HEADER LIPID BINDING PROTEIN 28-JUL-18 6H6O
TITLE UBIJ-SCP2 UBIQUINONE SYNTHESIS PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UBIQUINONE BIOSYNTHESIS PROTEIN UBIJ;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12);
SOURCE 3 ORGANISM_TAXID: 83333;
SOURCE 4 STRAIN: K12;
SOURCE 5 GENE: UBIJ, YIGP, B3834, JW3811;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS SCP2 LIPID BINDING PROTEIN UBIQUINONE SYNTHESIS PROTEIN, LIPID
KEYWDS 2 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.D.FYFE,P.LEGRAND,L.PECQUEUR,L.CICCONE,M.LOMBARD,M.FONTECAVE
REVDAT 3 17-JAN-24 6H6O 1 LINK
REVDAT 2 01-MAY-19 6H6O 1 JRNL
REVDAT 1 13-FEB-19 6H6O 0
JRNL AUTH M.HAJJ CHEHADE,L.PELOSI,C.D.FYFE,L.LOISEAU,B.RASCALOU,
JRNL AUTH 2 S.BRUGIERE,K.KAZEMZADEH,C.D.VO,L.CICCONE,L.AUSSEL,Y.COUTE,
JRNL AUTH 3 M.FONTECAVE,F.BARRAS,M.LOMBARD,F.PIERREL
JRNL TITL A SOLUBLE METABOLON SYNTHESIZES THE ISOPRENOID LIPID
JRNL TITL 2 UBIQUINONE.
JRNL REF CELL CHEM BIOL V. 26 482 2019
JRNL REFN ESSN 2451-9456
JRNL PMID 30686758
JRNL DOI 10.1016/J.CHEMBIOL.2018.12.001
REMARK 2
REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5
REMARK 3 NUMBER OF REFLECTIONS : 24371
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.204
REMARK 3 R VALUE (WORKING SET) : 0.202
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.070
REMARK 3 FREE R VALUE TEST SET COUNT : 1722
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 12
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.78
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.72
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1970
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2400
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1834
REMARK 3 BIN R VALUE (WORKING SET) : 0.2380
REMARK 3 BIN FREE R VALUE : 0.2700
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.90
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1834
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 46
REMARK 3 SOLVENT ATOMS : 185
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 26.50
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.16
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.84730
REMARK 3 B22 (A**2) : -0.49830
REMARK 3 B33 (A**2) : 1.34560
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.136
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.118
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.130
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.115
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1953 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2678 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 695 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 46 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 281 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1953 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 252 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2294 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.98
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.91
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.48
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -18.9734 5.1487 -25.5014
REMARK 3 T TENSOR
REMARK 3 T11: -0.0570 T22: -0.0512
REMARK 3 T33: -0.0111 T12: -0.0042
REMARK 3 T13: -0.0186 T23: -0.0232
REMARK 3 L TENSOR
REMARK 3 L11: 1.6218 L22: 0.8275
REMARK 3 L33: 0.8166 L12: -0.1746
REMARK 3 L13: 0.1168 L23: -0.0834
REMARK 3 S TENSOR
REMARK 3 S11: -0.0026 S12: 0.1073 S13: -0.0947
REMARK 3 S21: -0.0521 S22: 0.0037 S23: 0.1073
REMARK 3 S31: 0.0639 S32: 0.0487 S33: -0.0011
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -41.6259 -8.8007 -26.4142
REMARK 3 T TENSOR
REMARK 3 T11: -0.0743 T22: -0.0763
REMARK 3 T33: -0.0224 T12: -0.0061
REMARK 3 T13: -0.0006 T23: 0.0070
REMARK 3 L TENSOR
REMARK 3 L11: 1.7804 L22: 1.9221
REMARK 3 L33: 1.3632 L12: -0.1662
REMARK 3 L13: -0.1402 L23: 0.0777
REMARK 3 S TENSOR
REMARK 3 S11: -0.0612 S12: 0.1689 S13: -0.0616
REMARK 3 S21: -0.1951 S22: 0.0611 S23: 0.0333
REMARK 3 S31: -0.0331 S32: -0.0605 S33: 0.0001
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6H6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-18.
