HEADER TRANSFERASE 26-JUL-18 6H62 TITLE QTRT1, THE CATALYTIC SUBUNIT OF MURINE TRNA-GUANINE TRANSGLYCOSYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: QTRT1, TGT, TGUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSGLYCOSYLASE, TIM BARREL EXPDTA X-RAY DIFFRACTION AUTHOR C.BEHRENS,A.HEINE,K.REUTER REVDAT 2 28-JUN-23 6H62 1 JRNL REVDAT 1 14-AUG-19 6H62 0 JRNL AUTH M.SEBASTIANI,C.BEHRENS,S.DORR,H.D.GERBER,R.BENAZZA, JRNL AUTH 2 O.HERNANDEZ-ALBA,S.CIANFERANI,G.KLEBE,A.HEINE,K.REUTER JRNL TITL STRUCTURAL AND BIOCHEMICAL INVESTIGATION OF THE JRNL TITL 2 HETERODIMERIC MURINE TRNA-GUANINE TRANSGLYCOSYLASE. JRNL REF ACS CHEM.BIOL. V. 17 2229 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 35815944 JRNL DOI 10.1021/ACSCHEMBIO.2C00368 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9926 - 6.6141 0.99 3151 140 0.1948 0.2215 REMARK 3 2 6.6141 - 5.2519 1.00 3181 136 0.2063 0.2257 REMARK 3 3 5.2519 - 4.5887 0.99 3184 137 0.1527 0.2133 REMARK 3 4 4.5887 - 4.1694 1.00 3157 133 0.1476 0.1816 REMARK 3 5 4.1694 - 3.8707 1.00 3214 138 0.1539 0.2020 REMARK 3 6 3.8707 - 3.6426 1.00 3149 140 0.1730 0.2130 REMARK 3 7 3.6426 - 3.4602 1.00 3195 139 0.1863 0.2354 REMARK 3 8 3.4602 - 3.3096 1.00 3170 135 0.1939 0.2321 REMARK 3 9 3.3096 - 3.1822 1.00 3195 138 0.2060 0.2480 REMARK 3 10 3.1822 - 3.0724 1.00 3159 141 0.2113 0.2441 REMARK 3 11 3.0724 - 2.9764 1.00 3197 143 0.2192 0.2438 REMARK 3 12 2.9764 - 2.8913 1.00 3159 134 0.2226 0.2667 REMARK 3 13 2.8913 - 2.8152 1.00 3185 137 0.2255 0.3109 REMARK 3 14 2.8152 - 2.7465 1.00 3189 135 0.2310 0.3024 REMARK 3 15 2.7465 - 2.6841 0.97 3046 128 0.2468 0.2780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5517 REMARK 3 ANGLE : 0.450 7503 REMARK 3 CHIRALITY : 0.038 881 REMARK 3 PLANARITY : 0.005 964 REMARK 3 DIHEDRAL : 13.241 3291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9582 50.8571 41.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.2824 REMARK 3 T33: 0.3020 T12: -0.0173 REMARK 3 T13: 0.0015 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.2621 L22: 1.7156 REMARK 3 L33: 1.8370 L12: -0.3912 REMARK 3 L13: -0.4364 L23: -0.3600 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: 0.0775 S13: -0.4739 REMARK 3 S21: -0.1117 S22: -0.0726 S23: -0.0771 REMARK 3 S31: 0.0283 S32: 0.0026 S33: 0.0054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5118 39.5771 54.2235 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.3838 REMARK 3 T33: 0.5111 T12: -0.0557 REMARK 3 T13: -0.0706 T23: 0.1488 REMARK 3 L TENSOR REMARK 3 L11: 0.8512 L22: 2.6020 REMARK 3 L33: 0.8695 L12: -0.0148 REMARK 3 L13: 0.0418 L23: -0.7813 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.2747 S13: -0.4939 REMARK 3 S21: 0.3071 S22: -0.1716 S23: -0.2983 REMARK 3 S31: 0.1281 S32: 0.0881 S33: 0.1073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6992 61.4511 50.5776 REMARK 3 T TENSOR REMARK 3 T11: 0.3683 T22: 0.3913 REMARK 3 T33: 0.3209 T12: 0.0034 REMARK 3 T13: -0.0119 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 2.9842 L22: 1.7791 REMARK 3 L33: 2.0213 L12: 0.1613 REMARK 3 L13: 0.3923 L23: 0.2836 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.3332 S13: 0.0605 REMARK 3 S21: 0.1303 S22: -0.1972 S23: 0.3271 REMARK 3 S31: -0.2955 S32: -0.3160 S33: 0.1484 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1010 36.3993 23.