HEADER LIPID BINDING PROTEIN 28-JUL-18 6H6O TITLE UBIJ-SCP2 UBIQUINONE SYNTHESIS PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUINONE BIOSYNTHESIS PROTEIN UBIJ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: UBIJ, YIGP, B3834, JW3811; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SCP2 LIPID BINDING PROTEIN UBIQUINONE SYNTHESIS PROTEIN, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.D.FYFE,P.LEGRAND,L.PECQUEUR,L.CICCONE,M.LOMBARD,M.FONTECAVE REVDAT 3 17-JAN-24 6H6O 1 LINK REVDAT 2 01-MAY-19 6H6O 1 JRNL REVDAT 1 13-FEB-19 6H6O 0 JRNL AUTH M.HAJJ CHEHADE,L.PELOSI,C.D.FYFE,L.LOISEAU,B.RASCALOU, JRNL AUTH 2 S.BRUGIERE,K.KAZEMZADEH,C.D.VO,L.CICCONE,L.AUSSEL,Y.COUTE, JRNL AUTH 3 M.FONTECAVE,F.BARRAS,M.LOMBARD,F.PIERREL JRNL TITL A SOLUBLE METABOLON SYNTHESIZES THE ISOPRENOID LIPID JRNL TITL 2 UBIQUINONE. JRNL REF CELL CHEM BIOL V. 26 482 2019 JRNL REFN ESSN 2451-9456 JRNL PMID 30686758 JRNL DOI 10.1016/J.CHEMBIOL.2018.12.001 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 24371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.72 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1970 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2400 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1834 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84730 REMARK 3 B22 (A**2) : -0.49830 REMARK 3 B33 (A**2) : 1.34560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.136 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.118 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.130 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1953 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2678 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 695 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 46 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 281 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1953 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 252 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2294 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.91 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.48 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -18.9734 5.1487 -25.5014 REMARK 3 T TENSOR REMARK 3 T11: -0.0570 T22: -0.0512 REMARK 3 T33: -0.0111 T12: -0.0042 REMARK 3 T13: -0.0186 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.6218 L22: 0.8275 REMARK 3 L33: 0.8166 L12: -0.1746 REMARK 3 L13: 0.1168 L23: -0.0834 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.1073 S13: -0.0947 REMARK 3 S21: -0.0521 S22: 0.0037 S23: 0.1073 REMARK 3 S31: 0.0639 S32: 0.0487 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -41.6259 -8.8007 -26.4142 REMARK 3 T TENSOR REMARK 3 T11: -0.0743 T22: -0.0763 REMARK 3 T33: -0.0224 T12: -0.0061 REMARK 3 T13: -0.0006 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.7804 L22: 1.9221 REMARK 3 L33: 1.3632 L12: -0.1662 REMARK 3 L13: -0.1402 L23: 0.0777 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: 0.1689 S13: -0.0616 REMARK 3 S21: -0.1951 S22: 0.0611 S23: 0.0333 REMARK 3 S31: -0.0331 