HEADER IMMUNE SYSTEM 21-JUL-18 6H4K TITLE STRUCTURE OF THE USP25 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 25,USP ON CHROMOSOME 21,UBIQUITIN COMPND 5 THIOESTERASE 25,UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 25; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP25, USP21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS USP, UBIQUITIN, DEUBIQUITINASE, CANCER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.A.KLEMM,F.SAUER,C.KISKER REVDAT 3 15-MAY-19 6H4K 1 JRNL REVDAT 2 10-APR-19 6H4K 1 JRNL REVDAT 1 27-MAR-19 6H4K 0 JRNL AUTH F.SAUER,T.KLEMM,R.B.KOLLAMPALLY,I.TESSMER,R.K.NAIR,N.POPOV, JRNL AUTH 2 C.KISKER JRNL TITL DIFFERENTIAL OLIGOMERIZATION OF THE DEUBIQUITINASES USP25 JRNL TITL 2 AND USP28 REGULATES THEIR ACTIVITIES. JRNL REF MOL.CELL V. 74 421 2019 JRNL REFN ISSN 1097-2765 JRNL PMID 30926243 JRNL DOI 10.1016/J.MOLCEL.2019.02.029 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 2171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5136 - 5.1631 1.00 2353 147 0.1956 0.1904 REMARK 3 2 5.1631 - 4.0991 1.00 2383 111 0.1477 0.1446 REMARK 3 3 4.0991 - 3.5812 1.00 2386 123 0.1608 0.2334 REMARK 3 4 3.5812 - 3.2539 1.00 2326 168 0.1838 0.2410 REMARK 3 5 3.2539 - 3.0208 1.00 2392 108 0.2220 0.2527 REMARK 3 6 3.0208 - 2.8427 1.00 2340 147 0.2121 0.2604 REMARK 3 7 2.8427 - 2.7004 1.00 2385 124 0.2023 0.2220 REMARK 3 8 2.7004 - 2.5828 1.00 2425 74 0.1972 0.2519 REMARK 3 9 2.5828 - 2.4834 1.00 2305 174 0.1971 0.2486 REMARK 3 10 2.4834 - 2.3977 1.00 2366 135 0.2069 0.2583 REMARK 3 11 2.3977 - 2.3227 1.00 2364 132 0.2147 0.2156 REMARK 3 12 2.3227 - 2.2564 1.00 2390 128 0.2262 0.2375 REMARK 3 13 2.2564 - 2.1970 1.00 2265 191 0.2377 0.2677 REMARK 3 14 2.1970 - 2.1434 1.00 2386 138 0.2572 0.2975 REMARK 3 15 2.1434 - 2.0946 1.00 2368 127 0.2969 0.3522 REMARK 3 16 2.0946 - 2.0501 1.00 2325 144 0.3390 0.3893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2241 REMARK 3 ANGLE : 0.855 3028 REMARK 3 CHIRALITY : 0.043 334 REMARK 3 PLANARITY : 0.005 392 REMARK 3 DIHEDRAL : 15.778 844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 777 THROUGH 793 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0790 2.4841 31.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.4543 T22: 0.6611 REMARK 3 T33: 0.5671 T12: 0.0305 REMARK 3 T13: -0.0152 T23: -0.1818 REMARK 3 L TENSOR REMARK 3 L11: 2.7179 L22: 8.1131 REMARK 3 L33: 6.8502 L12: 4.3349 REMARK 3 L13: -2.2979 L23: -1.5769 REMARK 3 S TENSOR REMARK 3 S11: 0.4801 S12: -0.1278 S13: -0.9207 REMARK 3 S21: 0.5741 S22: 0.0979 S23: -0.8950 REMARK 3 S31: -0.5618 S32: 0.5800 S33: -0.5494 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 794 THROUGH 817 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7870 3.0063 30.7274 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.4160 REMARK 3 T33: 0.3515 T12: -0.0181 REMARK 3 T13: -0.0156 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 5.3360 L22: 3.5168 REMARK 3 L33: 4.8294 L12: 0.5650 REMARK 3 L13: -2.2857 L23: -1.5408 