REMARK 100 THE DEPOSITION ID IS D_1200011165.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-APR-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 9
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 177660
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700
REMARK 200 RESOLUTION RANGE LOW (A) : 39.550
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 6.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6H6N
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 225 MM CALCIUM CHLORIDE, 100 MM MMT
REMARK 280 BUFFER PH 9, 11% W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.33000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.30350
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.93500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.30350
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.33000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.93500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13200 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 GLU A 2
REMARK 465 LEU A 3
REMARK 465 HIS A 4
REMARK 465 HIS A 5
REMARK 465 HIS A 6
REMARK 465 HIS A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 GLU A 10
REMARK 465 MET B 1
REMARK 465 GLU B 2
REMARK 465 LEU B 3
REMARK 465 HIS B 4
REMARK 465 HIS B 5
REMARK 465 HIS B 6
REMARK 465 HIS B 7
REMARK 465 HIS B 8
REMARK 465 HIS B 9
REMARK 465 GLU B 10
REMARK 465 GLU B 11
REMARK 465 MET B 12
REMARK 465 PRO B 13
REMARK 465 PRO B 130
REMARK 465 ALA B 131
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS B 15 CG CD CE NZ
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 207 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 23 OE1
REMARK 620 2 GLU A 23 OE2 55.4
REMARK 620 3 ASP A 69 OD1 97.2 89.1
REMARK 620 4 HOH A 314 O 127.5 72.1 81.4
REMARK 620 5 HOH A 349 O 76.6 132.0 99.0 155.8
REMARK 620 6 HOH A 373 O 82.5 85.2 173.3 93.3 87.5
REMARK 620 7 HOH A 392 O 148.4 155.0 93.0 83.6 72.2 90.6
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 208 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 77 OD1
REMARK 620 2 ASP A 77 OD2 52.6
REMARK 620 3 HOH A 396 O 117.9 81.1
REMARK 620 4 HOH A 399 O 166.4 131.3 75.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 204 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 79 OD1
REMARK 620 2 ASP A 79 OD2 51.9
REMARK 620 3 HOH A 306 O 145.0 93.2
REMARK 620 4 HOH A 342 O 90.1 87.8 88.2
REMARK 620 5 GLU B 23 OE1 90.7 40.1 55.0 76.5
REMARK 620 6 GLU B 23 OE2 94.1 43.4 51.7 76.3 3.4
REMARK 620 7 ASP B 69 OD1 92.4 41.7 53.4 76.5 1.7 1.7
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 206 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ARG A 93 O
REMARK 620 2 ASP A 124 OD1 83.1
REMARK 620 3 GLU A 127 OE1 152.0 106.2
REMARK 620 4 HOH A 355 O 126.5 66.2 80.7
REMARK 620 5 HOH A 362 O 69.7 100.7 82.6 154.6
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 205 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ALA A 126 O
REMARK 620 2 ASP A 129 O 87.6
REMARK 620 3 ALA A 131 O 169.7 92.7
REMARK 620 4 HOH A 313 O 94.2 172.9 84.3
REMARK 620 5 HOH A 326 O 92.4 91.5 77.3 81.6
REMARK 620 6 HOH A 384 O 89.9 89.0 100.4 97.9 177.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 203 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH A 371 O
REMARK 620 2 ASP B 124 O 81.1
REMARK 620 3 ASP B 124 OD1 90.6 82.0
REMARK 620 4 GLU B 127 O 81.7 81.2 162.4
REMARK 620 5 ASP B 129 OD1 88.6 168.9 102.5 93.1
REMARK 620 6 HOH B 315 O 173.2 103.9 85.5 103.5 86.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 204 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ARG B 42 O