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.3372 T22: 0.2651 REMARK 3 T33: 0.2499 T12: 0.0099 REMARK 3 T13: -0.0378 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.9791 L22: 1.3482 REMARK 3 L33: 2.0953 L12: 0.0646 REMARK 3 L13: 0.6877 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.1279 S12: 0.0571 S13: 0.1591 REMARK 3 S21: -0.2413 S22: -0.0389 S23: 0.0443 REMARK 3 S31: -0.2866 S32: 0.1173 S33: 0.1615 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4693 53.5613 28.1204 REMARK 3 T TENSOR REMARK 3 T11: 0.5820 T22: 0.4796 REMARK 3 T33: 0.5536 T12: 0.0903 REMARK 3 T13: -0.1021 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.3786 L22: 1.8208 REMARK 3 L33: 0.4717 L12: -1.4490 REMARK 3 L13: -0.5093 L23: 0.9799 REMARK 3 S TENSOR REMARK 3 S11: -0.2275 S12: -0.2880 S13: 0.6565 REMARK 3 S21: -0.0931 S22: 0.3054 S23: -0.1751 REMARK 3 S31: -0.4283 S32: 0.1659 S33: -0.0529 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1154 48.1190 27.3639 REMARK 3 T TENSOR REMARK 3 T11: 0.3222 T22: 0.2739 REMARK 3 T33: 0.3470 T12: 0.0595 REMARK 3 T13: -0.0840 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9819 L22: 2.9016 REMARK 3 L33: 1.5629 L12: -0.2135 REMARK 3 L13: 0.1867 L23: -0.6987 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: 0.0964 S13: 0.2689 REMARK 3 S21: -0.0688 S22: -0.0546 S23: 0.4207 REMARK 3 S31: -0.3116 S32: -0.0888 S33: 0.0934 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 274 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7749 27.0220 39.1292 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.2674 REMARK 3 T33: 0.2721 T12: -0.0133 REMARK 3 T13: -0.0636 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.1955 L22: 0.9578 REMARK 3 L33: 1.8990 L12: 1.1721 REMARK 3 L13: 0.4173 L23: -0.2281 REMARK 3 S TENSOR REMARK 3 S11: 0.1785 S12: -0.1902 S13: -0.1823 REMARK 3 S21: 0.0676 S22: -0.2904 S23: -0.1430 REMARK 3 S31: 0.0458 S32: 0.1407 S33: 0.0837 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-18; 07-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.1; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282814; 1.283345 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49608 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 13.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.98 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CAPS PH 10.5, 200 MM SODIUM REMARK 280 CHLORIDE, 20% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.85200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.56350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.88350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.56350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.85200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.88350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 TYR A 75 REMARK 465 HIS A 76 REMARK 465 