data_6H86 # _entry.id 6H86 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.311 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6H86 WWPDB D_1200011040 # _pdbx_database_related.db_name PDB _pdbx_database_related.details '4R3Q provides the original experimental data from which this entry was re-built and re-refined' _pdbx_database_related.db_id 4R3Q _pdbx_database_related.content_type re-refinement # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6H86 _pdbx_database_status.recvd_initial_deposition_date 2018-08-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Davies, O.R.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Biol.Chem. JBCHA3 0071 1083-351X ? ? 294 ? 9260 9275 'A molecular model for self-assembly of the synaptonemal complex protein SYCE3.' 2019 ? 10.1074/jbc.RA119.008404 31023827 ? ? ? ? ? ? ? ? UK ? ? 1 'Sci Rep' ? ? 2045-2322 ? ? 4 ? 7059 ? 'Structural insight into the central element assembly of the synaptonemal complex.' 2014 ? 10.1038/srep07059 25394919 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dunne, O.M.' 1 ? primary 'Davies, O.R.' 2 ? 1 'Lu, J.' 3 ? 1 'Gu, Y.' 4 ? 1 'Feng, J.' 5 ? 1 'Zhou, W.' 6 ? 1 'Yang, X.' 7 ? 1 'Shen, Y.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6H86 _cell.details ? _cell.formula_units_Z ? _cell.length_a 75.576 _cell.length_a_esd ? _cell.length_b 75.576 _cell.length_b_esd ? _cell.length_c 101.511 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6H86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Synaptonemal complex central element protein 3' 10480.013 2 ? ? ? ? 2 water nat water 18.015 73 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Testis-specific expressed protein 2,TSEG-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MADSDPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQEL LTETKRKQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MADSDPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQEL LTETKRKQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASP n 1 4 SER n 1 5 ASP n 1 6 PRO n 1 7 GLY n 1 8 GLU n 1 9 ARG n 1 10 SER n 1 11 TYR n 1 12 ASP n 1 13 ASN n 1 14 MET n 1 15 LEU n 1 16 LYS n 1 17 MET n 1 18 LEU n 1 19 SER n 1 20 ASP n 1 21 LEU n 1 22 ASN n 1 23 LYS n 1 24 ASP n 1 25 LEU n 1 26 GLU n 1 27 LYS n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 GLU n 1 32 MET n 1 33 GLU n 1 34 LYS n 1 35 ILE n 1 36 SER n 1 37 VAL n 1 38 GLN n 1 39 ALA n 1 40 THR n 1 41 TRP n 1 42 MET n 1 43 ALA n 1 44 TYR n 1 45 ASP n 1 46 MET n 1 47 VAL n 1 48 VAL n 1 49 MET n 1 50 ARG n 1 51 THR n 1 52 ASN n 1 53 PRO n 1 54 THR n 1 55 LEU n 1 56 ALA n 1 57 GLU n 1 58 SER n 1 59 MET n 1 60 ARG n 1 61 ARG n 1 62 LEU n 1 63 GLU n 1 64 ASP n 1 65 ALA n 1 66 PHE n 1 67 LEU n 1 68 ASN n 1 69 CYS n 1 70 LYS n 1 71 GLU n 1 72 GLU n 1 73 MET n 1 74 GLU n 1 75 LYS n 1 76 ASN n 1 77 TRP n 1 78 GLN n 1 79 GLU n 1 80 LEU n 1 81 LEU n 1 82 THR n 1 83 GLU n 1 84 THR n 1 85 LYS n 1 86 ARG n 1 87 LYS n 1 88 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 88 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Syce3, Tseg2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYCE3_MOUSE _struct_ref.pdbx_db_accession B5KM66 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MADSDPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQEL LTETKRKQ ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6H86 A 1 ? 88 ? B5KM66 1 ? 88 ? 1 88 2 1 6H86 B 1 ? 88 ? B5KM66 1 ? 88 ? 