HEADER CYTOSOLIC PROTEIN 24-JUL-18 6H5B TITLE MYXOCOCCUS XANTHUS MGLA IN COMPLEX WITH ITS GAP MGLB AND GTPGAMMAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTUAL GLIDING-MOTILITY PROTEIN MGLA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GTPGS; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MGLB; COMPND 8 CHAIN: B, C; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: PEG FROM CONDITION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS DK 1622; SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 GENE: MGLA, MXAN_1925; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 9 ORGANISM_TAXID: 34; SOURCE 10 GENE: MGLB; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE AND GAP COMPLEX, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.GALICIA,J.CHERFILS REVDAT 3 11-NOV-20 6H5B 1 TITLE REMARK REVDAT 2 04-DEC-19 6H5B 1 JRNL REVDAT 1 27-NOV-19 6H5B 0 JRNL AUTH C.GALICIA,S.LHOSPICE,P.F.VARELA,S.TRAPANI,W.ZHANG,J.NAVAZA, JRNL AUTH 2 J.HERROU,T.MIGNOT,J.CHERFILS JRNL TITL MGLA FUNCTIONS AS A THREE-STATE GTPASE TO CONTROL MOVEMENT JRNL TITL 2 REVERSALS OF MYXOCOCCUS XANTHUS. JRNL REF NAT COMMUN V. 10 5300 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31757955 JRNL DOI 10.1038/S41467-019-13274-3 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.6 REMARK 3 NUMBER OF REFLECTIONS : 10924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0200 - 5.6000 0.98 1794 211 0.1887 0.2249 REMARK 3 2 5.6000 - 4.4400 1.00 1780 191 0.1745 0.2371 REMARK 3 3 4.4400 - 3.8800 1.00 1767 198 0.1804 0.2509 REMARK 3 4 3.8800 - 3.5300 0.99 1736 191 0.2151 0.2726 REMARK 3 5 3.5300 - 3.2700 0.68 1190 136 0.2453 0.3204 REMARK 3 6 3.2700 - 3.0800 0.42 725 83 0.2935 0.4095 REMARK 3 7 3.0800 - 2.9300 0.27 480 53 0.3252 0.3556 REMARK 3 8 2.9300 - 2.8000 0.20 350 39 0.3555 0.4531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.389 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.726 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3581 REMARK 3 ANGLE : 0.730 4818 REMARK 3 CHIRALITY : 0.046 561 REMARK 3 PLANARITY : 0.004 598 REMARK 3 DIHEDRAL : 17.709 2171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -52.3295 -17.8160 7.0647 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: -0.4205 REMARK 3 T33: 0.2451 T12: 0.0507 REMARK 3 T13: -0.0215 T23: 0.3643 REMARK 3 L TENSOR REMARK 3 L11: 1.5103 L22: 1.8333 REMARK 3 L33: 2.5871 L12: -0.4015 REMARK 3 L13: -0.5978 L23: 0.8816 REMARK 3 S TENSOR REMARK 3 S11: 0.1735 S12: 0.4212 S13: -0.2173 REMARK 3 S21: 0.0147 S22: 0.2868 S23: -0.8495 REMARK 3 S31: -0.5715 S32: 1.0506 S33: 2.8170 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'B' AND (RESID 12 THROUGH 20 OR REMARK 3 (RESID 21 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 22 REMARK 3 THROUGH 23 OR (RESID 24 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 