HEADER LIPID BINDING PROTEIN 28-JUL-18 6H6N TITLE UBIJ-SCP2 UBIQUINONE SYNTHESIS PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUINONE BIOSYNTHESIS PROTEIN UBIJ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: UBIJ, YIGP, B3834, JW3811; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SCP2 LIPID BINDING PROTEIN UBIQUINONE SYNTHESIS PROTEIN, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.D.FYFE,P.LEGRAND,L.PECQUEUR,L.CICCONE,M.LOMBARD,M.FONTECAVE REVDAT 3 15-MAY-24 6H6N 1 LINK REVDAT 2 01-MAY-19 6H6N 1 JRNL REVDAT 1 13-FEB-19 6H6N 0 JRNL AUTH M.HAJJ CHEHADE,L.PELOSI,C.D.FYFE,L.LOISEAU,B.RASCALOU, JRNL AUTH 2 S.BRUGIERE,K.KAZEMZADEH,C.D.VO,L.CICCONE,L.AUSSEL,Y.COUTE, JRNL AUTH 3 M.FONTECAVE,F.BARRAS,M.LOMBARD,F.PIERREL JRNL TITL A SOLUBLE METABOLON SYNTHESIZES THE ISOPRENOID LIPID JRNL TITL 2 UBIQUINONE. JRNL REF CELL CHEM BIOL V. 26 482 2019 JRNL REFN ESSN 2451-9456 JRNL PMID 30686758 JRNL DOI 10.1016/J.CHEMBIOL.2018.12.001 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 13091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2031 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1930 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1825 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 206 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26360 REMARK 3 B22 (A**2) : 1.12600 REMARK 3 B33 (A**2) : 0.13770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.284 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.198 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.264 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.194 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1905 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2590 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 655 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 46 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 277 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1905 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 252 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2135 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.00 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.66 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.1805 4.7661 25.0201 REMARK 3 T TENSOR REMARK 3 T11: -0.3637 T22: -0.3028 REMARK 3 T33: -0.2782 T12: -0.0012 REMARK 3 T13: -0.0138 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.2218 L22: 1.6486 REMARK 3 L33: 1.2319 L12: 0.0266 REMARK 3 L13: 0.1859 L23: 0.1594 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.1746 S13: -0.1224 REMARK 3 S21: 0.0356 S22: -0.0308 S23: -0.0924 REMARK 3 S31: 0.0807 S32: -0.1228 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.0161 24.7873 9.9721 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.1601 REMARK 3 T33: 0.3199 T12: 0.1628 REMARK 3 T13: -0.0487 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.9139 L22: 1.5356 REMARK 3 L33: 0.6166 L12: -0.7028 REMARK 3 L13: 0.1576 L23: -0.1047 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0607 S13: 0.1040 REMARK 3 S21: -0.1467 S22: -0.0428 S23: 0.4147 REMARK 3 S31: -0.3761 S32: -0.2717 S33: 0.0147 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.6488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 40.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 225 MM CALCIUM CHLORIDE, 100 MM MMT REMARK 280 BUFFER PH 9, 11% W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 11 REMARK 465 PRO B 130 REMARK 465 ALA B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 12 CG SD CE REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 MET B 12 CG SD CE REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 7 84.42 -69.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 23 OE1 REMARK 620 2 GLU A 23 OE2 51.7 REMARK 620 3 ASP A 69 OD1 94.1 97.2 REMARK 620 4 HOH A 319 O 67.6 117.4 101.3 REMARK 620 5 HOH A 333 O 78.9 75.8 172.2 79.3 REMARK 620 6 HOH B 317 O 130.4 79.5 82.5 161.7 99.4 REMARK 620 7 HOH B 345 O 142.7 165.5 84.7 76.1 102.9 86.