HEADER VIRAL PROTEIN 06-AUG-18 6H9V TITLE CRYSTAL STRUCTURE OF DEAMINATED P DOMAIN FROM NOROVIRUS STRAIN SAGA TITLE 2 GII-4 IN COMPLEX WITH FUC COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: E373 IS CONVERTED TO IAS (ISOASPARTATE) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII-4/SAGA4/2006/JP; SOURCE 3 ORGANISM_TAXID: 546981; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS VIRAL CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN, ISOASPARTATE, KEYWDS 2 ISOPEPTIDE, FUCOSE, GLYCAN, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR P.H.O.MEYER,B.S.BLAUM REVDAT 2 29-JUL-20 6H9V 1 COMPND REMARK HETNAM SITE REVDAT 1 03-APR-19 6H9V 0 JRNL AUTH A.MALLAGARAY,R.CREUTZNACHER,J.DULFER,P.H.O.MAYER,L.L.GRIMM, JRNL AUTH 2 J.M.ORDUNA,E.TRABJERG,T.STEHLE,K.D.RAND,B.S.BLAUM, JRNL AUTH 3 C.UETRECHT,T.PETERS JRNL TITL A POST-TRANSLATIONAL MODIFICATION OF HUMAN NOROVIRUS CAPSID JRNL TITL 2 PROTEIN ATTENUATES GLYCAN BINDING. JRNL REF NAT COMMUN V. 10 1320 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30899001 JRNL DOI 10.1038/S41467-019-09251-5 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 88339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5902 - 4.7206 1.00 2903 153 0.1465 0.1778 REMARK 3 2 4.7206 - 3.7478 1.00 2865 151 0.1102 0.1332 REMARK 3 3 3.7478 - 3.2743 0.96 2719 143 0.1306 0.1665 REMARK 3 4 3.2743 - 2.9750 0.98 2759 145 0.1307 0.1615 REMARK 3 5 2.9750 - 2.7619 1.00 2835 150 0.1475 0.2035 REMARK 3 6 2.7619 - 2.5991 1.00 2823 148 0.1442 0.1761 REMARK 3 7 2.5991 - 2.4689 1.00 2815 148 0.1421 0.1809 REMARK 3 8 2.4689 - 2.3615 1.00 2828 149 0.1350 0.1929 REMARK 3 9 2.3615 - 2.2706 1.00 2808 148 0.1365 0.1762 REMARK 3 10 2.2706 - 2.1922 1.00 2859 151 0.1319 0.1573 REMARK 3 11 2.1922 - 2.1237 1.00 2819 148 0.1320 0.1778 REMARK 3 12 2.1237 - 2.0630 1.00 2824 149 0.1298 0.1625 REMARK 3 13 2.0630 - 2.0087 1.00 2796 147 0.1441 0.1743 REMARK 3 14 2.0087 - 1.9597 0.99 2801 147 0.1433 0.1786 REMARK 3 15 1.9597 - 1.9151 0.95 2681 141 0.1505 0.1889 REMARK 3 16 1.9151 - 1.8744 0.98 2780 147 0.1499 0.1664 REMARK 3 17 1.8744 - 1.8369 0.98 2759 145 0.1641 0.2036 REMARK 3 18 1.8369 - 1.8022 0.98 2766 145 0.1650 0.2146 REMARK 3 19 1.8022 - 1.7700 0.98 2795 147 0.1822 0.2256 REMARK 3 20 1.7700 - 1.7400 0.99 2752 145 0.1872 0.2171 REMARK 3 21 1.7400 - 1.7119 0.99 2777 147 0.1866 0.2375 REMARK 3 22 1.7119 - 1.6856 0.99 2803 147 0.2068 0.2389 REMARK 3 23 1.6856 - 1.6608 0.99 2788 147 0.2075 0.2446 REMARK 3 24 1.6608 - 1.6374 0.99 2771 146 0.2268 0.2897 REMARK 3 25 1.6374 - 1.6153 0.99 2799 147 0.2412 0.2890 REMARK 3 26 1.6153 - 1.5943 0.99 2804 148 0.2515 0.2842 REMARK 3 27 1.5943 - 1.5744 0.99 2847 149 0.2703 0.2719 REMARK 3 28 1.5744 - 1.5554 1.00 2763 146 0.2785 0.3299 REMARK 3 29 1.5554 - 1.5373 0.99 2809 148 0.3148 0.3637 REMARK 3 30 1.5373 - 1.5200 1.00 2773 146 0.3290 0.3583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5202 REMARK 3 ANGLE : 0.932 7153 REMARK 3 CHIRALITY : 0.061 799 REMARK 3 PLANARITY : 0.007 950 REMARK 3 DIHEDRAL : 11.011 3051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5043 -15.3896 60.3178 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1582 REMARK 3 T33: 0.1853 T12: 0.0017 REMARK 3 T13: -0.0007 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.4974 L22: 0.4029 REMARK 3 L33: 0.3496 L12: -0.0668 REMARK 3 L13: 0.1032 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0118 S13: 0.0129 REMARK 3 S21: -0.0115 S22: -0.0126 S23: 0.0545 REMARK 3 S31: 0.0037 S32: -0.0088 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8892 -5.3017 48.6022 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.1734 REMARK 3 T33: 0.1814 T12: 0.0053 REMARK 3 T13: -0.0212 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.2004 L22: 0.2839 REMARK 3 L33: 0.1148 L12: 0.0038 REMARK 3 L13: 0.1062 L23: 0.