HEADER HYDROLASE 02-AUG-18 6H8N TITLE STRUCTURE OF PEPTIDOGLYCAN DEACETYLASE PDAC FROM BACILLUS SUBTILIS - TITLE 2 MUTANT D285S COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN-N-ACETYLMURAMIC ACID DEACETYLASE PDAC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEPTIDOGLYCAN MURNAC DEACETYLASE,POLYSACCHARIDE DEACETYLASE COMPND 5 PDAC; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: PDAC, YJEA, BSU12100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEACETYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SAINZ-POLO,L.GRIFOLL-ROMERO,D.ALBESA-JOVE,A.PLANAS,M.E.GUERIN REVDAT 4 17-JAN-24 6H8N 1 LINK REVDAT 3 01-APR-20 6H8N 1 JRNL REVDAT 2 25-MAR-20 6H8N 1 JRNL REVDAT 1 13-NOV-19 6H8N 0 JRNL AUTH L.GRIFOLL-ROMERO,M.A.SAINZ-POLO,D.ALBESA-JOVE,M.E.GUERIN, JRNL AUTH 2 X.BIARNES,A.PLANAS JRNL TITL STRUCTURE-FUNCTION RELATIONSHIPS UNDERLYING THE JRNL TITL 2 DUALN-ACETYLMURAMIC ANDN-ACETYLGLUCOSAMINE SPECIFICITIES OF JRNL TITL 3 THE BACTERIAL PEPTIDOGLYCAN DEACETYLASE PDAC. JRNL REF J.BIOL.CHEM. V. 294 19066 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31690626 JRNL DOI 10.1074/JBC.RA119.009510 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 114541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 11264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.1198 - 3.9082 0.99 7430 347 0.1535 0.1706 REMARK 3 2 3.9082 - 3.1048 0.99 7403 347 0.1497 0.1497 REMARK 3 3 3.1048 - 2.7131 1.00 7454 397 0.1489 0.1638 REMARK 3 4 2.7131 - 2.4654 1.00 7393 391 0.1436 0.1618 REMARK 3 5 2.4654 - 2.2889 1.00 7473 334 0.1357 0.1655 REMARK 3 6 2.2889 - 2.1541 1.00 7417 371 0.1289 0.1305 REMARK 3 7 2.1541 - 2.0463 1.00 7402 385 0.1331 0.1571 REMARK 3 8 2.0463 - 1.9572 1.00 7462 370 0.1370 0.1436 REMARK 3 9 1.9572 - 1.8819 1.00 7405 396 0.1386 0.1719 REMARK 3 10 1.8819 - 1.8170 1.00 7423 386 0.1434 0.1517 REMARK 3 11 1.8170 - 1.7602 1.00 7349 415 0.1436 0.1730 REMARK 3 12 1.7602 - 1.7099 1.00 7468 402 0.1421 0.1545 REMARK 3 13 1.7099 - 1.6649 1.00 7423 354 0.1484 0.1457 REMARK 3 14 1.6649 - 1.6243 1.00 7478 344 0.1531 0.1679 REMARK 3 15 1.6243 - 1.5874 1.00 7403 395 0.1546 0.1679 REMARK 3 16 1.5874 - 1.5536 1.00 7464 398 0.1671 0.1883 REMARK 3 17 1.5536 - 1.5226 1.00 7332 446 0.1704 0.1927 REMARK 3 18 1.5226 - 1.4938 1.00 7392 389 0.1821 0.1964 REMARK 3 19 1.4938 - 1.4672 1.00 7480 368 0.1880 0.2043 REMARK 3 20 1.4672 - 1.4423 1.00 7408 396 0.1920 0.2145 REMARK 3 21 1.4423 - 1.4190 1.00 7408 400 0.2040 0.2322 REMARK 3 22 1.4190 - 1.3972 1.00 7477 362 0.2194 0.2277 REMARK 3 23 1.3972 - 1.3767 1.00 7402 409 0.2308 0.2507 REMARK 3 24 1.3767 - 1.3573 0.99 7370 394 0.2470 0.2527 REMARK 3 25 1.3573 - 1.3389 0.98 7246 363 0.2574 0.2565 REMARK 3 26 1.3389 - 1.3216 0.96 7150 375 0.2752 0.3019 REMARK 3 27 1.3216 - 1.3050 0.93 6913 357 0.2893 0.3011 REMARK 3 28 1.3050 - 1.2893 0.89 6589 335 0.3082 0.2977 REMARK 3 29 1.2893 - 1.2743 0.83 6230 343 0.3151 0.3171 REMARK 3 30 1.2743 - 1.2600 0.76 5574 295 0.3244 0.3196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3431 REMARK 3 ANGLE : 0.977 4668 REMARK 3 CHIRALITY : 0.074 522 REMARK 3 PLANARITY : 0.006 604 REMARK 3 DIHEDRAL : 22.659 1329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 22.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06804 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48310 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H8L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM PHOSPHATE MONOBASIC, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 THR A 247 REMARK 465 HIS A 450 REMARK 465 PRO A 451 REMARK 465 GLN A 452 REMARK 465 PHE A 453 REMARK 465 GLU A 454 REMARK 465 LYS A 455 REMARK 465 MET B 244 REMARK 465 GLU B 245 REMARK 465 GLU B 246 REMARK 465 THR B 247 REMARK 465 GLU B 454 REMARK 465 LYS B 455 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 ARG B 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 339 CG CD CE NZ REMARK 470 ARG B 344 NE CZ NH1 NH2 REMARK 470 LYS B 364 CG CD CE NZ REMARK 470 ARG B 397 NE CZ NH1 NH2 REMARK 470 ARG B 406 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 450 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 452 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 397 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 261 -7.78 104.94 REMARK 500 SER A 312 171.80 81.55 REMARK 500 HIS A 315 33.06 70.60 REMARK 500 LEU A 369 -137.29 -102.02 REMARK 500 ASP A 403 40.64 -85.66 REMARK 500 ASP B 261 -7.69 104.24 REMARK 500 SER B 312 173.56 80.42 REMARK 500 LEU B 369 -136.51 -101.61 REMARK 500 ASP B 403 36.02 -87.06 REMARK 500 TRP B 448 -17.22 -140.