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 51 OE1 REMARK 620 2 GLU A 51 OE2 37.8 REMARK 620 3 HOH A 356 O 73.2 81.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 77 OD1 REMARK 620 2 ASP A 77 OD2 50.7 REMARK 620 3 ALA A 78 O 74.5 79.5 REMARK 620 4 HOH A 327 O 122.2 71.5 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD1 REMARK 620 2 ASP A 79 OD2 54.2 REMARK 620 3 HOH A 304 O 145.7 92.0 REMARK 620 4 HOH A 335 O 92.7 89.5 80.5 REMARK 620 5 GLU B 23 OE1 92.2 39.8 53.6 74.5 REMARK 620 6 GLU B 23 OE2 95.6 43.3 50.2 73.8 3.4 REMARK 620 7 ASP B 69 OD1 94.0 41.6 51.8 74.2 1.7 1.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 GLU A 127 OE1 129.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 126 O REMARK 620 2 ASP A 129 O 86.1 REMARK 620 3 ALA A 131 O 160.3 99.3 REMARK 620 4 HOH A 311 O 81.3 166.4 90.9 REMARK 620 5 HOH A 320 O 92.3 96.9 68.3 78.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB B 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 73 OE1 REMARK 620 2 GLU B 73 OE2 53.9 REMARK 620 3 HOH B 337 O 82.2 91.9 REMARK 620 4 HOH B 340 O 79.6 87.1 158.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 O REMARK 620 2 ASP B 124 OD1 80.0 REMARK 620 3 GLU B 127 O 81.3 161.3 REMARK 620 4 ASP B 129 OD1 158.2 104.9 92.4 REMARK 620 5 HOH B 310 O 69.5 95.3 77.9 88.8 REMARK 620 6 HOH B 314 O 106.0 85.5 99.9 95.6 175.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202 DBREF 6H6N A 12 131 UNP P0ADP7 UBIJ_ECOLI 1 120 DBREF 6H6N B 12 131 UNP P0ADP7 UBIJ_ECOLI 1 120 SEQADV 6H6N MET A 1 UNP P0ADP7 INITIATING METHIONINE SEQADV 6H6N GLU A 2 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N LEU A 3 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS A 4 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS A 5 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS A 6 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS A 7 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS A 8 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS A 9 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N GLU A 10 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N GLU A 11 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N MET B 1 UNP P0ADP7 INITIATING METHIONINE SEQADV 6H6N GLU B 2 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N LEU B 3 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS B 4 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS B 5 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS B 6 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS B 7 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS B 8 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N HIS B 9 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N GLU B 10 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6N GLU B 11 UNP P0ADP7 EXPRESSION TAG SEQRES 1 A 131 MET GLU LEU HIS HIS HIS HIS HIS HIS GLU GLU MET PRO SEQRES 2 A 131 PHE LYS PRO LEU VAL THR ALA GLY ILE GLU SER LEU LEU SEQRES 3 A 131 ASN THR PHE LEU TYR ARG SER PRO ALA LEU LYS THR ALA SEQRES 4 A 131 ARG SER ARG LEU LEU GLY LYS VAL LEU ARG VAL GLU VAL SEQRES 5 A 131 LYS GLY PHE SER THR SER LEU ILE LEU VAL PHE SER GLU SEQRES 6 A 131 ARG GLN VAL ASP VAL LEU GLY GLU TRP ALA GLY ASP ALA SEQRES 7 A 131 ASP CYS THR VAL ILE ALA TYR ALA SER VAL LEU PRO LYS SEQRES 8 A 131 LEU ARG ASP ARG GLN GLN LEU THR ALA LEU ILE ARG SER SEQRES 9 A 131 GLY GLU LEU GLU VAL GLN GLY ASP ILE GLN VAL VAL GLN SEQRES 10 A 131 ASN PHE VAL ALA LEU ALA ASP LEU ALA GLU PHE ASP PRO SEQRES 11 A 131 ALA SEQRES 1 B 131 MET GLU LEU HIS HIS HIS HIS HIS HIS GLU GLU MET PRO SEQRES 2 B 131 PHE LYS PRO LEU VAL THR ALA GLY ILE GLU SER LEU LEU SEQRES 3 B 131 ASN THR PHE LEU TYR ARG SER PRO ALA LEU LYS THR ALA SEQRES 4 B 131 ARG SER ARG