1 88 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6H86 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Citric acid, 7% 2-propanol, 1% PEG 20000, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-06-30 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9796 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9796 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6H86 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16498 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.89 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value 0.486 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6H86 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.901 _refine.ls_d_res_low 23.661 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16432 _refine.ls_number_reflns_R_free 830 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.56 _refine.ls_percent_reflns_R_free 5.05 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1934 _refine.ls_R_factor_R_free 0.2167 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1922 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.01 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.32 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.20 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1258 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 1331 _refine_hist.d_res_high 1.901 _refine_hist.d_res_low 23.661 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.016 ? 1340 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.232 ? 1810 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.670 ? 880 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.050 ? 202 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 232 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9007 2.0197 . . 124 2232 83.00 . . . 0.2871 . 0.2595 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0197 2.1755 . . 127 2699 99.00 . . . 0.2437 . 0.2105 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1755 2.3943 . . 145 2667 100.00 . . . 0.1962 . 0.1920 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3943 2.7403 . . 152 2692 100.00 . . . 0.2222 . 0.1828 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7403 3.4507 . . 149 2695 100.00 . . . 0.2441 . 0.1928 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4507 23.6632 . . 133 2617 97.00 . . . 0.1947 . 0.1863 . . . . . . . . . . # _struct.entry_id 6H86 _struct.title 'Rebuilt and re-refined PDB entry 4R3Q: Crystal structure of SYCE3' _struct.pdbx_descriptor 'Membrane-anchored junction protein, Telomere repeats-binding bouquet formation protein 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6H86 _struct_keywords.text 'Meiosis, synaptonemal complex, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 10 ? MET A 49 ? SER A 10 MET A 49 1 ? 40 HELX_P HELX_P2 AA2 THR A 54 ? LYS A 85 ? THR A 54 LYS A 85 1 ? 32 HELX_P HELX_P3 AA3 TYR B 11 ? MET B 49 ? TYR B 11 MET B 49 1 ? 39 HELX_P HELX_P4 AA4 THR B 54 ? LYS B 85 ? THR B 54 LYS B 85 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 6H86 _atom_sites.fract_transf_matrix[1][1] 0.013232 _atom_sites.fract_transf_matrix[1][2] 0.007639 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015279 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009851 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 ASP 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 PRO 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 GLU 8 8 ? ? ? A . n A 1 9 ARG 9 9 ? ? ? A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 MET 32 32 32 MET MET A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 TRP 77 77 77 TRP TRP A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ARG 86 86 ? ? ? A . n A 1 87 LYS 87 87 ? ? ? A . n A 1 88 GLN 88 88 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ALA 2 2 ? ? ? B . n B 1 3 ASP 3 3 ? ? ? B . n B 1 4 SER 4 4 ? ? ? B . n B 1 5 ASP 5 5 ? ? ? B . n B 1 6 PRO 6 6 ? ? ? B . n B 1 7 GLY 7 7 ? ? ? B . n B 1 8 GLU 8 8 ? ? ? B . n B 1 9 ARG 9 9 ? ? ? B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 TYR 11 11 11 TYR TYR B . n B 1 12 ASP 12 12 12 ASP ASP B . n B 1 13 ASN 13 13 13 ASN ASN B . n B 1 14 MET 14 14 14 MET MET B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 MET 17 17 17 MET MET B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 SER 19 19 19 SER SER B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 GLU 30 30 30 GLU GLU B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 MET 32 32 32 MET MET B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 ILE 35 35 35 ILE ILE B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 GLN 38 38 38 GLN GLN B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 TRP 41 41 41 TRP TRP B . n B 1 42 MET 42 42 42 MET MET B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 TYR 44 44 44 TYR TYR B . n B 1 45 ASP 45 45 45 ASP ASP B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 MET 49 49 49 MET MET B . n B 1 50 ARG 50 50 50 ARG ARG B . n B 1 51 THR 51 51 51 THR THR B . n B 1 52 ASN 52 52 52 ASN ASN B . n B 1 53 PRO 53 53 53 PRO PRO B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 MET 59 59 59 MET MET B . n B 1 60 ARG 60 60 60 ARG ARG B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 ALA 65 65 65 ALA ALA B . n B 1 66 PHE 66 66 66 PHE PHE B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 ASN 68 68 68 ASN ASN B . n B 1 69 CYS 69 69 69 CYS CYS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 MET 73 73 73 MET MET B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 LYS 75 75 75 LYS LYS B . n B 1 76 ASN 76 76 76 ASN ASN B . n B 1 77 TRP 77 77 77 TRP TRP B . n B 1 78 GLN 78 78 78 GLN GLN B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 THR 84 84 84 THR THR B . n B 1 85 LYS 85 85 85 LYS LYS B . n B 1 86 ARG 86 86 ? ? ? B . n B 1 87 LYS 87 87 ? ? ? B . n B 1 88 GLN 88 88 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 71 HOH HOH A . C 2 HOH 2 102 9 HOH HOH A . C 2 HOH 3 103 58 HOH HOH A . C 2 HOH 4 104 12 HOH HOH A . C 2 HOH 5 105 40 HOH HOH A . C 2 HOH 6 106 30 HOH HOH A . C 2 HOH 7 107 8 HOH HOH A . C 2 HOH 8 108 4 HOH HOH A . C 2 HOH 9 109 60 HOH HOH A . C 2 HOH 10 110 25 HOH HOH A . C 2 HOH 11 111 54 HOH HOH A . C 2 HOH 12 112 7 HOH HOH A . C 2 HOH 13 113 5 HOH HOH A . C 2 HOH 14 114 37 HOH HOH A . C 2 HOH 15 115 64 HOH HOH A . C 2 HOH 16 116 6 HOH HOH A . C 2 HOH 17 117 49 HOH HOH A . C 2 HOH 18 118 17 HOH HOH A . C 2 HOH 19 119 66 HOH HOH A . C 2 HOH 20 120 31 HOH HOH A . C 2 HOH 21 121 13 HOH HOH A . C 2 HOH 22 122 2 HOH HOH A . C 2 HOH 23 123 47 HOH HOH A . C 2 HOH 24 124 51 HOH HOH A . C 2 HOH 25 125 10 HOH HOH A . C 2 HOH 26 126 36 HOH HOH A . C 2 HOH 27 127 46 HOH HOH A . C 2 HOH 28 128 3 HOH HOH A . C 2 HOH 29 129 52 HOH HOH A . C 2 HOH 30 130 70 HOH HOH A . C 2 HOH 31 131 56 HOH HOH A . C 2 HOH 32 132 41 HOH HOH A . C 2 HOH 33 133 69 HOH HOH A . C 2 HOH 34 134 34 HOH HOH A . C 2 HOH 35 135 50 HOH HOH A . C 2 HOH 36 136 72 HOH HOH A . C 2 HOH 37 137 73 HOH HOH A . C 2 HOH 38 138 27 HOH HOH A . D 2 HOH 1 101 38 HOH HOH B . D 2 HOH 2 102 32 HOH HOH B . D 2 HOH 3 103 55 HOH HOH B . D 2 HOH 4 104 20 HOH HOH B . D 2 HOH 5 105 43 HOH HOH B . D 2 HOH 6 106 57 HOH HOH B . D 2 HOH 7 107 24 HOH HOH B . D 2 HOH 8 108 33 HOH HOH B . D 2 HOH 9 109 26 HOH HOH B . D 2 HOH 10 110 14 HOH HOH B . D 2 HOH 11 111 28 HOH HOH B . D 2 HOH 12 112 19 HOH HOH B . D 2 HOH 13 113 23 HOH HOH B . D 2 HOH 14 114 21 HOH HOH B . D 2 HOH 15 115 59 HOH HOH B . D 2 HOH 16 116 45 HOH HOH B . D 2 HOH 17 117 65 HOH HOH B . D 2 HOH 18 118 16 HOH HOH B . D 2 HOH 19 119 15 HOH HOH B . D 2 HOH 20 120 1 HOH HOH B . D 2 HOH 21 121 61 HOH HOH B . D 2 HOH 22 122 22 HOH HOH B . D 2 HOH 23 123 62 HOH HOH B . D 2 HOH 24 124 18 HOH HOH B . D 2 HOH 25 125 29 HOH HOH B . D 2 HOH 26 126 53 HOH HOH B . D 2 HOH 27 127 44 HOH HOH B . D 2 HOH 28 128 68 HOH HOH B . D 2 HOH 29 129 63 HOH HOH B . D 2 HOH 30 130 39 HOH HOH B . D 2 HOH 31 131 42 HOH HOH B . D 2 HOH 32 132 35 HOH HOH B . D 2 HOH 33 133 67 HOH HOH B . D 2 HOH 34 134 11 HOH HOH B . D 2 HOH 35 135 48 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4640 ? 