HEADER LYASE 24-JUL-18 6H5D TITLE CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY TITLE 2 LIGAND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-DEHYDROQUINASE,TYPE I DHQASE,TYPE I DEHYDROQUINASE,DHQ1; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 90370; SOURCE 4 ATCC: 19430; SOURCE 5 GENE: AROD, STY1760, T1231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYASE ACTIVITY, CHORISMATE BIOSYNTHETIC PROCESS, 3-DEHYDROQUINASE, KEYWDS 2 COVALENT INHIBITOR, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SANZ-GAITERO,M.MANEIRO,E.LENCE,J.M.OTERO,P.THOMPSON,A.R.HAWKINS, AUTHOR 2 C.GONZALEZ-BELLO,M.J.VAN RAAIJ REVDAT 6 20-NOV-24 6H5D 1 REMARK REVDAT 5 17-JAN-24 6H5D 1 REMARK REVDAT 4 09-OCT-19 6H5D 1 JRNL REVDAT 3 28-AUG-19 6H5D 1 COMPND HETNAM REVDAT 2 07-AUG-19 6H5D 1 AUTHOR JRNL REVDAT 1 24-JUL-19 6H5D 0 JRNL AUTH M.MANEIRO,E.LENCE,M.SANZ-GAITERO,J.M.OTERO,M.J.VAN RAAIJ, JRNL AUTH 2 P.THOMPSON,A.R.HAWKINS,C.GONZALEZ-BELLO JRNL TITL HYDROXYLAMMONIUM DERIVATIVES FOR SELECTIVE ACTIVE-SITE JRNL TITL 2 LYSINE MODIFICATION IN THE ANTI-VIRULENCE BACTERIAL TARGET JRNL TITL 3 DHQ1 ENZYME. JRNL REF ORG CHEM FRONT V. 9 3127 2019 JRNL REFN ESSN 2052-4129 JRNL DOI 10.1039/C9QO00453J REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 109028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 435 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 759 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4186 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4051 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5738 ; 1.482 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9427 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 5.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;39.616 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;12.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4665 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 797 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2088 ; 1.055 ; 1.048 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2087 ; 1.055 ; 1.048 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2625 ; 1.372 ; 1.578 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2626 ; 1.372 ; 1.578 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2098 ; 1.369 ; 1.280 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2098 ; 1.369 ; 1.280 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3077 ; 1.685 ; 1.831 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4879 ; 3.403 ;14.821 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4673 ; 2.784 ;13.706 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8237 ; 1.146 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 470 ;27.499 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8422 ; 7.542 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 252 B 1 252 16462 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6H5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 59.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 2000 MME, 100MM HEPES, PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.02850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 206 173.38 71.19 REMARK 500 LYS A 229 -35.11 -130.34 REMARK 500 ALA B 206 176.69 72.23 REMARK 500 LYS B 229 -38.34 -131.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 796 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 800 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 808 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 812 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 813 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH A 817 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH B 739 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 740 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 741 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 742 DISTANCE = 6.67 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WPL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide WPL B 301 and LYS B REMARK 800 170 DBREF 6H5D A 1 252 UNP P24670 AROD_SALTI 1 252 DBREF 6H5D B 1 252 UNP P24670 AROD_SALTI 1 252 SEQRES 1 A 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 A 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 A 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 A 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 A 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 A 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 A 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 A 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 A 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 A 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 A 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 