HEADER GENE REGULATION 04-AUG-18 6H9J TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND TRPV3 (229- TITLE 2 255) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V COMPND 10 MEMBER 3; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: TRPV3,VANILLOID RECEPTOR-LIKE 3,VRL-3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NON-HEME, DIOXYGENASE, OXYGENASE, METAL-BINDING, TRANSCRIPTION, DSBH, KEYWDS 2 FACIAL TRIAD, ASPARAGINYL/ASPARTYL HYDROXYLASE, SIGNALING, ARD, KEYWDS 3 BETA-HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE KEYWDS 4 COMPLEX, OXIDOREDUCTASE ANKYRIN, CHANNEL, PROTEIN BINDING, ION KEYWDS 5 CHANNEL, TRPV CHANNEL, MEMBRANE PROTEIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,I.J.CLIFTON,B.G.SAWARD,X.LU,R.J.HOPKINSON,C.J.SCHOFIELD REVDAT 2 17-JAN-24 6H9J 1 REMARK REVDAT 1 14-AUG-19 6H9J 0 JRNL AUTH T.M.LEISSING,I.J.CLIFTON,B.G.SAWARD,X.LU,R.J.HOPKINSON, JRNL AUTH 2 C.J.SCHOFIELD JRNL TITL FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND JRNL TITL 2 TRPV3 (229-255) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6433 - 4.7931 1.00 2892 162 0.1784 0.1986 REMARK 3 2 4.7931 - 3.8055 1.00 2774 153 0.1268 0.1477 REMARK 3 3 3.8055 - 3.3248 1.00 2710 132 0.1502 0.1550 REMARK 3 4 3.3248 - 3.0209 1.00 2689 157 0.1729 0.1888 REMARK 3 5 3.0209 - 2.8045 1.00 2699 133 0.1754 0.2149 REMARK 3 6 2.8045 - 2.6392 1.00 2675 146 0.1692 0.1793 REMARK 3 7 2.6392 - 2.5070 1.00 2692 128 0.1613 0.1718 REMARK 3 8 2.5070 - 2.3979 1.00 2599 152 0.1584 0.2079 REMARK 3 9 2.3979 - 2.3056 1.00 2654 152 0.1612 0.2214 REMARK 3 10 2.3056 - 2.2260 1.00 2660 133 0.1693 0.2094 REMARK 3 11 2.2260 - 2.1565 1.00 2647 135 0.1711 0.2007 REMARK 3 12 2.1565 - 2.0948 1.00 2659 123 0.1815 0.1782 REMARK 3 13 2.0948 - 2.0397 1.00 2643 138 0.1982 0.2289 REMARK 3 14 2.0397 - 1.9899 1.00 2595 152 0.2043 0.2444 REMARK 3 15 1.9899 - 1.9447 1.00 2680 141 0.2308 0.2591 REMARK 3 16 1.9447 - 1.9033 1.00 2609 133 0.3053 0.2955 REMARK 3 17 1.9033 - 1.8652 1.00 2606 138 0.2996 0.3155 REMARK 3 18 1.8652 - 1.8300 1.00 2664 125 0.3179 0.3284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3030 REMARK 3 ANGLE : 1.065 4122 REMARK 3 CHIRALITY : 0.071 418 REMARK 3 PLANARITY : 0.008 545 REMARK 3 DIHEDRAL : 15.429 1770 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0759 10.6937 -23.1681 REMARK 3 T TENSOR REMARK 3 T11: 0.4387 T22: 0.7053 REMARK 3 T33: 0.6786 T12: 0.0073 REMARK 3 T13: 0.0248 T23: -0.2211 REMARK 3 L TENSOR REMARK 3 L11: 0.5536 L22: 0.5477 REMARK 3 L33: 1.2226 L12: -0.2020 REMARK 3 L13: -0.7269 L23: 0.0667 REMARK 3 S TENSOR REMARK 3 S11: -0.2274 S12: 0.4878 S13: -0.7329 REMARK 3 S21: -0.2588 S22: -0.2246 S23: -0.0121 REMARK 3 S31: 0.2562 S32: -0.1017 S33: 0.4094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9380 19.3268 -7.8632 REMARK 3 T TENSOR REMARK 3 T11: 0.3135 T22: 0.4006 REMARK 3 T33: 0.4096 T12: -0.0249 REMARK 3 T13: -0.0840 T23: -0.0989 REMARK 3 L TENSOR REMARK 3 L11: 3.7569 L22: 2.3868 REMARK 3 L33: 4.4418 L12: -1.0727 REMARK 3 L13: -1.1346 L23: -0.4491 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: -0.2929 S13: -0.2510 REMARK 3 S21: 0.2817 S22: 0.0055 S23: -0.0804 REMARK 3 S31: 0.0745 S32: 0.3414 S33: 0.1070 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6605 7.6218 3.3989 REMARK 3 T TENSOR REMARK 3 T11: 0.7489 T22: 0.9274 REMARK 3 T33: 0.5827 T12: 0.2747 REMARK 3 T13: -0.0773 T23: 0.1593 REMARK 3 L TENSOR REMARK 3 L11: 5.5839 L22: 6.8989 REMARK 3 L33: 1.0879 L12: -0.4425 REMARK 3 L13: -1.3351 L23: 1.2672 REMARK 3 S TENSOR REMARK 3 S11: -0.2770 S12: -0.9996 S13: -0.7895 REMARK 3 S21: 1.0765 S22: 0.0166 S23: -0.3786 REMARK 3 S31: 0.5015 S32: 0.6748 S33: 0.2431 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8150 23.3382 -10.