LEU A 77 REMARK 465 GLY A 78 REMARK 465 LEU A 79 REMARK 465 ARG A 80 REMARK 465 PRO A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 LEU A 85 REMARK 465 ILE A 86 REMARK 465 ARG A 87 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 GLN A 90 REMARK 465 VAL A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 PHE A 115 REMARK 465 SER A 116 REMARK 465 LEU A 117 REMARK 465 THR A 403 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 THR B 74 REMARK 465 TYR B 75 REMARK 465 HIS B 76 REMARK 465 LEU B 77 REMARK 465 GLY B 78 REMARK 465 LEU B 79 REMARK 465 ARG B 80 REMARK 465 PRO B 81 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 GLU B 84 REMARK 465 LEU B 85 REMARK 465 ILE B 86 REMARK 465 ARG B 87 REMARK 465 LYS B 88 REMARK 465 ALA B 89 REMARK 465 GLN B 90 REMARK 465 VAL B 112 REMARK 465 SER B 113 REMARK 465 LEU B 114 REMARK 465 PHE B 115 REMARK 465 SER B 116 REMARK 465 LEU B 117 REMARK 465 SER B 164 REMARK 465 THR B 165 REMARK 465 VAL B 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 ARG A 25 NH1 NH2 REMARK 470 ARG A 34 CD NE CZ NH1 NH2 REMARK 470 LYS A 55 NZ REMARK 470 ASN A 73 CG OD1 ND2 REMARK 470 THR A 74 OG1 CG2 REMARK 470 PHE A 95 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 105 OD1 OD2 REMARK 470 PHE A 109 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 MET A 111 CG SD CE REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 131 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 GLU A 134 CD OE1 OE2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 SER A 163 OG REMARK 470 SER A 164 OG REMARK 470 THR A 165 OG1 CG2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 194 CD CE NZ REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 LYS A 215 CE NZ REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 SER A 235 OG REMARK 470 LYS A 252 CE NZ REMARK 470 ARG A 285 CZ NH1 NH2 REMARK 470 ARG A 288 NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 303 CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 GLU A 316 CD OE1 OE2 REMARK 470 HIS A 384 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 385 OG REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 SER B 12 OG REMARK 470 ARG B 34 CD NE CZ NH1 NH2 REMARK 470 LYS B 55 NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 SER B 64 OG REMARK 470 ASN B 73 CG OD1 ND2 REMARK 470 PHE B 95 CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 109 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 111 CG SD CE REMARK 470 SER B 118 OG REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 TYR B 131 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 132 CG OD1 OD2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 ARG B 142 CZ NH1 NH2 REMARK 470 GLU B 145 CD OE1 OE2 REMARK 470 VAL B 161 CG1 CG2 REMARK 470 VAL B 162 CG1 CG2 REMARK 470 SER B 163 OG REMARK 470 THR B 167 OG1 CG2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 HIS B 191 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 194 CD CE NZ REMARK 470 ASP B 208 CG OD1 OD2 REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 470 LYS B 252 CD CE NZ REMARK 