYR HIS ASP PRO SER LEU VAL SEQRES 8 A 231 ASP PRO VAL THR GLY LEU PHE ASP THR LEU PRO ARG LEU SEQRES 9 A 231 ARG HIS THR LEU ASP GLU ALA ASP LEU TYR ASP HIS VAL SEQRES 10 A 231 VAL ALA VAL VAL GLY LYS SER ALA VAL VAL ALA ARG GLY SEQRES 11 A 231 TRP ARG THR PRO LEU ARG PHE LEU PHE ILE ASP GLY GLY SEQRES 12 A 231 HIS THR GLU GLU ALA ALA GLN ARG ASP PHE ASP GLY TRP SEQRES 13 A 231 ALA ARG TRP VAL GLU VAL GLY GLY ALA LEU VAL ILE HIS SEQRES 14 A 231 ASP VAL PHE PRO ASP PRO LYS ASP GLY GLY GLN ALA PRO SEQRES 15 A 231 PHE HIS ILE TYR GLN ARG ALA LEU ASN THR GLY ASP PHE SEQRES 16 A 231 ARG GLU VAL ASN ALA TYR GLY SER MET ARG VAL LEU GLU SEQRES 17 A 231 ARG THR SER GLY ILE ALA GLY GLN PRO LEU LYS LEU ALA SEQRES 18 A 231 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET FW5 A 604 7 HET SAH A 605 45 HET MG A 606 1 HET MG A 607 1 HET CL A 608 1 HET GOL A 609 12 HETNAM GOL GLYCEROL HETNAM FW5 (2~{S})-3-METHOXYPROPANE-1,2-DIOL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 5 FW5 C4 H10 O3 FORMUL 6 SAH C14 H20 N6 O5 S FORMUL 7 MG 2(MG 2+) FORMUL 9 CL CL 1- FORMUL 11 HOH *280(H2 O) HELIX 1 AA1 ARG A 5 VAL A 17 1 13 HELIX 2 AA2 PRO A 22 LEU A 37 1 16 HELIX 3 AA3 GLY A 50 GLY A 64 1 15 HELIX 4 AA4 SER A 76 GLN A 80 5 5 HELIX 5 AA5 ASP A 87 VAL A 91 5 5 HELIX 6 AA6 THR A 100 ASP A 112 1 13 HELIX 7 AA7 LYS A 123 GLY A 130 1 8 HELIX 8 AA8 THR A 145 ALA A 157 1 13 HELIX 9 AA9 GLN A 180 THR A 192 1 13 SHEET 1 AA1 7 VAL A 117 VAL A 121 0 SHEET 2 AA1 7 VAL A 66 ASP A 71 1 N THR A 69 O VAL A 120 SHEET 3 AA1 7 VAL A 41 ILE A 45 1 N GLU A 44 O VAL A 70 SHEET 4 AA1 7 LEU A 135 ILE A 140 1 O PHE A 139 N ILE A 45 SHEET 5 AA1 7 VAL A 160 ILE A 168 1 O VAL A 167 N LEU A 138 SHEET 6 AA1 7 MET A 204 ARG A 209 -1 O LEU A 207 N LEU A 166 SHEET 7 AA1 7 PHE A 195 TYR A 201 -1 N VAL A 198 O VAL A 206 LINK OD2 ASP A 112 MG MG A 607 1555 1555 2.09 LINK OD1 ASP A 141 MG MG A 606 1555 1555 2.05 LINK OD2 ASP A 170 MG MG A 606 1555 1555 2.07 LINK O3 AGOL A 603 MG MG A 606 1555 1555 2.09 LINK O BFW5 A 604 MG MG A 606 1555 1555 2.23 LINK MG MG A 606 O HOH A 711 1555 1555 2.14 LINK MG MG A 606 O HOH A 715 1555 1555 2.04 LINK MG MG A 607 O1 BGOL A 609 1555 1555 2.15 LINK MG MG A 607 O2 AGOL A 609 1555 1555 2.22 LINK MG MG A 607 O HOH A 702 1555 1555 2.00 LINK MG MG A 607 O HOH A 707 1555 1555 1.98 LINK MG MG A 607 O HOH A 719 1555 1555 2.09 LINK MG MG A 607 O HOH A 803 1555 1555 2.02 SITE 1 AC1 11 ILE A 4 ARG A 5 ASP A 6 THR A 7 SITE 2 AC1 11 ARG A 61 GLN A 62 LYS A 123 HOH A 720 SITE 3 AC1 11 HOH A 767 HOH A 772 HOH A 825 SITE 1 AC2 8 HIS A 144 ASP A 170 GLY A 178 GLY A 179 SITE 2 AC2 8 GOL A 603 FW5 A 604 HOH A 716 HOH A 778 SITE 1 AC3 11 GLU A 78 HIS A 79 ASP A 141 HIS A 144 SITE 2 AC3 11 ASP A 170 GOL A 602 FW5 A 604 MG A 606 SITE 3 AC3 11 HOH A 705 HOH A 711 HOH A 715 SITE 1 AC4 11 GLU A 78 HIS A 79 ASP A 141 HIS A 144 SITE 2 AC4 11 ASP A 170 GOL A 602 GOL A 603 MG A 606 SITE 3 AC4 11 HOH A 705 HOH A 711 HOH A 715 SITE 1 AC5 22 GLY A 19 PHE A 20 GLU A 44 GLY A 46 SITE 2 AC5 22 THR A 47 TYR A 48 SER A 52 ASP A 71 SITE 3 AC5 22 HIS A 72 GLY A 75 SER A 76 GLY A 122 SITE 4 AC5 22 LYS A 123 SER A 124 ASP A 141 GLY A 142 SITE 5 AC5 22 GLY A 143 ARG A 151 CL A 608 HOH A 766 SITE 6 AC5 22 HOH A 768 HOH A 817 SITE 1 AC6 7 ASP A 141 HIS A 169 ASP A 170 GOL A 603 SITE 2 AC6 7 FW5 A 604 HOH A 711 HOH A 715 SITE 1 AC7 6 ASP A 112 GOL A 609 HOH A 702 HOH A 707 SITE 2 AC7 6 HOH A 719 HOH A 803 SITE 1 AC8 5 SER A 124 ALA A 125 ARG A 151 SAH A 605 SITE 2 AC8 5 HOH A 772 SITE 1 AC9 12 ASP A 3 ASP A 6 ALA A 9 ALA A 111 SITE 2 AC9 12 ASP A 112 MG A 607 HOH A 702 HOH A 707 SITE 3 AC9 12 HOH A 719 HOH A 803 HOH A 814 HOH A 951 CRYST1 113.134 113.134 41.107 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008839 0.005103 0.000000 0.00000 SCALE2 0.000000 0.010206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024327 0.00000