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.5071 REMARK 3 T33: 0.3290 T12: 0.0050 REMARK 3 T13: -0.0848 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 2.6944 L22: 4.5997 REMARK 3 L33: 3.8162 L12: -0.7253 REMARK 3 L13: -1.4048 L23: -2.3972 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: -0.4896 S13: 0.0725 REMARK 3 S21: 0.3440 S22: 0.0564 S23: -0.1080 REMARK 3 S31: -0.0749 S32: 0.5399 S33: -0.0539 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0450 20.1354 -10.3587 REMARK 3 T TENSOR REMARK 3 T11: 0.3258 T22: 0.4407 REMARK 3 T33: 0.3912 T12: 0.0122 REMARK 3 T13: -0.0246 T23: -0.0729 REMARK 3 L TENSOR REMARK 3 L11: 3.5302 L22: 0.8743 REMARK 3 L33: 1.6630 L12: -0.5691 REMARK 3 L13: -1.3387 L23: 0.2220 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.0861 S13: -0.2595 REMARK 3 S21: 0.1102 S22: -0.0073 S23: -0.0289 REMARK 3 S31: 0.0952 S32: 0.0359 S33: -0.0160 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8415 40.7178 -7.6854 REMARK 3 T TENSOR REMARK 3 T11: 0.3687 T22: 0.2791 REMARK 3 T33: 0.4079 T12: -0.0064 REMARK 3 T13: 0.0747 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 7.3165 L22: 3.8879 REMARK 3 L33: 5.5184 L12: -0.9230 REMARK 3 L13: -2.8193 L23: 0.6621 REMARK 3 S TENSOR REMARK 3 S11: 0.2814 S12: 0.1282 S13: 0.5993 REMARK 3 S21: -0.2894 S22: -0.0109 S23: -0.2172 REMARK 3 S31: -0.4870 S32: 0.0464 S33: -0.2844 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.5196 37.5775 4.9162 REMARK 3 T TENSOR REMARK 3 T11: 0.5365 T22: 0.4965 REMARK 3 T33: 0.3784 T12: -0.0005 REMARK 3 T13: 0.1037 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.0587 L22: 4.0383 REMARK 3 L33: 6.1846 L12: -2.1484 REMARK 3 L13: 4.7881 L23: -1.3814 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.1706 S13: -0.0848 REMARK 3 S21: 0.2546 S22: -0.0460 S23: 0.0786 REMARK 3 S31: 0.2257 S32: 0.2623 S33: -0.0923 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 229 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6992 47.5541 -7.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.7962 T22: 0.8324 REMARK 3 T33: 1.0224 T12: 0.0214 REMARK 3 T13: 0.2521 T23: 0.1530 REMARK 3 L TENSOR REMARK 3 L11: 3.7688 L22: 2.5771 REMARK 3 L33: 3.6226 L12: 1.3308 REMARK 3 L13: -3.5759 L23: -0.7042 REMARK 3 S TENSOR REMARK 3 S11: 1.3765 S12: 2.1859 S13: 3.3884 REMARK 3 S21: -0.9133 S22: 0.0630 S23: -0.6190 REMARK 3 S31: -2.2853 S32: 0.1135 S33: -1.3377 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 236 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0604 29.9811 -3.6093 REMARK 3 T TENSOR REMARK 3 T11: 0.4806 T22: 0.8776 REMARK 3 T33: 0.7278 T12: -0.0641 REMARK 3 T13: -0.1205 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 6.3342 L22: 0.9490 REMARK 3 L33: 6.1861 L12: -1.7334 REMARK 3 L13: -5.7295 L23: 2.2155 REMARK 3 S TENSOR REMARK 3 S11: 0.2978 S12: -1.5050 S13: 0.3787 REMARK 3 S21: 0.3848 S22: -0.1825 S23: -0.9338 REMARK 3 S31: 0.1053 S32: 1.4098 S33: -0.1677 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 38.635 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.10540 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.10 REMARK 200 R MERGE FOR SHELL (I) : 2.85400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH = 7.5, 1.8 M AMMONIUM REMARK 280 SULFATE, 4.5% PEG400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.40500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.21500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.40500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.21500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -235.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -86.40000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 86.40000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 13 OG REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 106 CD CE NZ REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 304 CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 LEU D 233 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -2.80 84.43 REMARK 500 PHE A 100 73.54 -106.49 REMARK 500 ASP A 237 130.34 -39.64 REMARK 500 ARG A 238 -8.45 83.54 REMARK 500 ASN A 246 77.37 -154.31 REMARK 500 TYR A 276 -1.82 79.33 REMARK 500 ASN A 332 117.90 -163.26 REMARK 500 TYR A 348 -5.37 -141.73 REMARK 500 TYR A 348 -5.37 -141.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 103.7 REMARK 620 3 HIS A 279 NE2 92.0 91.1 REMARK 620 4 OGA A 401 O2 163.0 89.2 98.9 REMARK 620 5 OGA A 401 O2' 84.0 165.6 100.9 81.2 REMARK 620 6 HOH A 509 O 77.7 92.7 169.6 90.9 76.