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 261 OD1 REMARK 620 2 HIS A 311 NE2 94.2 REMARK 620 3 HIS A 315 NE2 104.1 104.3 REMARK 620 4 PO4 A 502 O3 114.4 122.9 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 261 OD1 REMARK 620 2 HIS B 311 NE2 93.9 REMARK 620 3 HIS B 315 NE2 104.1 102.9 REMARK 620 4 PO4 B 503 O1 113.8 124.8 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 503 DBREF 6H8N A 245 442 UNP O34798 PDAC_BACSU 270 467 DBREF 6H8N B 245 442 UNP O34798 PDAC_BACSU 270 467 SEQADV 6H8N MET A 244 UNP O34798 INITIATING METHIONINE SEQADV 6H8N SER A 260 UNP O34798 ASP 285 ENGINEERED MUTATION SEQADV 6H8N GLU A 443 UNP O34798 EXPRESSION TAG SEQADV 6H8N LEU A 444 UNP O34798 EXPRESSION TAG SEQADV 6H8N ARG A 445 UNP O34798 EXPRESSION TAG SEQADV 6H8N ARG A 446 UNP O34798 EXPRESSION TAG SEQADV 6H8N GLN A 447 UNP O34798 EXPRESSION TAG SEQADV 6H8N TRP A 448 UNP O34798 EXPRESSION TAG SEQADV 6H8N SER A 449 UNP O34798 EXPRESSION TAG SEQADV 6H8N HIS A 450 UNP O34798 EXPRESSION TAG SEQADV 6H8N PRO A 451 UNP O34798 EXPRESSION TAG SEQADV 6H8N GLN A 452 UNP O34798 EXPRESSION TAG SEQADV 6H8N PHE A 453 UNP O34798 EXPRESSION TAG SEQADV 6H8N GLU A 454 UNP O34798 EXPRESSION TAG SEQADV 6H8N LYS A 455 UNP O34798 EXPRESSION TAG SEQADV 6H8N MET B 244 UNP O34798 INITIATING METHIONINE SEQADV 6H8N SER B 260 UNP O34798 ASP 285 ENGINEERED MUTATION SEQADV 6H8N GLU B 443 UNP O34798 EXPRESSION TAG SEQADV 6H8N LEU B 444 UNP O34798 EXPRESSION TAG SEQADV 6H8N ARG B 445 UNP O34798 EXPRESSION TAG SEQADV 6H8N ARG B 446 UNP O34798 EXPRESSION TAG SEQADV 6H8N GLN B 447 UNP O34798 EXPRESSION TAG SEQADV 6H8N TRP B 448 UNP O34798 EXPRESSION TAG SEQADV 6H8N SER B 449 UNP O34798 EXPRESSION TAG SEQADV 6H8N HIS B 450 UNP O34798 EXPRESSION TAG SEQADV 6H8N PRO B 451 UNP O34798 EXPRESSION TAG SEQADV 6H8N GLN B 452 UNP O34798 EXPRESSION TAG SEQADV 6H8N PHE B 453 UNP O34798 EXPRESSION TAG SEQADV 6H8N GLU B 454 UNP O34798 EXPRESSION TAG SEQADV 6H8N LYS B 455 UNP O34798 EXPRESSION TAG SEQRES 1 A 212 MET GLU GLU THR VAL ASP PRO ASN GLN LYS VAL ILE ALA SEQRES 2 A 212 LEU THR PHE SER ASP GLY PRO ASN PRO ALA THR THR ASN SEQRES 3 A 212 GLN ILE LEU ASP SER LEU LYS LYS TYR LYS GLY HIS ALA SEQRES 4 A 212 THR PHE PHE VAL LEU GLY SER ARG VAL GLN TYR TYR PRO SEQRES 5 A 212 GLU THR LEU ILE ARG MET LEU LYS GLU GLY ASN GLU VAL SEQRES 6 A 212 GLY ASN HIS SER TRP SER HIS PRO LEU LEU THR ARG LEU SEQRES 7 A 212 SER VAL LYS GLU ALA LEU LYS GLN ILE ASN ASP THR GLN SEQRES 8 A 212 ASP ILE ILE GLU LYS ILE SER GLY TYR ARG PRO THR LEU SEQRES 9 A 212 VAL ARG PRO PRO TYR GLY GLY ILE ASN ASP GLU LEU ARG SEQRES 10 A 212 SER GLN MET LYS MET ASP VAL ALA LEU TRP ASP VAL ASP SEQRES 11 A 212 PRO GLU ASP TRP LYS