S32: -0.0605 S33: 0.0001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 177660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 225 MM CALCIUM CHLORIDE, 100 MM MMT REMARK 280 BUFFER PH 9, 11% W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.30350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.30350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 11 REMARK 465 MET B 12 REMARK 465 PRO B 13 REMARK 465 PRO B 130 REMARK 465 ALA B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 15 CG CD CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 23 OE1 REMARK 620 2 GLU A 23 OE2 55.4 REMARK 620 3 ASP A 69 OD1 97.2 89.1 REMARK 620 4 HOH A 314 O 127.5 72.1 81.4 REMARK 620 5 HOH A 349 O 76.6 132.0 99.0 155.8 REMARK 620 6 HOH A 373 O 82.5 85.2 173.3 93.3 87.5 REMARK 620 7 HOH A 392 O 148.4 155.0 93.0 83.6 72.2 90.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 208 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 77 OD1 REMARK 620 2 ASP A 77 OD2 52.6 REMARK 620 3 HOH A 396 O 117.9 81.1 REMARK 620 4 HOH A 399 O 166.4 131.3 75.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD1 REMARK 620 2 ASP A 79 OD2 51.9 REMARK 620 3 HOH A 306 O 145.0 93.2 REMARK 620 4 HOH A 342 O 90.1 87.8 88.2 REMARK 620 5 GLU B 23 OE1 90.7 40.1 55.0 76.5 REMARK 620 6 GLU B 23 OE2 94.1 43.4 51.7 76.3 3.4 REMARK 620 7 ASP B 69 OD1 92.4 41.7 53.4 76.5 1.7 1.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 93 O REMARK 620 2 ASP A 124 OD1 83.1 REMARK 620 3 GLU A 127 OE1 152.0 106.2 REMARK 620 4 HOH A 355 O 126.5 66.2 80.7 REMARK 620 5 HOH A 362 O 69.7 100.7 82.6 154.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 126 O REMARK 620 2 ASP A 129 O 87.6 REMARK 620 3 ALA A 131 O 169.7 92.7 REMARK 620 4 HOH A 313 O 94.2 172.9 84.3 REMARK 620 5 HOH A 326 O 92.4 91.5 77.3 81.6 REMARK 620 6 HOH A 384 O 89.9 89.0 100.4 97.9 177.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 371 O REMARK 620 2 ASP B 124 O 81.1 REMARK 620 3 ASP B 124 OD1 90.6 82.0 REMARK 620 4 GLU B 127 O 81.7 81.2 162.4 REMARK 620 5 ASP B 129 OD1 88.6 168.9 102.5 93.1 REMARK 620 6 HOH B 315 O 173.2 103.9 85.5 103.5 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 42 O REMARK 620 2 HOH B 337 O 115.7 REMARK 620 3 HOH B 338 O 65.1 178.0 REMARK 620 4 HOH B 374 O 101.9 82.1 95.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 204 DBREF 6H6O A 12 131 UNP P0ADP7 UBIJ_ECOLI 1 120 DBREF 6H6O B 12 131 UNP P0ADP7 UBIJ_ECOLI 1 120 SEQADV 6H6O MET A 1 UNP P0ADP7 INITIATING METHIONINE SEQADV 6H6O GLU A 2 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O LEU A 3 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS A 4 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS A 5 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS A 6 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS A 7 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS A 8 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS A 9 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O GLU A 10 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O GLU A 11 