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 DBREF 6H9J A 12 349 UNP Q9NWT6 HIF1N_HUMAN 12 349 DBREF 6H9J D 229 250 UNP Q8NET8 TRPV3_HUMAN 229 250 SEQRES 1 A 338 GLY SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY SEQRES 2 A 338 PRO ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE SEQRES 3 A 338 PRO THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO SEQRES 4 A 338 ARG ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL SEQRES 5 A 338 LEU THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP SEQRES 6 A 338 ASP LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP SEQRES 7 A 338 PHE SER VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR SEQRES 8 A 338 TYR ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS SEQRES 9 A 338 PRO ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE SEQRES 10 A 338 VAL GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU SEQRES 11 A 338 GLU ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL SEQRES 12 A 338 GLY ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP SEQRES 13 A 338 ASN TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY SEQRES 14 A 338 GLN LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY SEQRES 15 A 338 ASN VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE SEQRES 16 A 338 PHE ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE SEQRES 17 A 338 PRO PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL SEQRES 18 A 338 HIS HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP SEQRES 19 A 338 ASN PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL SEQRES 20 A 338 VAL GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU SEQRES 21 A 338 TYR ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU SEQRES 22 A 338 LEU ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR SEQRES 23 A 338 LYS GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU SEQRES 24 A 338 LYS ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU SEQRES 25 A 338 LYS MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL SEQRES 26 A 338 GLY PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 D 22 ASP ILE ALA ALA LEU LEU ILE ALA ALA GLY ALA ASP VAL SEQRES 2 D 22 ASN ALA HIS ALA LYS GLY ALA PHE PHE HET OGA A 401 10 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET ZN A 409 1 HETNAM OGA N-OXALYLGLYCINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 OGA C4 H5 N O5 FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 ZN ZN 2+ FORMUL 12 HOH *159(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 ASP A 104 PHE A 111 5 8 HELIX 6 AA6 PHE A 125 GLY A 139 1 15 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 GLY A 178 1 13 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 GLY A 331 1 21 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 HELIX 15 AB6 ILE D 230 ALA D 236 1 7 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O GLU A 282 N ARG A 215 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 SER A 118 LYS A 124 -1 O ASN A 119 N SER A 94 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 409 1555 1555 2.11 LINK OD2 ASP A 201 ZN ZN A 409 1555 1555 1.95 LINK NE2 HIS A 279 ZN ZN A 409 1555 1555 2.06 LINK O2 OGA A 401 ZN ZN A 409 1555 1555 2.12 LINK O2' OGA A 401 ZN ZN A 409 1555 1555 2.01 LINK ZN ZN A 409 O HOH A 509 1555 1555 2.04 CISPEP 1 TYR A 308 PRO A 309 0 2.90 SITE 1 AC1 14 TYR A 145 THR A 196 HIS A 199 ASP A 201 SITE 2 AC1 14 ASN A 205 PHE A 207 LYS A 214 HIS A 279 SITE 3 AC1 14 ILE A 281 ASN A 294 TRP A 296 ZN A 409 SITE 4 AC1 14 HOH A 509 HOH A 590 SITE 1 AC2 3 TYR A 230 SER A 240 GLN A 241 SITE 1 AC3 4 GLU A 59 MET A 275 ALA A 300 HIS A 313 SITE 1 AC4 5 ARG A 33 HIS A 98 ARG A 143 LEU A 285 SITE 2 AC4 5 SO4 A 408 SITE 1 AC5 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC6 3 LYS A 311 ALA A 312 HOH A 514 SITE 1 AC7 1 ARG A 120 SITE 1 AC8 6 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC8 6 ASN A 286 GOL A 404 SITE 1 AC9 5 HIS A 199 ASP A 201 HIS A 279 OGA A 401 SITE 2 AC9 5 HOH A 509 CRYST1 86.400 86.400 149.620 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006684 0.00000