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: -0.1841 S13: -0.3024 REMARK 3 S21: -0.0280 S22: -0.0561 S23: -0.3277 REMARK 3 S31: 0.1969 S32: 0.7065 S33: -0.0642 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 818 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1748 15.4867 31.8597 REMARK 3 T TENSOR REMARK 3 T11: 0.4158 T22: 0.6654 REMARK 3 T33: 0.6281 T12: -0.0255 REMARK 3 T13: 0.1161 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 5.0854 L22: 2.3499 REMARK 3 L33: 8.6643 L12: 3.4555 REMARK 3 L13: 6.6657 L23: 4.5330 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: 0.3500 S13: 0.2429 REMARK 3 S21: 0.1342 S22: -0.2442 S23: 0.1128 REMARK 3 S31: -0.1220 S32: 0.0277 S33: -0.1610 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 838 THROUGH 860 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.6560 16.4940 30.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.4642 T22: 0.8473 REMARK 3 T33: 0.9239 T12: -0.1009 REMARK 3 T13: 0.1049 T23: -0.1238 REMARK 3 L TENSOR REMARK 3 L11: 7.7749 L22: 4.3263 REMARK 3 L33: 4.3079 L12: -0.7348 REMARK 3 L13: 5.5709 L23: -1.2653 REMARK 3 S TENSOR REMARK 3 S11: -0.5654 S12: 0.8185 S13: 0.4021 REMARK 3 S21: -0.2143 S22: 0.5052 S23: -0.5894 REMARK 3 S31: -0.4793 S32: 0.1471 S33: -0.1003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 861 THROUGH 889 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5532 13.1933 29.4056 REMARK 3 T TENSOR REMARK 3 T11: 0.3468 T22: 0.3527 REMARK 3 T33: 0.4355 T12: -0.0401 REMARK 3 T13: 0.0535 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 4.1087 L22: 3.2839 REMARK 3 L33: 6.4052 L12: 0.6819 REMARK 3 L13: -1.3815 L23: -0.4148 REMARK 3 S TENSOR REMARK 3 S11: 0.2022 S12: -0.2930 S13: 0.5522 REMARK 3 S21: -0.0211 S22: -0.1901 S23: -0.2016 REMARK 3 S31: -0.5447 S32: 0.6054 S33: -0.2134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 890 THROUGH 920 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9720 8.8095 28.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.3108 REMARK 3 T33: 0.3240 T12: -0.0202 REMARK 3 T13: 0.0733 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 5.4646 L22: 2.3182 REMARK 3 L33: 3.0602 L12: -0.2280 REMARK 3 L13: -0.9520 L23: 0.7062 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.0401 S13: 0.1172 REMARK 3 S21: 0.0627 S22: -0.0809 S23: 0.0354 REMARK 3 S31: -0.0686 S32: -0.1486 S33: -0.0259 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 921 THROUGH 945 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6448 5.5297 32.8754 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.4692 REMARK 3 T33: 0.4525 T12: -0.1156 REMARK 3 T13: 0.0760 T23: -0.1286 REMARK 3 L TENSOR REMARK 3 L11: 3.0043 L22: 3.2733 REMARK 3 L33: 2.5694 L12: -3.0600 REMARK 3 L13: -1.5802 L23: 1.6020 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.1134 S13: -0.9515 REMARK 3 S21: 0.2921 S22: -0.4411 S23: 0.5498 REMARK 3 S31: 0.3116 S32: -0.4470 S33: 0.5276 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 946 THROUGH 961 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4360 