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O MET B 1 UNP P0ADP7 INITIATING METHIONINE SEQADV 6H6O GLU B 2 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O LEU B 3 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS B 4 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS B 5 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS B 6 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS B 7 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS B 8 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O HIS B 9 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O GLU B 10 UNP P0ADP7 EXPRESSION TAG SEQADV 6H6O GLU B 11 UNP P0ADP7 EXPRESSION TAG SEQRES 1 A 131 MET GLU LEU HIS HIS HIS HIS HIS HIS GLU GLU MET PRO SEQRES 2 A 131 PHE LYS PRO LEU VAL THR ALA GLY ILE GLU SER LEU LEU SEQRES 3 A 131 ASN THR PHE LEU TYR ARG SER PRO ALA LEU LYS THR ALA SEQRES 4 A 131 ARG SER ARG LEU LEU GLY LYS VAL LEU ARG VAL GLU VAL SEQRES 5 A 131 LYS GLY PHE SER THR SER LEU ILE LEU VAL PHE SER GLU SEQRES 6 A 131 ARG GLN VAL ASP VAL LEU GLY GLU TRP ALA GLY ASP ALA SEQRES 7 A 131 ASP CYS THR VAL ILE ALA TYR ALA SER VAL LEU PRO LYS SEQRES 8 A 131 LEU ARG ASP ARG GLN GLN LEU THR ALA LEU ILE ARG SER SEQRES 9 A 131 GLY GLU LEU GLU VAL GLN GLY ASP ILE GLN VAL VAL GLN SEQRES 10 A 131 ASN PHE VAL ALA LEU ALA ASP LEU ALA GLU PHE ASP PRO SEQRES 11 A 131 ALA SEQRES 1 B 131 MET GLU LEU HIS HIS HIS HIS HIS HIS GLU GLU MET PRO SEQRES 2 B 131 PHE LYS PRO LEU VAL THR ALA GLY ILE GLU SER LEU LEU SEQRES 3 B 131 ASN THR PHE LEU TYR ARG SER PRO ALA LEU LYS THR ALA SEQRES 4 B 131 ARG SER ARG LEU LEU GLY LYS VAL LEU ARG VAL GLU VAL SEQRES 5 B 131 LYS GLY PHE SER THR SER LEU ILE LEU VAL PHE SER GLU SEQRES 6 B 131 ARG GLN VAL ASP VAL LEU GLY GLU TRP ALA GLY ASP ALA SEQRES 7 B 131 ASP CYS THR VAL ILE ALA TYR ALA SER VAL LEU PRO LYS SEQRES 8 B 131 LEU ARG ASP ARG GLN GLN LEU THR ALA LEU ILE ARG SER SEQRES 9 B 131 GLY GLU LEU GLU VAL GLN GLY ASP ILE GLN VAL VAL GLN SEQRES 10 B 131 ASN PHE VAL ALA LEU ALA ASP LEU ALA GLU PHE ASP PRO SEQRES 11 B 131 ALA HET LMR A 201 13 HET PEG A 202 17 HET LMR A 203 13 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET CA A 207 1 HET CA A 208 1 HET PEG B 201 17 HET PEG B 202 17 HET CA B 203 1 HET CA B 204 1 HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CA CALCIUM ION HETSYN LMR L-MALATE FORMUL 3 LMR 2(C4 H6 O5) FORMUL 4 PEG 3(C4 H10 O3) FORMUL 6 CA 7(CA 2+) FORMUL 15 HOH *185(H2 O) HELIX 1 AA1 PRO A 13 TYR A 31 1 19 HELIX 2 AA2 SER A 33 ALA A 35 5 3 HELIX 3 AA3 LEU A 36 ARG A 42 1 7 HELIX 4 AA4 ALA A 86 LEU A 92 5 7 HELIX 5 AA5 ASP A 94 SER A 104 1 11 HELIX 6 AA6 ASP A 112 ASP A 129 1 18 HELIX 7 AA7 LYS B 15 TYR B 31 1 17 HELIX 8 AA8 SER B 33 ALA B 35 5 3 HELIX 9 AA9 LEU B 36 ARG B 42 1 7 HELIX 10 AB1 TYR B 85 LEU B 92 5 8 HELIX 11 AB2 ASP B 94 SER B 104 1 11 HELIX 12 AB3 ASP B 112 ALA B 126 1 15 SHEET 1 AA1 5 VAL A 68 LEU A 71 0 SHEET 2 AA1 5 SER A 58 PHE A 63 -1 N VAL A 62 O ASP A 69 SHEET 3 AA1 5 VAL A 47 VAL A 52 -1 N VAL A 50 O LEU A 59 SHEET 4 AA1 5 CYS A 80 ALA A 84 1 O VAL A 82 N GLU A 51 