25 THROUGH 38 OR RESID 40 REMARK 3 THROUGH 45 OR RESID 47 THROUGH 70 OR REMARK 3 RESID 72 THROUGH 75 OR RESID 77 THROUGH REMARK 3 86 OR (RESID 87 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 88 THROUGH 97 OR RESID 99 THROUGH 106 OR REMARK 3 RESID 109 THROUGH 116 OR (RESID 117 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 118 OR (RESID 119 REMARK 3 THROUGH 121 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 122 THROUGH 123 OR (RESID 124 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 125 THROUGH 126 OR (RESID 127 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 128 THROUGH 129 REMARK 3 OR (RESID 130 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 12 THROUGH 20 OR REMARK 3 (RESID 21 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 22 REMARK 3 THROUGH 23 OR (RESID 24 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 25 THROUGH 38 OR RESID 40 REMARK 3 THROUGH 45 OR RESID 47 THROUGH 70 OR REMARK 3 RESID 72 THROUGH 75 OR RESID 77 THROUGH REMARK 3 86 OR (RESID 87 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 88 THROUGH 97 OR RESID 99 THROUGH 106 OR REMARK 3 RESID 109 THROUGH 116 OR (RESID 117 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 118 OR (RESID 119 REMARK 3 THROUGH 121 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 122 THROUGH 123 OR (RESID 124 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 125 THROUGH 126 OR (RESID 127 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 128 THROUGH 129 REMARK 3 OR (RESID 130 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979336 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M HEPES, 16% PEG 4000, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.12733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.25467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.12733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.25467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 192 REMARK 465 LYS A 193 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 LYS B 135 REMARK 465 THR B 136 REMARK 465 ASP B 137 REMARK 465 SER B 138 REMARK 465 PRO B 139 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 PRO B 144 REMARK 465 PHE B 145 REMARK 465 ALA B 146 REMARK 465 GLU B 147 REMARK 465 ILE B 148 REMARK 465 SER B 149 REMARK 465 ASP B 150 REMARK 465 ASP B 151 REMARK 465 ASP B 152 REMARK 465 ILE B 153 REMARK 465 ASP B 154 REMARK 465 ASN B 155 REMARK 465 LEU B 156 REMARK 465 PHE B 157 REMARK 465 SER B 158 REMARK 465 GLU B 159 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 THR C 3 REMARK 465 GLN C 4 REMARK 465 LEU C 5 REMARK 465 VAL C 6 REMARK 465 MET C 7 REMARK 465 TYR C 8 REMARK 465 LEU C 132 REMARK 465 VAL C 133 REMARK 465 LYS C 134 REMARK 465 LYS C 135 REMARK 465 THR C 136 REMARK 465 ASP C 137 REMARK 465 SER C 