17.6619 35.2155 REMARK 3 T TENSOR REMARK 3 T11: 0.4799 T22: 0.7299 REMARK 3 T33: 0.7882 T12: -0.0337 REMARK 3 T13: -0.0122 T23: -0.2465 REMARK 3 L TENSOR REMARK 3 L11: 6.4092 L22: 5.8513 REMARK 3 L33: 8.7892 L12: -3.1719 REMARK 3 L13: -2.6379 L23: 2.1329 REMARK 3 S TENSOR REMARK 3 S11: 0.0985 S12: -0.5112 S13: -0.2726 REMARK 3 S21: 0.3251 S22: -0.6323 S23: 0.7057 REMARK 3 S31: -0.3241 S32: -0.6881 S33: 0.2646 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 962 THROUGH 975 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5856 7.5957 20.1049 REMARK 3 T TENSOR REMARK 3 T11: 0.5576 T22: 0.8304 REMARK 3 T33: 0.6127 T12: 0.0657 REMARK 3 T13: 0.0405 T23: -0.2247 REMARK 3 L TENSOR REMARK 3 L11: 4.9645 L22: 2.2436 REMARK 3 L33: 2.3863 L12: 0.3210 REMARK 3 L13: -1.1291 L23: -0.7276 REMARK 3 S TENSOR REMARK 3 S11: -0.1487 S12: 1.8752 S13: -0.5188 REMARK 3 S21: -0.1936 S22: -0.2631 S23: -0.2843 REMARK 3 S31: 1.2449 S32: -0.0220 S33: 0.4335 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 976 THROUGH 1012 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1260 8.6779 26.5697 REMARK 3 T TENSOR REMARK 3 T11: 0.3988 T22: 0.8116 REMARK 3 T33: 0.5391 T12: -0.1678 REMARK 3 T13: 0.0009 T23: -0.2080 REMARK 3 L TENSOR REMARK 3 L11: 7.6703 L22: 5.7230 REMARK 3 L33: 3.6081 L12: -1.7585 REMARK 3 L13: 1.4098 L23: -1.2560 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.2450 S13: -0.1839 REMARK 3 S21: 0.2236 S22: -0.0388 S23: 0.8108 REMARK 3 S31: 0.2972 S32: -0.9824 S33: 0.1073 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1013 THROUGH 1032 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2257 17.8625 25.3763 REMARK 3 T TENSOR REMARK 3 T11: 0.5122 T22: 0.4762 REMARK 3 T33: 0.7647 T12: 0.0310 REMARK 3 T13: 0.0309 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.0599 L22: 1.1544 REMARK 3 L33: 0.7860 L12: -0.8333 REMARK 3 L13: -1.6368 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.5329 S13: 0.5037 REMARK 3 S21: -0.1516 S22: 0.0041 S23: -0.2640 REMARK 3 S31: -0.1026 S32: -0.4164 S33: -0.0671 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1033 THROUGH 1049 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0003 5.2890 41.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.4375 T22: 0.5517 REMARK 3 T33: 0.4748 T12: 0.0454 REMARK 3 T13: -0.0130 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.5488 L22: 2.7729 REMARK 3 L33: 8.0491 L12: 2.3374 REMARK 3 L13: -4.9373 L23: -4.2082 REMARK 3 S TENSOR REMARK 3 S11: -0.2007 S12: -0.0007 S13: -0.4283 REMARK 3 S21: 0.3689 S22: 0.6383 S23: -0.4226 REMARK 3 S31: 0.2045 S32: -0.1216 S33: -0.2983 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 43.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 49.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 41.