LEU LEU GLY LYS VAL LEU ARG VAL GLU VAL SEQRES 5 B 131 LYS GLY PHE SER THR SER LEU ILE LEU VAL PHE SER GLU SEQRES 6 B 131 ARG GLN VAL ASP VAL LEU GLY GLU TRP ALA GLY ASP ALA SEQRES 7 B 131 ASP CYS THR VAL ILE ALA TYR ALA SER VAL LEU PRO LYS SEQRES 8 B 131 LEU ARG ASP ARG GLN GLN LEU THR ALA LEU ILE ARG SER SEQRES 9 B 131 GLY GLU LEU GLU VAL GLN GLY ASP ILE GLN VAL VAL GLN SEQRES 10 B 131 ASN PHE VAL ALA LEU ALA ASP LEU ALA GLU PHE ASP PRO SEQRES 11 B 131 ALA HET TB A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET TB B 201 1 HET CA B 202 1 HETNAM TB TERBIUM(III) ION HETNAM CA CALCIUM ION FORMUL 3 TB 2(TB 3+) FORMUL 4 CA 6(CA 2+) FORMUL 11 HOH *118(H2 O) HELIX 1 AA1 PRO A 13 ARG A 32 1 20 HELIX 2 AA2 SER A 33 ALA A 35 5 3 HELIX 3 AA3 LEU A 36 ARG A 42 1 7 HELIX 4 AA4 TYR A 85 LEU A 92 5 8 HELIX 5 AA5 ASP A 94 SER A 104 1 11 HELIX 6 AA6 ASP A 112 ASP A 129 1 18 HELIX 7 AA7 LYS B 15 ARG B 32 1 18 HELIX 8 AA8 SER B 33 ALA B 35 5 3 HELIX 9 AA9 LEU B 36 ARG B 42 1 7 HELIX 10 AB1 TYR B 85 GLN B 96 5 12 HELIX 11 AB2 GLN B 97 SER B 104 1 8 HELIX 12 AB3 ASP B 112 GLU B 127 1 16 SHEET 1 AA1 5 VAL A 68 LEU A 71 0 SHEET 2 AA1 5 LEU A 59 PHE A 63 -1 N ILE A 60 O LEU A 71 SHEET 3 AA1 5 VAL A 47 VAL A 52 -1 N VAL A 50 O LEU A 59 SHEET 4 AA1 5 CYS A 80 ALA A 84 1 O VAL A 82 N GLU A 51 SHEET 5 AA1 5 GLU A 108 GLY A 111 -1 O GLU A 108 N ILE A 83 SHEET 1 AA2 5 VAL B 68 LEU B 71 0 SHEET 2 AA2 5 LEU B 59 PHE B 63 -1 N ILE B 60 O LEU B 71 SHEET 3 AA2 5 VAL B 47 VAL B 52 -1 N VAL B 50 O LEU B 59 SHEET 4 AA2 5 CYS B 80 ALA B 84 1 O VAL B 82 N GLU B 51 SHEET 5 AA2 5 GLU B 108 GLY B 111 -1 O GLU B 108 N ILE B 83 LINK OE1 GLU A 23 CA CA A 205 1555 1555 2.58 LINK OE2 GLU A 23 CA CA A 205 1555 1555 2.48 LINK OE1 GLU A 51 TB TB A 201 1555 1555 3.42 LINK OE2 GLU A 51 TB TB A 201 1555 1555 3.37 LINK OD1 ASP A 69 CA CA A 205 1555 1555 2.61 LINK OD1 ASP A 77 CA CA A 203 1555 1555 2.45 LINK OD2 ASP A 77 CA CA A 203 1555 1555 2.70 LINK O ALA A 78 CA CA A 203 1555 1555 3.13 LINK OD1 ASP A 79 CA CA A 202 1555 1555 2.36 LINK OD2 ASP A 79 CA CA A 202 1555 1555 2.48 LINK OD1 ASP A 124 CA CA A 206 1555 1555 2.57 LINK O ALA A 126 CA CA A 204 1555 1555 2.31 LINK OE1 GLU A 127 CA CA A 206 1555 1555 2.57 LINK O ASP A 129 CA CA A 204 1555 1555 2.32 LINK O ALA A 131 CA CA A 204 1555 1555 2.50 LINK TB TB A 201 O HOH A 356 1555 1555 3.36 LINK CA CA A 202 O HOH A 304 1555 1555 2.23 LINK CA CA A 202 O HOH A 335 1555 1555 2.29 LINK CA CA A 202 OE1 GLU B 23 3645 1555 2.41 LINK CA CA A 202 OE2 GLU B 23 3645 1555 2.52 LINK CA CA A 202 OD1 ASP B 69 3645 1555 2.26 LINK CA CA A 203 O HOH A 327 1555 1555 2.29 LINK CA CA A 204 O HOH A 311 1555 1555 2.41 LINK CA CA A 204 O HOH A 320 1555 1555 2.38 LINK CA CA A 205 O HOH A 319 1555 1555 2.33 LINK CA CA A 205 O HOH A 333 1555 1555 2.17 LINK CA CA A 205 O HOH B 317 1555 2654 2.30 LINK CA CA A 205 O HOH B 345 1555 3655 2.40 LINK OE1 GLU B 73 TB TB B 201 1555 1555 2.45 LINK OE2 GLU B 73 TB TB B 201 1555 1555 2.41 LINK O ASP B 124 CA CA B 202 1555 1555 2.25 LINK OD1 ASP B 124 CA CA B 202 1555 1555 2.37 LINK O GLU B 127 CA CA B 202 1555 1555 2.37 LINK OD1 ASP B 129 CA CA B 202 1555 1555 2.47 LINK TB TB B 201 O HOH B 337 1555 1555 3.05 LINK TB TB B 201 O HOH B 340 1555 1555 2.66 LINK CA CA B 202 O HOH B 310 1555 1555 2.50 LINK CA CA B 202 O HOH B 314 1555 1555 2.15 SITE 1 AC1 1 GLU A 51 SITE 1 AC2 5 ASP A 79 HOH A 304 HOH A 335 GLU B 23 SITE 2 AC2 5 ASP B 69 SITE 1 AC3 3 ASP A 77 ALA A 78 HOH A 327 SITE 1 AC4 5 ALA A 126 ASP A 129 ALA A 131 HOH A 311 SITE 2 AC4 5 HOH A 320 SITE 1 AC5 6 GLU A 23 ASP A 69 HOH A 319 HOH A 333 SITE 2 AC5 6 HOH B 317 HOH B 345 SITE 1 AC6 4 ARG A 93 ASP A 94 ASP A 124 GLU A 127 SITE 1 AC7 3 GLU B 73 HOH B 337 HOH B 340 SITE 1 AC8 5 ASP B 124 GLU B 127 ASP B 129 HOH B 310 SITE 2 AC8 5 HOH B 314 CRYST1 48.300 67.930 73.080 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013684 0.00000