A 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 A 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 A 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 A 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 A 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 A 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 A 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 A 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 A 252 ILE LEU HIS ASN ALA SEQRES 1 B 252 MET LYS THR VAL THR VAL LYS ASN LEU ILE ILE GLY GLU SEQRES 2 B 252 GLY MET PRO LYS ILE ILE VAL SER LEU MET GLY ARG ASP SEQRES 3 B 252 ILE ASN SER VAL LYS ALA GLU ALA LEU ALA TYR ARG GLU SEQRES 4 B 252 ALA THR PHE ASP ILE LEU GLU TRP ARG VAL ASP HIS PHE SEQRES 5 B 252 MET ASP ILE ALA SER THR GLN SER VAL LEU THR ALA ALA SEQRES 6 B 252 ARG VAL ILE ARG ASP ALA MET PRO ASP ILE PRO LEU LEU SEQRES 7 B 252 PHE THR PHE ARG SER ALA LYS GLU GLY GLY GLU GLN THR SEQRES 8 B 252 ILE THR THR GLN HIS TYR LEU THR LEU ASN ARG ALA ALA SEQRES 9 B 252 ILE ASP SER GLY LEU VAL ASP MET ILE ASP LEU GLU LEU SEQRES 10 B 252 PHE THR GLY ASP ALA ASP VAL LYS ALA THR VAL ASP TYR SEQRES 11 B 252 ALA HIS ALA HIS ASN VAL TYR VAL VAL MET SER ASN HIS SEQRES 12 B 252 ASP PHE HIS GLN THR PRO SER ALA GLU GLU MET VAL LEU SEQRES 13 B 252 ARG LEU ARG LYS MET GLN ALA LEU GLY ALA ASP ILE PRO SEQRES 14 B 252 LYS ILE ALA VAL MET PRO GLN SER LYS HIS ASP VAL LEU SEQRES 15 B 252 THR LEU LEU THR ALA THR LEU GLU MET GLN GLN HIS TYR SEQRES 16 B 252 ALA ASP ARG PRO VAL ILE THR MET SER MET ALA LYS GLU SEQRES 17 B 252 GLY VAL ILE SER ARG LEU ALA GLY GLU VAL PHE GLY SER SEQRES 18 B 252 ALA ALA THR PHE GLY ALA VAL LYS GLN ALA SER ALA PRO SEQRES 19 B 252 GLY GLN ILE ALA VAL ASN ASP LEU ARG SER VAL LEU MET SEQRES 20 B 252 ILE LEU HIS ASN ALA HET WPL A 301 13 HET WPL B 301 13 HETNAM WPL (1~{S},3~{S},4~{R},5~{R})-3-METHYL-1,4,5- HETNAM 2 WPL TRIS(HYDROXYL)CYCLOHEXANE-1-CARBOXYLIC ACID FORMUL 3 WPL 2(C8 H14 O5) FORMUL 5 HOH *759(H2 O) HELIX 1 AA1 ASP A 26 ARG A 38 1 13 HELIX 2 AA2 ASP A 50 PHE A 52 5 3 HELIX 3 AA3 SER A 57 MET A 72 1 16 HELIX 4 AA4 SER A 83 GLY A 87 5 5 HELIX 5 AA5 THR A 93 SER A 107 1 15 HELIX 6 AA6 GLY A 120 HIS A 134 1 15 HELIX 7 AA7 SER A 150 LEU A 164 1 15 HELIX 8 AA8 SER A 177 TYR A 195 1 19 HELIX 9 AA9 ALA A 206 GLU A 208 5 3 HELIX 10 AB1 GLY A 209 ALA A 215 1 7 HELIX 11 AB2 ALA A 215 GLY A 220 1 6 HELIX 12 AB3 ALA A 238 ALA A 252 1 15 HELIX 13 AB4 ASP B 26 ARG B 38 1 13 HELIX 14 AB5 ASP B 50 PHE B 52 5 3 HELIX 15 AB6 SER B 57 MET B 72 1 16 HELIX 16 AB7 SER B 83 GLY B 87 5 5 HELIX 17 AB8 THR B 93 GLY B 108 1 16 HELIX 18 AB9 GLY B 120 HIS B 134 1 15 HELIX 19 AC1 SER B 150 LEU B 164 1 15 HELIX 20 AC2 SER B 177 TYR B 195 1 19 HELIX 21 AC3 ALA B 206 GLU B 208 5 3 HELIX 22 AC4 GLY B 209 ALA B 215 1 7 HELIX 23 AC5 ALA B 215 GLY B 220 1 6 HELIX 24 AC6 ALA B 238 ALA B 252 1 15 SHEET 1 AA1 2 VAL A 4 VAL A 6 0 SHEET 2 AA1 2 LEU A 9 ILE A 11 -1 O ILE A 11 N VAL A 4 SHEET 1 AA2 8 ILE A 201 SER A 204 0 SHEET 2 AA2 8 ILE A 168 VAL A 173 1 N PRO A 169 O ILE A 201 SHEET 3 AA2 8 TYR A 137 ASP A 144 1 N MET A 140 O LYS A 170 SHEET 4 AA2 8 MET A 112 GLU A 116 1 N ILE A 113 O VAL A 139 SHEET 5 AA2 8 LEU A 77 THR A 80 1 N PHE A 79 O ASP A 114 SHEET 6 AA2 8 ILE A 44 ARG A 48 1 N LEU A 45 O LEU A 78 SHEET 7 AA2 8 LYS A 17 LEU A 22 1 N VAL A 20 O GLU A 46 SHEET 8 AA2 8 ALA A 223 PHE A 225 1 O THR A 224 N ILE A 19 SHEET 1 AA3 2 VAL B 4 VAL B 6 0 SHEET 2 AA3 2 LEU B 9 ILE B 11 -1 O ILE B 11 N VAL B 4 SHEET 1 AA4 8 ILE B 201 SER B 204 0 SHEET 2 AA4 8 ILE B 168 VAL B 173 1 N PRO B 169 O ILE B 201 SHEET 3 AA4 8 TYR B 137 ASP B 144 1 N MET B 140 O LYS B 170 SHEET 4 AA4 8 MET B 112 GLU B 116 1 N ILE B 113 O VAL B 139 SHEET 5 AA4 8 LEU B 77 THR B 80 1 N PHE B 79 O MET B 112 SHEET 6 AA4 8 ILE B 44 ARG B 48 1 N LEU B 45 O LEU B 78 SHEET 7 AA4 8 LYS B 17 LEU B 22 1 N VAL B 20 O GLU B 46 SHEET 8 AA4 8 ALA B 223 PHE B 225 1 O THR B 224 N ILE B 19 LINK NZ LYS A 170 CAJ WPL A 301 1555 1555 1.40 LINK NZ LYS B 170 CAJ WPL B 301 1555 1555 1.43 SITE 1 AC1 13 SER A 21 GLU A 46 ARG A 48 ARG A 82 SITE 2 AC1 13 LYS A 170 MET A 203 MET A 205 ARG A 213 SITE 3 AC1 13 PHE A 225 SER A 232 ALA A 233 GLN A 236 SITE 4 AC1 13 HOH A 560 SITE 1 AC2 22 SER B 21 GLU B 46 ARG B 48 ARG B 82 SITE 2 AC2 22 ASP B 114 MET B 140 SER B 141 ASN B 142 SITE 3 AC2 22 HIS B 143 MET B 161 ILE B 168 PRO B 169 SITE 4 AC2 22 ILE B 171 ILE B 201 MET B 203 MET B 205 SITE 5 AC2 22 ARG B 213 PHE B 225 SER B 232 ALA B 233 SITE 6 AC2 22 GLN B 236 HOH B 587 CRYST1 60.219 44.057 84.600 90.00 95.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016606 0.000000 0.001525 0.00000 SCALE2 0.000000 0.022698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011870 0.00000