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5 22% W/V PEG4000 0.2M REMARK 280 SRCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.39500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.50400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.50400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.09250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.50400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.50400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.69750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.50400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.50400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.09250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.50400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.50400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.69750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1215 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 763 REMARK 465 PRO A 764 REMARK 465 SER A 765 REMARK 465 HIS A 766 REMARK 465 GLU A 767 REMARK 465 HIS A 768 REMARK 465 GLU A 769 REMARK 465 ASP A 770 REMARK 465 LYS A 771 REMARK 465 SER A 772 REMARK 465 PRO A 773 REMARK 465 GLU A 774 REMARK 465 THR A 775 REMARK 465 VAL A 776 REMARK 465 ILE A 854 REMARK 465 LYS A 855 REMARK 465 PRO A 856 REMARK 465 THR A 1050 REMARK 465 PRO A 1051 REMARK 465 ALA A 1052 REMARK 465 ASP A 1053 REMARK 465 GLY A 1054 REMARK 465 ARG A 1055 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 778 CG CD OE1 NE2 REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 ASP A 795 CG OD1 OD2 REMARK 470 LYS A 819 CG CD CE NZ REMARK 470 GLU A 852 CG CD OE1 OE2 REMARK 470 GLU A 857 CG CD OE1 OE2 REMARK 470 GLU A 858 CG CD OE1 OE2 REMARK 470 VAL A 859 CG1 CG2 REMARK 470 GLU A 973 CG CD OE1 OE2 REMARK 470 GLN A 995 CG CD OE1 NE2 REMARK 470 GLU A 996 CG CD OE1 OE2 REMARK 470 GLU A1003 CG CD OE1 OE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 LYS A1020 CG CD CE NZ REMARK 470 LYS A1027 CG CD CE NZ REMARK 470 ARG A1049 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 875 O HOH A 1201 1.90 REMARK 500 OE1 GLN A 938 O HOH A 1202 1.94 REMARK 500 CL CL A 1101 O HOH A 1255 2.06 REMARK 500 NE ARG A 875 O HOH A 1201 2.13 REMARK 500 OE2 GLU A 886 O HOH A 1203 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 860 77.30 40.40 REMARK 500 ASP A 920 109.38 -50.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6H4H RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF THE SAME PROTEIN DBREF 6H4K A 765 1055 UNP Q9UHP3 UBP25_HUMAN 765 1055 SEQADV 6H4K GLY A 763 UNP Q9UHP3 EXPRESSION TAG SEQADV 6H4K PRO A 764 UNP Q9UHP3 EXPRESSION TAG SEQRES 1 A 293 GLY PRO SER HIS GLU HIS GLU ASP LYS SER PRO GLU THR SEQRES 2 A 293 VAL LEU GLN SER ALA ILE LYS LEU GLU TYR ALA ARG LEU SEQRES 3 A 293 VAL LYS LEU ALA GLN GLU ASP THR PRO PRO GLU THR ASP SEQRES 4 A 293 TYR ARG LEU HIS HIS VAL VAL VAL TYR PHE ILE GLN ASN SEQRES 5 A 293 GLN ALA PRO LYS LYS ILE ILE GLU LYS THR LEU LEU GLU SEQRES 6 A 293 GLN PHE GLY ASP ARG ASN LEU SER PHE ASP GLU ARG CYS SEQRES 7 A 293 HIS ASN ILE MSE LYS VAL ALA GLN ALA LYS LEU GLU MSE SEQRES 8 A 293 ILE LYS PRO GLU GLU VAL ASN LEU GLU GLU TYR GLU GLU SEQRES 9 A 293 TRP HIS GLN ASP TYR ARG LYS PHE ARG GLU THR THR MSE SEQRES 10 