470 ARG B 285 CZ NH1 NH2 REMARK 470 ARG B 288 NE CZ NH1 NH2 REMARK 470 LYS B 302 CE NZ REMARK 470 LYS B 303 NZ REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 LYS B 308 CG CD CE NZ REMARK 470 GLU B 316 CD OE1 OE2 REMARK 470 ARG B 378 CD NE CZ NH1 NH2 REMARK 470 ASP B 383 CG OD1 OD2 REMARK 470 SER B 385 OG REMARK 470 GLU B 393 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 100 -157.75 -106.74 REMARK 500 GLN A 110 -75.75 -70.05 REMARK 500 TYR A 131 -82.08 -87.57 REMARK 500 SER A 336 -52.16 -133.33 REMARK 500 ASP A 337 71.14 -114.96 REMARK 500 ARG A 368 48.10 -144.64 REMARK 500 HIS B 100 -157.88 -106.47 REMARK 500 GLN B 110 -74.90 -69.34 REMARK 500 PRO B 130 32.22 -88.96 REMARK 500 TYR B 131 -80.52 -151.37 REMARK 500 HIS B 191 61.89 -150.75 REMARK 500 SER B 336 -51.70 -134.00 REMARK 500 ASP B 337 70.00 -113.92 REMARK 500 ARG B 368 49.54 -145.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 CYS A 319 SG 101.7 REMARK 620 3 CYS A 322 SG 107.0 108.3 REMARK 620 4 HIS A 348 ND1 111.5 119.5 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 317 SG REMARK 620 2 CYS B 319 SG 102.2 REMARK 620 3 CYS B 322 SG 110.3 110.4 REMARK 620 4 HIS B 348 ND1 107.1 117.3 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 DBREF 6H62 A 1 403 UNP Q9JMA2 TGT_MOUSE 1 403 DBREF 6H62 B 1 403 UNP Q9JMA2 TGT_MOUSE 1 403 SEQRES 1 A 403 MET ALA ALA VAL GLY SER PRO GLY SER LEU GLU SER ALA SEQRES 2 A 403 PRO ARG ILE MET ARG LEU VAL ALA GLU CYS SER ARG SER SEQRES 3 A 403 GLY ALA ARG ALA GLY GLU LEU ARG LEU PRO HIS GLY THR SEQRES 4 A 403 VAL ALA THR PRO VAL PHE MET PRO VAL GLY THR GLN ALA SEQRES 5 A 403 THR MET LYS GLY ILE THR THR GLU GLN LEU ASP SER LEU SEQRES 6 A 403 GLY CYS ARG ILE CYS LEU GLY ASN THR TYR HIS LEU GLY SEQRES 7 A 403 LEU ARG PRO GLY PRO GLU LEU ILE ARG LYS ALA GLN GLY SEQRES 8 A 403 LEU HIS GLY PHE MET ASN TRP PRO HIS ASN LEU LEU THR SEQRES 9 A 403 ASP SER GLY GLY PHE GLN MET VAL SER LEU PHE SER LEU SEQRES 10 A 403 SER GLU VAL THR GLU GLU GLY VAL HIS PHE ARG SER PRO SEQRES 11 A 403 TYR ASP GLY GLU GLU THR LEU LEU SER PRO GLU ARG SER SEQRES 12 A 403 VAL GLU ILE GLN ASN ALA LEU GLY SER ASP ILE ILE MET SEQRES 13 A 403 GLN LEU ASP HIS VAL VAL SER SER THR VAL THR GLY PRO SEQRES 14 A 403 LEU VAL GLU GLU ALA MET HIS ARG SER VAL ARG TRP LEU SEQRES 15 A 403 ASP ARG CYS ILE ALA ALA HIS LYS HIS PRO ASP LYS GLN SEQRES 16 A 403 ASN LEU PHE ALA ILE ILE GLN GLY GLY LEU ASN ALA ASP SEQRES 17 A 403 LEU ARG THR THR CYS LEU LYS GLU MET THR LYS ARG ASP SEQRES 18 A 403 VAL PRO GLY PHE ALA ILE GLY GLY LEU SER GLY GLY GLU SEQRES 19 A 403 SER LYS ALA GLN PHE TRP LYS MET VAL ALA LEU SER THR SEQRES 20 A 403 SER MET LEU PRO LYS ASP LYS PRO ARG TYR LEU MET GLY SEQRES 21 A 403 VAL GLY TYR ALA THR ASP LEU VAL VAL CYS VAL ALA LEU SEQRES 22 A 403 GLY CYS ASP MET PHE ASP CYS VAL TYR PRO THR ARG THR SEQRES 23 A 403 ALA ARG PHE GLY SER ALA LEU VAL PRO THR GLY ASN LEU SEQRES 24 A 403 GLN LEU LYS LYS LYS GLN TYR ALA LYS ASP PHE SER PRO SEQRES 25 A 403 ILE ASN PRO GLU CYS PRO CYS PRO THR CYS GLN THR HIS SEQRES 26 A 403 SER ARG ALA PHE LEU HIS ALA LEU LEU HIS SER ASP