REMARK 620 2 HOH B 337 O 115.7
REMARK 620 3 HOH B 338 O 65.1 178.0
REMARK 620 4 HOH B 374 O 101.9 82.1 95.9
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 208
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 204
DBREF 6H6O A 12 131 UNP P0ADP7 UBIJ_ECOLI 1 120
DBREF 6H6O B 12 131 UNP P0ADP7 UBIJ_ECOLI 1 120
SEQADV 6H6O MET A 1 UNP P0ADP7 INITIATING METHIONINE
SEQADV 6H6O GLU A 2 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O LEU A 3 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS A 4 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS A 5 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS A 6 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS A 7 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS A 8 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS A 9 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O GLU A 10 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O GLU A 11 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O MET B 1 UNP P0ADP7 INITIATING METHIONINE
SEQADV 6H6O GLU B 2 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O LEU B 3 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS B 4 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS B 5 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS B 6 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS B 7 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS B 8 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O HIS B 9 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O GLU B 10 UNP P0ADP7 EXPRESSION TAG
SEQADV 6H6O GLU B 11 UNP P0ADP7 EXPRESSION TAG
SEQRES 1 A 131 MET GLU LEU HIS HIS HIS HIS HIS HIS GLU GLU MET PRO
SEQRES 2 A 131 PHE LYS PRO LEU VAL THR ALA GLY ILE GLU SER LEU LEU
SEQRES 3 A 131 ASN THR PHE LEU TYR ARG SER PRO ALA LEU LYS THR ALA
SEQRES 4 A 131 ARG SER ARG LEU LEU GLY LYS VAL LEU ARG VAL GLU VAL
SEQRES 5 A 131 LYS GLY PHE SER THR SER LEU ILE LEU VAL PHE SER GLU
SEQRES 6 A 131 ARG GLN VAL ASP VAL LEU GLY GLU TRP ALA GLY ASP ALA
SEQRES 7 A 131 ASP CYS THR VAL ILE ALA TYR ALA SER VAL LEU PRO LYS
SEQRES 8 A 131 LEU ARG ASP ARG GLN GLN LEU THR ALA LEU ILE ARG SER
SEQRES 9 A 131 GLY GLU LEU GLU VAL GLN GLY ASP ILE GLN VAL VAL GLN
SEQRES 10 A 131 ASN PHE VAL ALA LEU ALA ASP LEU ALA GLU PHE ASP PRO
SEQRES 11 A 131 ALA
SEQRES 1 B 131 MET GLU LEU HIS HIS HIS HIS HIS HIS GLU GLU MET PRO
SEQRES 2 B 131 PHE LYS PRO LEU VAL THR ALA GLY ILE GLU SER LEU LEU
SEQRES 3 B 131 ASN THR PHE LEU TYR ARG SER PRO ALA LEU LYS THR ALA
SEQRES 4 B 131 ARG SER ARG LEU LEU GLY LYS VAL LEU ARG VAL GLU VAL
SEQRES 5 B 131 LYS GLY PHE SER THR SER LEU ILE LEU VAL PHE SER GLU
SEQRES 6 B 131 ARG GLN VAL ASP VAL LEU GLY GLU TRP ALA GLY ASP ALA
SEQRES 7 B 131 ASP CYS THR VAL ILE ALA TYR ALA SER VAL LEU PRO LYS
SEQRES 8 B 131 LEU ARG ASP ARG GLN GLN LEU THR ALA LEU ILE ARG SER
SEQRES 9 B 131 GLY GLU LEU GLU VAL GLN GLY ASP ILE GLN VAL VAL GLN
SEQRES 10 B 131 ASN PHE VAL ALA LEU ALA ASP LEU ALA GLU PHE ASP PRO
SEQRES 11 B 131 ALA
HET LMR A 201 13
HET PEG A 202 17
HET LMR A 203 13
HET CA A 204 1
HET CA A 205 1
HET CA A 206 1
HET CA A 207 1
HET CA A 208 1
HET PEG B 201 17
HET PEG B 202 17
HET CA B 203 1
HET CA B 204 1
HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETNAM CA CALCIUM ION
HETSYN LMR L-MALATE
FORMUL 3 LMR 2(C4 H6 O5)
FORMUL 4 PEG 3(C4 H10 O3)
FORMUL 6 CA 7(CA 2+)
FORMUL 15 HOH *185(H2 O)
HELIX 1 AA1 PRO A 13 TYR A 31 1 19
HELIX 2 AA2 SER A 33 ALA A 35 5 3
HELIX 3 AA3 LEU A 36 ARG A 42 1 7
HELIX 4 AA4 ALA A 86 LEU A 92 5 7
HELIX 5 AA5 ASP A 94 SER A 104 1 11
HELIX 6 AA6 ASP A 112 ASP A 129 1 18