138 REMARK 465 PRO C 139 REMARK 465 GLY C 140 REMARK 465 ALA C 141 REMARK 465 GLY C 142 REMARK 465 SER C 143 REMARK 465 PRO C 144 REMARK 465 PHE C 145 REMARK 465 ALA C 146 REMARK 465 GLU C 147 REMARK 465 ILE C 148 REMARK 465 SER C 149 REMARK 465 ASP C 150 REMARK 465 ASP C 151 REMARK 465 ASP C 152 REMARK 465 ILE C 153 REMARK 465 ASP C 154 REMARK 465 ASN C 155 REMARK 465 LEU C 156 REMARK 465 PHE C 157 REMARK 465 SER C 158 REMARK 465 GLU C 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 66 OE1 OE2 REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 9 CD NE CZ NH1 NH2 REMARK 480 GLU A 39 CB CG CD OE1 OE2 REMARK 480 LYS A 43 CG CD CE NZ REMARK 480 GLU A 50 CG CD OE1 OE2 REMARK 480 ARG A 68 CD NE CZ NH1 NH2 REMARK 480 LYS A 71 CG CD CE NZ REMARK 480 ARG A 73 CZ NH1 NH2 REMARK 480 ASP A 97 OD1 OD2 REMARK 480 GLU A 115 CD OE1 OE2 REMARK 480 GLU A 118 CD OE1 OE2 REMARK 480 ARG A 161 CD NE CZ NH1 NH2 REMARK 480 LYS A 185 CD CE NZ REMARK 480 VAL B 6 CG1 CG2 REMARK 480 TYR B 8 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLU B 10 CD OE1 OE2 REMARK 480 LYS B 14 CG CD CE NZ REMARK 480 LYS C 14 CG CD CE NZ REMARK 480 LYS C 24 CD CE NZ REMARK 480 LYS C 87 CG CD CE NZ REMARK 480 ARG C 117 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 119 CD CE NZ REMARK 480 LYS C 120 CG CD CE NZ REMARK 480 GLU C 124 CG CD OE1 OE2 REMARK 480 LYS C 127 CG CD CE NZ REMARK 480 GLU C 130 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 27 OG1 THR B 109 2.13 REMARK 500 OE2 GLU C 11 OG1 THR C 13 2.17 REMARK 500 N ALA B 86 OE2 GLU C 75 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 3 106.54 -167.75 REMARK 500 PRO A 20 -174.38 -64.53 REMARK 500 ASP A 52 9.29 87.49 REMARK 500 PHE A 56 -55.49 -137.75 REMARK 500 ILE A 67 -129.34 -72.59 REMARK 500 THR A 72 113.19 69.35 REMARK 500 PHE A 84 6.29 -65.20 REMARK 500 LYS A 94 -85.10 -39.40 REMARK 500 TYR A 140 79.32 -107.68 REMARK 500 LYS A 142 39.57 72.64 REMARK 500 ASN A 162 61.70 64.75 REMARK 500 LEU A 188 90.68 -64.04 REMARK 500 GLU B 9 -110.97 73.66 REMARK 500 GLU B 10 -135.89 -109.55 REMARK 500 GLU B 77 156.47 170.94 REMARK 500 ASP B 106 -164.61 -105.47 REMARK 500 SER C 97 -1.40 63.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 THR A 54 OG1 76.2 REMARK 620 3 GSP A 301 O2G 133.2 82.1 REMARK 620 4 GSP A 301 O1B 82.7 141.9 90.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE C 201 DBREF 6H5B A 1 195 UNP Q1DB04 MGLA_MYXXD 1 195 DBREF 6H5B B 1 159 UNP Q50883 Q50883_MYXXA 1 159 DBREF 6H5B C 1 159 UNP Q50883 Q50883_MYXXA 1 159 SEQADV 6H5B HIS A 196 UNP Q1DB04 EXPRESSION TAG SEQADV 6H5B HIS A 197 UNP Q1DB04 EXPRESSION TAG SEQADV 6H5B HIS A 198 UNP Q1DB04 EXPRESSION TAG SEQADV 6H5B HIS A 199 UNP Q1DB04 EXPRESSION TAG SEQADV 6H5B HIS A 200 UNP Q1DB04 EXPRESSION TAG SEQADV 6H5B HIS A 201 UNP Q1DB04 EXPRESSION TAG SEQADV 