ASP ARG ASN LYS LYS THR ILE VAL SEQRES 12 A 212 ASP ARG VAL MET ASN GLN ALA GLY ASP GLY ARG THR ILE SEQRES 13 A 212 LEU ILE HIS ASP ILE TYR ARG THR SER ALA ASP ALA ALA SEQRES 14 A 212 ASP GLU ILE ILE LYS LYS LEU THR ASP GLN GLY TYR GLN SEQRES 15 A 212 LEU VAL THR VAL SER GLN LEU GLU GLU VAL LYS LYS GLN SEQRES 16 A 212 ARG GLU ALA LYS GLU LEU ARG ARG GLN TRP SER HIS PRO SEQRES 17 A 212 GLN PHE GLU LYS SEQRES 1 B 212 MET GLU GLU THR VAL ASP PRO ASN GLN LYS VAL ILE ALA SEQRES 2 B 212 LEU THR PHE SER ASP GLY PRO ASN PRO ALA THR THR ASN SEQRES 3 B 212 GLN ILE LEU ASP SER LEU LYS LYS TYR LYS GLY HIS ALA SEQRES 4 B 212 THR PHE PHE VAL LEU GLY SER ARG VAL GLN TYR TYR PRO SEQRES 5 B 212 GLU THR LEU ILE ARG MET LEU LYS GLU GLY ASN GLU VAL SEQRES 6 B 212 GLY ASN HIS SER TRP SER HIS PRO LEU LEU THR ARG LEU SEQRES 7 B 212 SER VAL LYS GLU ALA LEU LYS GLN ILE ASN ASP THR GLN SEQRES 8 B 212 ASP ILE ILE GLU LYS ILE SER GLY TYR ARG PRO THR LEU SEQRES 9 B 212 VAL ARG PRO PRO TYR GLY GLY ILE ASN ASP GLU LEU ARG SEQRES 10 B 212 SER GLN MET LYS MET ASP VAL ALA LEU TRP ASP VAL ASP SEQRES 11 B 212 PRO GLU ASP TRP LYS ASP ARG ASN LYS LYS THR ILE VAL SEQRES 12 B 212 ASP ARG VAL MET ASN GLN ALA GLY ASP GLY ARG THR ILE SEQRES 13 B 212 LEU ILE HIS ASP ILE TYR ARG THR SER ALA ASP ALA ALA SEQRES 14 B 212 ASP GLU ILE ILE LYS LYS LEU THR ASP GLN GLY TYR GLN SEQRES 15 B 212 LEU VAL THR VAL SER GLN LEU GLU GLU VAL LYS LYS GLN SEQRES 16 B 212 ARG GLU ALA LYS GLU LEU ARG ARG GLN TRP SER HIS PRO SEQRES 17 B 212 GLN PHE GLU LYS HET ZN A 501 1 HET PO4 A 502 5 HET PO4 A 503 5 HET GOL A 504 6 HET GOL B 501 6 HET ZN B 502 1 HET PO4 B 503 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PO4 3(O4 P 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 10 HOH *467(H2 O) HELIX 1 AA1 ASN A 264 LYS A 279 1 16 HELIX 2 AA2 LEU A 287 TYR A 294 1 8 HELIX 3 AA3 TYR A 294 GLU A 304 1 11 HELIX 4 AA4 LEU A 317 LEU A 321 5 5 HELIX 5 AA5 SER A 322 GLY A 342 1 21 HELIX 6 AA6 PRO A 350 GLY A 354 5 5 HELIX 7 AA7 ASN A 356 LYS A 364 1 9 HELIX 8 AA8 ASN A 381 ALA A 393 1 13 HELIX 9 AA9 TYR A 405 GLN A 422 1 18 HELIX 10 AB1 THR A 428 ALA A 441 1 14 HELIX 11 AB2 LYS A 442 TRP A 448 5 7 HELIX 12 AB3 ASN B 264 TYR B 278 1 15 HELIX 13 AB4 LEU B 287 TYR B 294 1 8 HELIX 14 AB5 TYR B 294 GLU B 304 1 11 HELIX 15 AB6 LEU B 317 LEU B 321 5 5 HELIX 16 AB7 SER B 322 GLY B 342 1 21 HELIX 17 AB8 PRO B 350 GLY B 354 5 5 HELIX 18 AB9 ASN B 356 LYS B 364 1 