HELIX 7 AA7 LYS B 15 TYR B 31 1 17
HELIX 8 AA8 SER B 33 ALA B 35 5 3
HELIX 9 AA9 LEU B 36 ARG B 42 1 7
HELIX 10 AB1 TYR B 85 LEU B 92 5 8
HELIX 11 AB2 ASP B 94 SER B 104 1 11
HELIX 12 AB3 ASP B 112 ALA B 126 1 15
SHEET 1 AA1 5 VAL A 68 LEU A 71 0
SHEET 2 AA1 5 SER A 58 PHE A 63 -1 N VAL A 62 O ASP A 69
SHEET 3 AA1 5 VAL A 47 VAL A 52 -1 N VAL A 50 O LEU A 59
SHEET 4 AA1 5 CYS A 80 ALA A 84 1 O VAL A 82 N GLU A 51
SHEET 5 AA1 5 LEU A 107 GLY A 111 -1 O GLN A 110 N THR A 81
SHEET 1 AA2 5 VAL B 68 LEU B 71 0
SHEET 2 AA2 5 SER B 58 PHE B 63 -1 N VAL B 62 O ASP B 69
SHEET 3 AA2 5 VAL B 47 VAL B 52 -1 N VAL B 50 O LEU B 59
SHEET 4 AA2 5 CYS B 80 ALA B 84 1 O VAL B 82 N GLU B 51
SHEET 5 AA2 5 GLU B 108 GLY B 111 -1 O GLN B 110 N THR B 81
LINK OE1 GLU A 23 CA CA A 207 1555 1555 2.34
LINK OE2 GLU A 23 CA CA A 207 1555 1555 2.40
LINK OD1 ASP A 69 CA CA A 207 1555 1555 2.48
LINK OD1AASP A 77 CA CA A 208 1555 1555 2.27
LINK OD2AASP A 77 CA CA A 208 1555 1555 2.65
LINK OD1 ASP A 79 CA CA A 204 1555 1555 2.41
LINK OD2 ASP A 79 CA CA A 204 1555 1555 2.56
LINK O ARG A 93 CA CA A 206 1555 1555 2.51
LINK OD1 ASP A 124 CA CA A 206 1555 1555 2.67
LINK O ALA A 126 CA CA A 205 1555 1555 2.23
LINK OE1 GLU A 127 CA CA A 206 1555 1555 2.85
LINK O ASP A 129 CA CA A 205 1555 1555 2.33
LINK O ALA A 131 CA CA A 205 1555 1555 2.57
LINK CA CA A 204 O HOH A 306 1555 1555 2.29
LINK CA CA A 204 O HOH A 342 1555 1555 2.35
LINK CA CA A 204 OE1 GLU B 23 3444 1555 2.48
LINK CA CA A 204 OE2 GLU B 23 3444 1555 2.45
LINK CA CA A 204 OD1 ASP B 69 3444 1555 2.27
LINK CA CA A 205 O HOH A 313 1555 1555 2.39
LINK CA CA A 205 O HOH A 326 1555 1555 2.34
LINK CA CA A 205 O HOH A 384 1555 1555 2.30
LINK CA CA A 206 O HOH A 355 1555 1555 2.57
LINK CA CA A 206 O HOH A 362 1555 1555 2.59
LINK CA CA A 207 O HOH A 314 1555 1555 2.20
LINK CA CA A 207 O HOH A 349 1555 1555 2.43
LINK CA CA A 207 O HOH A 373 1555 1555 2.24
LINK CA CA A 207 O HOH A 392 1555 1555 2.38
LINK CA CA A 208 O HOH A 396 1555 1555 3.16
LINK CA CA A 208 O HOH A 399 1555 3454 2.48
LINK O HOH A 371 CA CA B 203 1455 1555 2.50
LINK O ARG B 42 CA CA B 204 1555 1555 3.01
LINK O ASP B 124 CA CA B 203 1555 1555 2.32
LINK OD1 ASP B 124 CA CA B 203 1555 1555 2.40
LINK O GLU B 127 CA CA B 203 1555 1555 2.33
LINK OD1 ASP B 129 CA CA B 203 1555 1555 2.52
LINK CA CA B 203 O HOH B 315 1555 1555 2.34
LINK CA CA B 204 O HOH B 337 1555 1555 2.51
LINK CA CA B 204 O HOH B 338 1555 1555 2.94
LINK CA CA B 204 O HOH B 374 1555 1555 2.66
SITE 1 AC1 2 TYR A 85 ARG B 32
SITE 1 AC2 7 LYS A 53 ILE A 83 TYR A 85 GLY A 105
SITE 2 AC2 7 GLU A 108 HOH A 310 HOH A 370
SITE 1 AC3 11 ASP A 77 ALA A 78 ASP A 79 GLY A 111
SITE 2 AC3 11 ASP A 112 HOH A 311 HOH A 332 GLU B 23
SITE 3 AC3 11 ARG B 66 GLN B 67 PEG B 201
SITE 1 AC4 5 ASP A 79 HOH A 306 HOH A 342 GLU B 23
SITE 2 AC4 5 ASP B 69
SITE 1 AC5 6 ALA A 126 ASP A 129 ALA A 131 HOH A 313
SITE 2 AC5 6 HOH A 326 HOH A 384
SITE 1 AC6 5 ARG A 93 ASP A 124 GLU A 127 HOH A 355
SITE 2 AC6 5 HOH A 362
SITE 1 AC7 6 GLU A 23 ASP A 69 HOH A 314 HOH A 349
SITE 2 AC7 6 HOH A 373 HOH A 392
SITE 1 AC8 2 ASP A 77 HOH A 399
SITE 1 AC9 6 LMR A 203 ASN B 27 THR B 28 ARG B 32
SITE 2 AC9 6 ARG B 66 GLN B 67
SITE 1 AD1 6 GLU A 65 ASP B 77 ALA B 78 ASP B 79
SITE 2 AD1 6 HOH B 314 HOH B 330
SITE 1 AD2 5 HOH A 371 ASP B 124 GLU B 127 ASP B 129
SITE 2 AD2 5 HOH B 315
SITE 1 AD3 4 ARG B 42 HOH B 337 HOH B 338 HOH B 374
CRYST1 48.660 67.870 74.607 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020551 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014734 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013404 0.00000