6H5B GLY B 0 UNP Q50883 EXPRESSION TAG SEQADV 6H5B GLY C 0 UNP Q50883 EXPRESSION TAG SEQRES 1 A 201 MET SER PHE ILE ASN TYR SER SER ARG GLU ILE ASN CYS SEQRES 2 A 201 LYS ILE VAL TYR TYR GLY PRO GLY LEU CYS GLY LYS THR SEQRES 3 A 201 THR ASN LEU GLN TYR ILE TYR ASN LYS THR ALA ALA GLU SEQRES 4 A 201 THR LYS GLY LYS LEU ILE SER LEU SER THR GLU THR ASP SEQRES 5 A 201 ARG THR LEU PHE PHE ASP PHE LEU PRO LEU SER LEU GLY SEQRES 6 A 201 GLU ILE ARG GLY PHE LYS THR ARG PHE HIS LEU TYR THR SEQRES 7 A 201 VAL PRO GLY GLN VAL PHE TYR ASP ALA SER ARG LYS LEU SEQRES 8 A 201 ILE LEU LYS GLY VAL ASP GLY VAL VAL PHE VAL ALA ASP SEQRES 9 A 201 SER GLN ILE GLU ARG MET GLU ALA ASN MET GLU SER LEU SEQRES 10 A 201 GLU ASN LEU ARG ILE ASN LEU ALA GLU GLN GLY TYR ASP SEQRES 11 A 201 LEU ASN LYS ILE PRO TYR VAL ILE GLN TYR ASN LYS ARG SEQRES 12 A 201 ASP LEU PRO ASN ALA VAL THR VAL GLU GLU MET ARG LYS SEQRES 13 A 201 ALA LEU ASN HIS ARG ASN ILE PRO GLU TYR GLN ALA VAL SEQRES 14 A 201 ALA PRO THR GLY VAL GLY VAL PHE ASP THR LEU LYS ALA SEQRES 15 A 201 VAL ALA LYS LEU VAL LEU THR GLU LEU LYS LYS GLY GLY SEQRES 16 A 201 HIS HIS HIS HIS HIS HIS SEQRES 1 B 160 GLY MET GLY THR GLN LEU VAL MET TYR GLU GLU GLU PHE SEQRES 2 B 160 THR LYS ILE ASN ALA VAL CYS ASP ARG LEU THR LYS ASP SEQRES 3 B 160 ALA ASN ALA LYS VAL VAL PHE LEU VAL ASP LYS ASN GLY SEQRES 4 B 160 GLN LEU ILE SER SER ALA GLY GLN THR GLN ASN ILE ASP SEQRES 5 B 160 THR THR SER LEU ALA SER LEU THR ALA GLY ASN VAL ALA SEQRES 6 B 160 ALA MET GLY GLY LEU ALA LYS LEU ILE GLY GLU ASN GLU SEQRES 7 B 160 PHE PRO ASN GLN PHE HIS GLU GLY ALA LYS ASP SER LEU SEQRES 8 B 160 TYR MET THR ILE VAL GLY SER ARG VAL VAL LEU VAL VAL SEQRES 9 B 160 ILE PHE ASP ASN ARG THR SER LEU GLY LEU VAL ARG LEU SEQRES 10 B 160 ARG ILE LYS LYS ALA SER ASP GLU LEU THR LYS ILE PHE SEQRES 11 B 160 GLU SER LEU VAL LYS LYS THR ASP SER PRO GLY ALA GLY SEQRES 12 B 160 SER PRO PHE ALA GLU ILE SER ASP ASP ASP ILE ASP ASN SEQRES 13 B 160 LEU PHE SER GLU SEQRES 1 C 160 GLY MET GLY THR GLN LEU VAL MET TYR GLU GLU GLU PHE SEQRES 2 C 160 THR LYS ILE ASN ALA VAL CYS ASP ARG LEU THR LYS ASP SEQRES 3 C 160 ALA ASN ALA LYS VAL VAL PHE LEU VAL ASP LYS ASN GLY SEQRES 4 C 160 GLN LEU ILE SER SER ALA GLY GLN THR GLN ASN ILE ASP SEQRES 5 C 160 THR THR SER LEU ALA SER LEU THR ALA GLY ASN VAL ALA SEQRES 6 C 160 ALA MET GLY GLY LEU ALA LYS LEU ILE GLY GLU ASN GLU SEQRES 7 C 160 PHE PRO ASN GLN PHE HIS GLU GLY ALA LYS ASP SER LEU SEQRES 8 C 160 TYR MET THR ILE VAL GLY SER ARG VAL VAL LEU VAL VAL SEQRES 9 C 160 ILE PHE ASP ASN ARG THR SER LEU GLY LEU VAL ARG LEU SEQRES 10 C 160 ARG ILE LYS LYS ALA SER ASP GLU LEU THR LYS ILE PHE SEQRES 11 C 160 GLU SER LEU VAL LYS LYS THR ASP SER PRO GLY ALA GLY SEQRES 12 C 160 SER PRO PHE ALA GLU ILE SER ASP ASP ASP ILE ASP ASN SEQRES 13 C 160 LEU PHE SER GLU