9 HELIX 19 AC1 ASN B 381 ALA B 393 1 13 HELIX 20 AC2 TYR B 405 GLN B 422 1 18 HELIX 21 AC3 THR B 428 ALA B 441 1 14 HELIX 22 AC4 LYS B 442 TRP B 448 5 7 SHEET 1 AA1 4 GLU A 307 ASN A 310 0 SHEET 2 AA1 4 THR A 283 VAL A 286 1 N PHE A 284 O GLY A 309 SHEET 3 AA1 4 VAL A 254 SER A 260 1 N PHE A 259 O PHE A 285 SHEET 4 AA1 4 THR A 398 HIS A 402 1 O ILE A 399 N ALA A 256 SHEET 1 AA2 4 GLU A 307 ASN A 310 0 SHEET 2 AA2 4 THR A 283 VAL A 286 1 N PHE A 284 O GLY A 309 SHEET 3 AA2 4 VAL A 254 SER A 260 1 N PHE A 259 O PHE A 285 SHEET 4 AA2 4 GLN A 425 LEU A 426 1 O GLN A 425 N ILE A 255 SHEET 1 AA3 2 LEU A 347 VAL A 348 0 SHEET 2 AA3 2 ASP A 366 VAL A 367 1 O ASP A 366 N VAL A 348 SHEET 1 AA4 4 GLU B 307 ASN B 310 0 SHEET 2 AA4 4 THR B 283 VAL B 286 1 N PHE B 284 O GLY B 309 SHEET 3 AA4 4 VAL B 254 SER B 260 1 N PHE B 259 O PHE B 285 SHEET 4 AA4 4 THR B 398 HIS B 402 1 O ILE B 399 N ALA B 256 SHEET 1 AA5 4 GLU B 307 ASN B 310 0 SHEET 2 AA5 4 THR B 283 VAL B 286 1 N PHE B 284 O GLY B 309 SHEET 3 AA5 4 VAL B 254 SER B 260 1 N PHE B 259 O PHE B 285 SHEET 4 AA5 4 GLN B 425 LEU B 426 1 O GLN B 425 N ILE B 255 SHEET 1 AA6 2 LEU B 347 VAL B 348 0 SHEET 2 AA6 2 ASP B 366 VAL B 367 1 O ASP B 366 N VAL B 348 LINK OD1 ASP A 261 ZN ZN A 501 1555 1555 1.95 LINK NE2 HIS A 311 ZN ZN A 501 1555 1555 2.05 LINK NE2 HIS A 315 ZN ZN A 501 1555 1555 2.01 LINK ZN ZN A 501 O3 PO4 A 502 1555 1555 1.90 LINK OD1 ASP B 261 ZN ZN B 502 1555 1555 1.95 LINK NE2 HIS B 311 ZN ZN B 502 1555 1555 2.04 LINK NE2 HIS B 315 ZN ZN B 502 1555 1555 2.03 LINK ZN ZN B 502 O1 PO4 B 503 1555 1555 1.85 CISPEP 1 GLY A 262 PRO A 263 0 4.94 CISPEP 2 GLY B 262 PRO B 263 0 4.50 SITE 1 AC1 4 ASP A 261 HIS A 311 HIS A 315 PO4 A 502 SITE 1 AC2 12 ASP A 261 HIS A 311 HIS A 315 PRO A 351 SITE 2 AC2 12 TYR A 352 LEU A 400 HIS A 402 ZN A 501 SITE 3 AC2 12 HOH A 642 HOH A 655 GLU B 443 ARG B 446 SITE 1 AC3 7 SER A 322 LYS A 324 GLU A 325 HOH A 611 SITE 2 AC3 7 ASP B 379 ASN B 381 THR B 384 SITE 1 AC4 8 ASP A 395 GLY A 396 ARG A 397 HOH A 602 SITE 2 AC4 8 ASP B 395 GLY B 396 ARG B 397 LYS B 436 SITE 1 AC5 4 LEU A 287 TYR A 352 HOH A 706 ARG B 446 SITE 1 AC6 4 ASP B 261 HIS B 311 HIS B 315 PO4 B 503 SITE 1 AC7 12 GLU A 443 ARG A 446 ASP B 261 HIS B 311 SITE 2 AC7 12 HIS B 315 PRO B 351 TYR B 352 LEU B 400 SITE 3 AC7 12 HIS B 402 ZN B 502 HOH B 624 HOH B 643 CRYST1 55.420 61.800 130.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007634 0.00000