ASN SEQRES 27 A 403 THR THR ALA LEU HIS HIS LEU THR VAL HIS ASN ILE ALA SEQRES 28 A 403 TYR GLN LEU GLN LEU LEU SER ALA VAL ARG SER SER ILE SEQRES 29 A 403 LEU GLU GLN ARG PHE PRO ASP PHE VAL ARG ASN PHE MET SEQRES 30 A 403 ARG THR MET TYR GLY ASP HIS SER LEU CYS PRO ALA TRP SEQRES 31 A 403 ALA VAL GLU ALA LEU ALA SER VAL GLY ILE MET LEU THR SEQRES 1 B 403 MET ALA ALA VAL GLY SER PRO GLY SER LEU GLU SER ALA SEQRES 2 B 403 PRO ARG ILE MET ARG LEU VAL ALA GLU CYS SER ARG SER SEQRES 3 B 403 GLY ALA ARG ALA GLY GLU LEU ARG LEU PRO HIS GLY THR SEQRES 4 B 403 VAL ALA THR PRO VAL PHE MET PRO VAL GLY THR GLN ALA SEQRES 5 B 403 THR MET LYS GLY ILE THR THR GLU GLN LEU ASP SER LEU SEQRES 6 B 403 GLY CYS ARG ILE CYS LEU GLY ASN THR TYR HIS LEU GLY SEQRES 7 B 403 LEU ARG PRO GLY PRO GLU LEU ILE ARG LYS ALA GLN GLY SEQRES 8 B 403 LEU HIS GLY PHE MET ASN TRP PRO HIS ASN LEU LEU THR SEQRES 9 B 403 ASP SER GLY GLY PHE GLN MET VAL SER LEU PHE SER LEU SEQRES 10 B 403 SER GLU VAL THR GLU GLU GLY VAL HIS PHE ARG SER PRO SEQRES 11 B 403 TYR ASP GLY GLU GLU THR LEU LEU SER PRO GLU ARG SER SEQRES 12 B 403 VAL GLU ILE GLN ASN ALA LEU GLY SER ASP ILE ILE MET SEQRES 13 B 403 GLN LEU ASP HIS VAL VAL SER SER THR VAL THR GLY PRO SEQRES 14 B 403 LEU VAL GLU GLU ALA MET HIS ARG SER VAL ARG TRP LEU SEQRES 15 B 403 ASP ARG CYS ILE ALA ALA HIS LYS HIS PRO ASP LYS GLN SEQRES 16 B 403 ASN LEU PHE ALA ILE ILE GLN GLY GLY LEU ASN ALA ASP SEQRES 17 B 403 LEU ARG THR THR CYS LEU LYS GLU MET THR LYS ARG ASP SEQRES 18 B 403 VAL PRO GLY PHE ALA ILE GLY GLY LEU SER GLY GLY GLU SEQRES 19 B 403 SER LYS ALA GLN PHE TRP LYS MET VAL ALA LEU SER THR SEQRES 20 B 403 SER MET LEU PRO LYS ASP LYS PRO ARG TYR LEU MET GLY SEQRES 21 B 403 VAL GLY TYR ALA THR ASP LEU VAL VAL CYS VAL ALA LEU SEQRES 22 B 403 GLY CYS ASP MET PHE ASP CYS VAL TYR PRO THR ARG THR SEQRES 23 B 403 ALA ARG PHE GLY SER ALA LEU VAL PRO THR GLY ASN LEU SEQRES 24 B 403 GLN LEU LYS LYS LYS GLN TYR ALA LYS ASP PHE SER PRO SEQRES 25 B 403 ILE ASN PRO GLU CYS PRO CYS PRO THR CYS GLN THR HIS SEQRES 26 B 403 SER ARG ALA PHE LEU HIS ALA LEU LEU HIS SER ASP ASN SEQRES 27 B 403 THR THR ALA LEU HIS HIS LEU THR VAL HIS ASN ILE ALA SEQRES 28 B 403 TYR GLN LEU GLN LEU LEU SER ALA VAL ARG SER SER ILE SEQRES 29 B 403 LEU GLU GLN ARG PHE PRO ASP PHE VAL ARG ASN PHE MET SEQRES 30 B 403 ARG THR MET TYR GLY ASP HIS SER LEU CYS PRO ALA TRP SEQRES 31 B 403 ALA VAL GLU ALA LEU ALA SER VAL GLY ILE MET LEU THR HET ZN A 501 1 HET GOL A 502 6 HET ZN B 501 1 HET GOL B 502 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *84(H2 O) HELIX 1 AA1 VAL A 48 MET A 54 1 7 HELIX 2 AA2 THR A 58 LEU A 65 1 8 HELIX 3 AA3 LEU A 92 ASN A 97 1 6 HELIX 4 AA4 SER A 139 GLY A 151 1 13 HELIX 5 AA5 PRO A 169 HIS A 189 1 21 HELIX 6 AA6 ASN A 206 THR A 218 1 13 HELIX 7 AA7 SER A 235 LEU A 250 1 16 HELIX 8 AA8 TYR A 263 LEU A 273 1 11 HELIX 9 AA9 VAL A 281 PHE A 289 1 9 HELIX 10 AB1 LYS A 303 ALA A 307 5 5 HELIX 11 AB2 CYS A 319 HIS A 325 1 7 HELIX 12 AB3 SER A 326 LEU A 334 1 9 HELIX 13 AB4 ASP A 337 GLU A 366 1 30 HELIX 14 AB5 ARG A 368 GLY A 382 1 15 HELIX 15 