HET GSP A 301 32 HET MG A 302 1 HET EPE A 303 32 HET EPE A 304 32 HET 1PE A 305 38 HET PEG B 201 7 HET PEG B 202 7 HET 1PE C 201 38 HET PEG C 202 7 HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EPE HEPES HETSYN 1PE PEG400 FORMUL 4 GSP C10 H16 N5 O13 P3 S FORMUL 5 MG MG 2+ FORMUL 6 EPE 2(C8 H18 N2 O4 S) FORMUL 8 1PE 2(C10 H22 O6) FORMUL 9 PEG 3(C4 H10 O3) FORMUL 13 HOH *13(H2 O) HELIX 1 AA1 GLY A 24 LYS A 35 1 12 HELIX 2 AA2 GLN A 82 PHE A 84 5 3 HELIX 3 AA3 TYR A 85 LYS A 90 1 6 HELIX 4 AA4 LEU A 91 LYS A 94 5 4 HELIX 5 AA5 ARG A 109 GLY A 128 1 20 HELIX 6 AA6 THR A 150 ASN A 159 1 10 HELIX 7 AA7 GLY A 175 LEU A 188 1 14 HELIX 8 AA8 PHE B 12 ASN B 27 1 16 HELIX 9 AA9 ASP B 51 GLY B 74 1 24 HELIX 10 AB1 SER B 110 GLU B 130 1 21 HELIX 11 AB2 PHE C 12 ALA C 26 1 15 HELIX 12 AB3 ASP C 51 ILE C 73 1 23 HELIX 13 AB4 SER C 110 PHE C 129 1 20 SHEET 1 AA1 5 PHE A 3 ASN A 5 0 SHEET 2 AA1 5 GLU A 10 TYR A 18 -1 O ASN A 12 N PHE A 3 SHEET 3 AA1 5 ARG A 73 THR A 78 1 O ARG A 73 N ILE A 11 SHEET 4 AA1 5 THR A 54 LEU A 62 -1 N LEU A 60 O LEU A 76 SHEET 5 AA1 5 ILE A 45 SER A 48 -1 N LEU A 47 O LEU A 55 SHEET 1 AA2 5 PHE A 3 ASN A 5 0 SHEET 2 AA2 5 GLU A 10 TYR A 18 -1 O ASN A 12 N PHE A 3 SHEET 3 AA2 5 GLY A 98 ASP A 104 1 O VAL A 100 N VAL A 16 SHEET 4 AA2 5 TYR A 136 ASN A 141 1 O GLN A 139 N PHE A 101 SHEET 5 AA2 5 GLU A 165 GLN A 167 1 O TYR A 166 N TYR A 140 SHEET 1 AA310 LEU B 40 GLY B 45 0 SHEET 2 AA310 VAL B 30 ASP B 35 -1 N LEU B 33 O ILE B 41 SHEET 3 AA310 VAL B 99 PHE B 105 -1 O VAL B 102 N PHE B 32 SHEET 4 AA310 SER B 89 VAL B 95 -1 N VAL B 95 O VAL B 99 SHEET 5 AA310 ASN B 80 HIS B 83 -1 N HIS B 83 O LEU B 90 SHEET 6 AA310 ASN C 80 GLU C 84 -1 O GLU C 84 N ASN B 80 SHEET 7 AA310 ASP C 88 VAL C 95 -1 O MET C 92 N GLN C 81 SHEET 8 AA310 VAL C 99 ASP C 106 -1 O VAL C 99 N VAL C 95 SHEET 9 AA310 VAL C 30 ASP C 35 -1 N VAL C 30 O ILE C 104 SHEET 10 AA310 LEU C 40 GLY C 45 -1 O ILE C 41 N LEU C 33 LINK NZ LYS A 25 O2B GSP A 301 1555 1555 1.30 LINK OG1 THR A 26 MG MG A 302 1555 1555 2.26 LINK OG1 THR A 54 MG MG A 302 1555 1555 2.02 LINK O2G GSP A 301 MG MG A 302 1555 1555 2.00 LINK O1B GSP A 301 MG MG A 302 1555 1555 1.92 SITE 1 AC1 20 PRO A 20 GLY A 21 LEU A 22 CYS A 23 SITE 2 AC1 20 GLY A 24 LYS A 25 THR A 26 THR A 27 SITE 3 AC1 20 THR A 54 PRO A 80 GLY A 81 ASN A 141 SITE 4 AC1 20 LYS A 142 ASP A 144 LEU A 145 VAL A 169 SITE 5 AC1 20 ALA A 170 PRO A 171 THR A 172 MG A 302 SITE 1 AC2 3 THR A 26 THR A 54 GSP A 301 SITE 1 AC3 1 LYS A 181 SITE 1 AC4 2 LYS A 35 PHE A 177 SITE 1 AC5 1 GLU A 190 SITE 1 AC6 1 MET B 7 SITE 1 AC7 4 SER A 2 ILE A 4 GLU C 10 ARG C 98 CRYST1 135.101 135.101 60.382 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007402 0.004273 0.000000 0.00000 SCALE2 0.000000 0.008547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016561 0.00000