SHEET 5 AA1 5 LEU A 107 GLY A 111 -1 O GLN A 110 N THR A 81 SHEET 1 AA2 5 VAL B 68 LEU B 71 0 SHEET 2 AA2 5 SER B 58 PHE B 63 -1 N VAL B 62 O ASP B 69 SHEET 3 AA2 5 VAL B 47 VAL B 52 -1 N VAL B 50 O LEU B 59 SHEET 4 AA2 5 CYS B 80 ALA B 84 1 O VAL B 82 N GLU B 51 SHEET 5 AA2 5 GLU B 108 GLY B 111 -1 O GLN B 110 N THR B 81 LINK OE1 GLU A 23 CA CA A 207 1555 1555 2.34 LINK OE2 GLU A 23 CA CA A 207 1555 1555 2.40 LINK OD1 ASP A 69 CA CA A 207 1555 1555 2.48 LINK OD1AASP A 77 CA CA A 208 1555 1555 2.27 LINK OD2AASP A 77 CA CA A 208 1555 1555 2.65 LINK OD1 ASP A 79 CA CA A 204 1555 1555 2.41 LINK OD2 ASP A 79 CA CA A 204 1555 1555 2.56 LINK O ARG A 93 CA CA A 206 1555 1555 2.51 LINK OD1 ASP A 124 CA CA A 206 1555 1555 2.67 LINK O ALA A 126 CA CA A 205 1555 1555 2.23 LINK OE1 GLU A 127 CA CA A 206 1555 1555 2.85 LINK O ASP A 129 CA CA A 205 1555 1555 2.33 LINK O ALA A 131 CA CA A 205 1555 1555 2.57 LINK CA CA A 204 O HOH A 306 1555 1555 2.29 LINK CA CA A 204 O HOH A 342 1555 1555 2.35 LINK CA CA A 204 OE1 GLU B 23 3444 1555 2.48 LINK CA CA A 204 OE2 GLU B 23 3444 1555 2.45 LINK CA CA A 204 OD1 ASP B 69 3444 1555 2.27 LINK CA CA A 205 O HOH A 313 1555 1555 2.39 LINK CA CA A 205 O HOH A 326 1555 1555 2.34 LINK CA CA A 205 O HOH A 384 1555 1555 2.30 LINK CA CA A 206 O HOH A 355 1555 1555 2.57 LINK CA CA A 206 O HOH A 362 1555 1555 2.59 LINK CA CA A 207 O HOH A 314 1555 1555 2.20 LINK CA CA A 207 O HOH A 349 1555 1555 2.43 LINK CA CA A 207 O HOH A 373 1555 1555 2.24 LINK CA CA A 207 O HOH A 392 1555 1555 2.38 LINK CA CA A 208 O HOH A 396 1555 1555 3.16 LINK CA CA A 208 O HOH A 399 1555 3454 2.48 LINK O HOH A 371 CA CA B 203 1455 1555 2.50 LINK O ARG B 42 CA CA B 204 1555 1555 3.01 LINK O ASP B 124 CA CA B 203 1555 1555 2.32 LINK OD1 ASP B 124 CA CA B 203 1555 1555 2.40 LINK O GLU B 127 CA CA B 203 1555 1555 2.33 LINK OD1 ASP B 129 CA CA B 203 1555 1555 2.52 LINK CA CA B 203 O HOH B 315 1555 1555 2.34 LINK CA CA B 204 O HOH B 337 1555 1555 2.51 LINK CA CA B 204 O HOH B 338 1555 1555 2.94 LINK CA CA B 204 O HOH B 374 1555 1555 2.66 SITE 1 AC1 2 TYR A 85 ARG B 32 SITE 1 AC2 7 LYS A 53 ILE A 83 TYR A 85 GLY A 105 SITE 2 AC2 7 GLU A 108 HOH A 310 HOH A 370 SITE 1 AC3 11 ASP A 77 ALA A 78 ASP A 79 GLY A 111 SITE 2 AC3 11 ASP A 112 HOH A 311 HOH A 332 GLU B 23 SITE 3 AC3 11 ARG B 66 GLN B 67 PEG B 201 SITE 1 AC4 5 ASP A 79 HOH A 306 HOH A 342 GLU B 23 SITE 2 AC4 5 ASP B 69 SITE 1 AC5 6 ALA A 126 ASP A 129 ALA A 131 HOH A 313 SITE 2 AC5 6 HOH A 326 HOH A 384 SITE 1 AC6 5 ARG A 93 ASP A 124 GLU A 127 HOH A 355 SITE 2 AC6 5 HOH A 362 SITE 1 AC7 6 GLU A 23 ASP A 69 HOH A 314 HOH A 349 SITE 2 AC7 6 HOH A 373 HOH A 392 SITE 1 AC8 2 ASP A 77 HOH A 399 SITE 1 AC9 6 LMR A 203 ASN B 27 THR B 28 ARG B 32 SITE 2 AC9 6 ARG B 66 GLN B 67 SITE 1 AD1 6 GLU A 65 ASP B 77 ALA B 78 ASP B 79 SITE 2 AD1 6 HOH B 314 HOH B 330 SITE 1 AD2 5 HOH A 371 ASP B 124 GLU B 127 ASP B 129 SITE 2 AD2 5 HOH B 315 SITE 1 AD3 4 ARG B 42 HOH B 337 HOH B 338 HOH B 374 CRYST1 48.660 67.870 74.607 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013404 0.00000