AB6 ASP A 383 CYS A 387 5 5 HELIX 16 AB7 PRO A 388 VAL A 398 1 11 HELIX 17 AB8 VAL B 48 MET B 54 1 7 HELIX 18 AB9 THR B 58 LEU B 65 1 8 HELIX 19 AC1 LEU B 92 ASN B 97 1 6 HELIX 20 AC2 SER B 139 GLY B 151 1 13 HELIX 21 AC3 PRO B 169 HIS B 189 1 21 HELIX 22 AC4 ASN B 206 THR B 218 1 13 HELIX 23 AC5 SER B 235 LEU B 250 1 16 HELIX 24 AC6 TYR B 263 LEU B 273 1 11 HELIX 25 AC7 VAL B 281 PHE B 289 1 9 HELIX 26 AC8 LYS B 303 ALA B 307 5 5 HELIX 27 AC9 CYS B 319 HIS B 325 1 7 HELIX 28 AD1 SER B 326 ASP B 337 1 12 HELIX 29 AD2 ASP B 337 GLU B 366 1 30 HELIX 30 AD3 ARG B 368 GLY B 382 1 15 HELIX 31 AD4 ASP B 383 CYS B 387 5 5 HELIX 32 AD5 PRO B 388 VAL B 398 1 11 SHEET 1 AA1 3 MET A 17 GLU A 22 0 SHEET 2 AA1 3 ARG A 29 LEU A 35 -1 O ALA A 30 N ALA A 21 SHEET 3 AA1 3 GLY A 38 THR A 42 -1 O THR A 42 N GLY A 31 SHEET 1 AA2 8 VAL A 44 MET A 46 0 SHEET 2 AA2 8 MET A 277 ASP A 279 1 O PHE A 278 N MET A 46 SHEET 3 AA2 8 ARG A 256 MET A 259 1 N LEU A 258 O MET A 277 SHEET 4 AA2 8 GLY A 224 ILE A 227 1 N ILE A 227 O TYR A 257 SHEET 5 AA2 8 ASN A 196 ILE A 201 1 N ALA A 199 O ALA A 226 SHEET 6 AA2 8 ILE A 154 MET A 156 1 N ILE A 155 O ASN A 196 SHEET 7 AA2 8 ASN A 101 THR A 104 1 N THR A 104 O ILE A 154 SHEET 8 AA2 8 ILE A 69 GLY A 72 1 N GLY A 72 O LEU A 103 SHEET 1 AA3 3 GLU A 119 THR A 121 0 SHEET 2 AA3 3 GLY A 124 ARG A 128 -1 O HIS A 126 N GLU A 119 SHEET 3 AA3 3 GLU A 135 LEU A 138 -1 O THR A 136 N PHE A 127 SHEET 1 AA4 2 SER A 291 VAL A 294 0 SHEET 2 AA4 2 GLY A 297 GLN A 300 -1 O LEU A 299 N ALA A 292 SHEET 1 AA5 3 MET B 17 GLU B 22 0 SHEET 2 AA5 3 ARG B 29 LEU B 35 -1 O ALA B 30 N ALA B 21 SHEET 3 AA5 3 GLY B 38 THR B 42 -1 O THR B 42 N GLY B 31 SHEET 1 AA6 8 VAL B 44 MET B 46 0 SHEET 2 AA6 8 MET B 277 ASP B 279 1 O PHE B 278 N MET B 46 SHEET 3 AA6 8 ARG B 256 MET B 259 1 N LEU B 258 O MET B 277 SHEET 4 AA6 8 GLY B 224 ILE B 227 1 N ILE B 227 O TYR B 257 SHEET 5 AA6 8 ASN B 196 ILE B 201 1 N ALA B 199 O ALA B 226 SHEET 6 AA6 8 ILE B 154 MET B 156 1 N ILE B 155 O ASN B 196 SHEET 7 AA6 8 ASN B 101 THR B 104 1 N THR B 104 O ILE B 154 SHEET 8 AA6 8 ILE B 69 GLY B 72 1 N GLY B 72 O LEU B 103 SHEET 1 AA7 3 GLU B 119 THR B 121 0 SHEET 2 AA7 3 GLY B 124 ARG B 128 -1 O HIS B 126 N GLU B 119 SHEET 3 AA7 3 GLU B 135 LEU B 138 -1 O THR B 136 N PHE B 127 SHEET 1 AA8 2 SER B 291 VAL B 294 0 SHEET 2 AA8 2 GLY B 297 GLN B 300 -1 O LEU B 299 N ALA B 292 LINK SG CYS A 317 ZN ZN A 501 1555 1555 2.44 LINK SG CYS A 319 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 322 ZN ZN A 501 1555 1555 2.36 LINK ND1 HIS A 348 ZN ZN A 501 1555 1555 2.12 LINK SG CYS B 317 ZN ZN B 501 1555 1555 2.43 LINK SG CYS B 319 ZN ZN B 501 1555 1555 2.31 LINK SG CYS B 322 ZN ZN B 501 1555 1555 2.38 LINK ND1 HIS B 348 ZN ZN B 501 1555 1555 2.22 CISPEP 1 THR A 42 PRO A 43 0 1.01 CISPEP 2 THR B 42 PRO B 43 0 1.13 SITE 1 AC1 4 CYS A 317 CYS A 319 CYS A 322 HIS A 348 SITE 1 AC2 2 GLN A 355 ALA A 359 SITE 1 AC3 4 CYS B 317 CYS B 319 CYS B 322 HIS B 348 SITE 1 AC4 3 PRO B 295 GLN B 355 HOH B 604 CRYST1 83.704 93.767 117.127 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008538 0.00000