1 MORE -49 ? 1 'SSA (A^2)' 9070 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 126 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-08 2 'Structure model' 1 1 2019-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_database_proc # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 31.5493 _pdbx_refine_tls.origin_y -11.0764 _pdbx_refine_tls.origin_z -0.2192 _pdbx_refine_tls.T[1][1] 0.1974 _pdbx_refine_tls.T[2][2] 0.1543 _pdbx_refine_tls.T[3][3] 0.3206 _pdbx_refine_tls.T[1][2] 0.0307 _pdbx_refine_tls.T[1][3] 0.0159 _pdbx_refine_tls.T[2][3] 0.0051 _pdbx_refine_tls.L[1][1] 1.3911 _pdbx_refine_tls.L[2][2] 2.1868 _pdbx_refine_tls.L[3][3] 6.5242 _pdbx_refine_tls.L[1][2] -0.6777 _pdbx_refine_tls.L[1][3] 0.1131 _pdbx_refine_tls.L[2][3] -0.1001 _pdbx_refine_tls.S[1][1] -0.1082 _pdbx_refine_tls.S[1][2] -0.1374 _pdbx_refine_tls.S[1][3] 0.0465 _pdbx_refine_tls.S[2][1] -0.1162 _pdbx_refine_tls.S[2][2] 0.0450 _pdbx_refine_tls.S[2][3] -0.0120 _pdbx_refine_tls.S[3][1] -0.3480 _pdbx_refine_tls.S[3][2] -0.1930 _pdbx_refine_tls.S[3][3] 0.0897 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2997: ???)' 1 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 127 ? ? O B HOH 129 ? ? 1.80 2 1 OD2 B ASP 45 ? ? O B HOH 101 ? ? 1.81 3 1 OH B TYR 44 ? ? O B HOH 102 ? ? 1.99 4 1 O B HOH 115 ? ? O B HOH 127 ? ? 2.00 5 1 O A HOH 109 ? ? O A HOH 115 ? ? 2.08 6 1 O A HOH 127 ? ? O A HOH 138 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 127 ? ? 1_555 O B HOH 133 ? ? 3_655 1.89 2 1 ND2 A ASN 22 ? ? 1_555 O B HOH 101 ? ? 3_655 1.97 3 1 O B HOH 106 ? ? 1_555 O B HOH 128 ? ? 2_545 2.03 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 MET _pdbx_validate_rmsd_bond.auth_seq_id_1 46 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SD _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 46 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.648 _pdbx_validate_rmsd_bond.bond_target_value 1.807 _pdbx_validate_rmsd_bond.bond_deviation -0.159 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.026 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 54 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -103.58 _pdbx_validate_torsion.psi 40.31 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A ASP 3 ? A ASP 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A PRO 6 ? A PRO 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A GLU 8 ? A GLU 8 9 1 Y 1 A ARG 9 ? A ARG 9 10 1 Y 1 A ARG 86 ? A ARG 86 11 1 Y 1 A LYS 87 ? A LYS 87 12 1 Y 1 A GLN 88 ? A GLN 88 13 1 Y 1 B MET 1 ? B MET 1 14 1 Y 1 B ALA 2 ? B ALA 2 15 1 Y 1 B ASP 3 ? B ASP 3 16 1 Y 1 B SER 4 ? B SER 4 17 1 Y 1 B ASP 5 ? B ASP 5 18 1 Y 1 B PRO 6 ? B PRO 6 19 1 Y 1 B GLY 7 ? B GLY 7 20 1 Y 1 B GLU 8 ? B GLU 8 21 1 Y 1 B ARG 9 ? B ARG 9 22 1 Y 1 B ARG 86 ? B ARG 86 23 1 Y 1 B LYS 87 ? B LYS 87 24 1 Y 1 B GLN 88 ? B GLN 88 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Wellcome Trust' 'United Kingdom' 104158/Z/14/Z 1 'Royal Society' 'United Kingdom' RG170118 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 SAXS 'SEC-SAXS ab initio envelope conforms the dimeric structure' 2 1 'light scattering' 'SEC-MALS confirms a dimeric structure' #