A 293 TYR LEU ILE ILE GLY LEU GLU ASN PHE GLN ARG GLU SER SEQRES 11 A 293 TYR ILE ASP SER LEU LEU PHE LEU ILE CYS ALA TYR GLN SEQRES 12 A 293 ASN ASN LYS GLU LEU LEU SER LYS GLY LEU TYR ARG GLY SEQRES 13 A 293 HIS ASP GLU GLU LEU ILE SER HIS TYR ARG ARG GLU CYS SEQRES 14 A 293 LEU LEU LYS LEU ASN GLU GLN ALA ALA GLU LEU PHE GLU SEQRES 15 A 293 SER GLY GLU ASP ARG GLU VAL ASN ASN GLY LEU ILE ILE SEQRES 16 A 293 MSE ASN GLU PHE ILE VAL PRO PHE LEU PRO LEU LEU LEU SEQRES 17 A 293 VAL ASP GLU MSE GLU GLU LYS ASP ILE LEU ALA VAL GLU SEQRES 18 A 293 ASP MSE ARG ASN ARG TRP CYS SER TYR LEU GLY GLN GLU SEQRES 19 A 293 MSE GLU PRO HIS LEU GLN GLU LYS LEU THR ASP PHE LEU SEQRES 20 A 293 PRO LYS LEU LEU ASP CYS SER MSE GLU ILE LYS SER PHE SEQRES 21 A 293 HIS GLU PRO PRO LYS LEU PRO SER TYR SER THR HIS GLU SEQRES 22 A 293 LEU CYS GLU ARG PHE ALA ARG ILE MSE LEU SER LEU SER SEQRES 23 A 293 ARG THR PRO ALA ASP GLY ARG MODRES 6H4K MSE A 844 MET MODIFIED RESIDUE MODRES 6H4K MSE A 853 MET MODIFIED RESIDUE MODRES 6H4K MSE A 879 MET MODIFIED RESIDUE MODRES 6H4K MSE A 958 MET MODIFIED RESIDUE MODRES 6H4K MSE A 974 MET MODIFIED RESIDUE MODRES 6H4K MSE A 985 MET MODIFIED RESIDUE MODRES 6H4K MSE A 997 MET MODIFIED RESIDUE MODRES 6H4K MSE A 1017 MET MODIFIED RESIDUE MODRES 6H4K MSE A 1044 MET MODIFIED RESIDUE HET MSE A 844 8 HET MSE A 853 8 HET MSE A 879 8 HET MSE A 958 8 HET MSE A 974 8 HET MSE A 985 8 HET MSE A 997 8 HET MSE A1017 8 HET MSE A1044 8 HET CL A1101 1 HET CL A1102 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *57(H2 O) HELIX 1 AA1 SER A 779 GLU A 794 1 16 HELIX 2 AA2 ASP A 801 HIS A 805 5 5 HELIX 3 AA3 HIS A 806 ASN A 814 1 9 HELIX 4 AA4 PRO A 817 ASP A 831 1 15 HELIX 5 AA5 ASP A 837 MSE A 853 1 17 HELIX 6 AA6 ASN A 860 ARG A 890 1 31 HELIX 7 AA7 SER A 892 SER A 912 1 21 HELIX 8 AA8 ASP A 920 GLY A 946 1 27 HELIX 9 AA9 GLU A 947 ILE A 962 1 16 HELIX 10 AB1 PHE A 965 VAL A 971 1 7 HELIX 11 AB2 GLU A 975 SER A 991 1 17 HELIX 12 AB3 TYR A 992 GLN A 995 5 4 HELIX 13 AB4 GLU A 998 ASP A 1014 1 17 HELIX 14 AB5 SER A 1032 LEU A 1047 1 16 LINK C ILE A 843 N MSE A 844 1555 1555 1.33 LINK C MSE A 844 N LYS A 845 1555 1555 1.34 LINK C GLU A 852 N MSE A 853 1555 1555 1.33 LINK C THR A 878 N MSE A 879 1555 1555 1.32 LINK C MSE A 879 N TYR A 880 1555 1555 1.34 LINK C ILE A 957 N MSE A 958 1555 1555 1.34 LINK C MSE A 958 N ASN A 959 1555 1555 1.33 LINK C GLU A 973 N MSE A 974 1555 1555 1.33 LINK C MSE A 974 N GLU A 975 1555 1555 1.34 LINK C ASP A 984 N MSE A 985 1555 1555 1.33 LINK C MSE A 985 N ARG A 986 1555 1555 1.34 LINK C GLU A 996 N MSE A 997 1555 1555 1.33 LINK C MSE A 997 N GLU A 998 1555 1555 1.33 LINK C SER A1016 N MSE A1017 1555 1555 1.33 LINK C MSE A1017 N GLU A1018 1555 1555 1.33 LINK C ILE A1043 N MSE A1044 1555 1555 1.33 LINK C MSE A1044 N LEU A1045 1555 1555 1.34 SITE 1 AC1 3 THR A 796 CL A1102 HOH A1255 SITE 1 AC2 5 THR A 796 PRO A 797 THR A 800 CL A1101 SITE 2 AC2 5 HOH A1255 CRYST1 87.008 87.008 86.790 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011522 0.00000