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0315 S13: 0.0224 REMARK 3 S21: -0.0669 S22: 0.0258 S23: 0.0857 REMARK 3 S31: -0.1200 S32: -0.0607 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0179 -7.2185 68.4387 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1656 REMARK 3 T33: 0.1784 T12: 0.0070 REMARK 3 T13: 0.0056 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.2898 L22: 0.3432 REMARK 3 L33: 0.1822 L12: 0.0945 REMARK 3 L13: -0.1575 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.0321 S13: 0.0840 REMARK 3 S21: 0.0267 S22: 0.0260 S23: 0.0773 REMARK 3 S31: -0.0659 S32: -0.0133 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5042 -22.3125 69.1644 REMARK 3 T TENSOR REMARK 3 T11: 0.1752 T22: 0.1698 REMARK 3 T33: 0.1816 T12: 0.0089 REMARK 3 T13: 0.0087 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.0358 L22: 0.2569 REMARK 3 L33: 0.2675 L12: 0.0610 REMARK 3 L13: 0.0031 L23: 0.0858 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.0071 S13: 0.0058 REMARK 3 S21: 0.0177 S22: 0.0400 S23: 0.0148 REMARK 3 S31: 0.0480 S32: 0.0401 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 485 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1664 -19.7017 77.5313 REMARK 3 T TENSOR REMARK 3 T11: 0.2165 T22: 0.2011 REMARK 3 T33: 0.2307 T12: -0.0143 REMARK 3 T13: -0.0261 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.1403 L22: 0.1646 REMARK 3 L33: 0.1987 L12: -0.1700 REMARK 3 L13: -0.0611 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.1437 S12: -0.1352 S13: 0.3565 REMARK 3 S21: 0.0590 S22: 0.0964 S23: -0.0536 REMARK 3 S31: -0.1462 S32: 0.1156 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 514 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9583 -28.4091 82.0269 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.2369 REMARK 3 T33: 0.2150 T12: 0.0102 REMARK 3 T13: -0.0225 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0638 L22: 0.0978 REMARK 3 L33: 0.0395 L12: 0.0014 REMARK 3 L13: 0.0539 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.1123 S13: -0.0237 REMARK 3 S21: 0.1543 S22: -0.1038 S23: -0.2076 REMARK 3 S31: 0.0463 S32: 0.0957 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5337 -21.2837 46.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.2045 REMARK 3 T33: 0.1663 T12: -0.0160 REMARK 3 T13: -0.0014 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.4664 L22: 0.4892 REMARK 3 L33: 0.1437 L12: 0.2917 REMARK 3 L13: -0.1574 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0222 S13: 0.0218 REMARK 3 S21: -0.0268 S22: 0.0501 S23: -0.0043 REMARK 3 S31: -0.0427 S32: 0.0698 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6399 -7.9786 42.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.1784 REMARK 3 T33: 0.1657 T12: -0.0348 REMARK 3 T13: -0.0005 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.3893 L22: 0.2319 REMARK 3 L33: 0.3767 L12: 0.0818 REMARK 3 L13: -0.0651 L23: 0.3233 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.0546 S13: 0.0352 REMARK 3 S21: -0.1073 S22: 0.0274 S23: -0.0625 REMARK 3 S31: -0.1193 S32: 0.0051 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 401 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8012 -23.4573 35.1306 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.2729 REMARK 3 T33: 0.2196 T12: -0.0207 REMARK 3 T13: 0.0485 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.0149 L22: 0.0581 REMARK 3 L33: 0.0639 L12: -0.0370 REMARK 3 L13: 0.0340 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.0935 S13: 0.0010 REMARK 3 S21: -0.1443 S22: 0.0273 S23: -0.0915 REMARK 3 S31: 0.0425 S32: 0.1387 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 421 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9306 -38.3510 45.3338 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.1831 REMARK 3 T33: 0.1818 T12: 0.0034 REMARK 3 T13: 0.0042 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.3989 L22: 0.6421 REMARK 3 L33: 0.5357 L12: -0.1946 REMARK 3 L13: -0.1262 L23: 0.0733 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.0295 S13: -0.0835 REMARK 3 S21: -0.0323 S22: 0.0503 S23: 0.0375 REMARK 3 S31: 0.0534 S32: 0.0317 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 39.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.620 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MG FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.97500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 222 REMARK 465 GLY B 223 REMARK 465 GLU B 372 REMARK 465 IAS B 373 REMARK 465 GLY B 392 REMARK 465 SER B 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 222 OG1 CG2 REMARK 470 ARG A 297 NE CZ NH1 NH2 REMARK 470 LYS A 339 CD CE NZ REMARK 470 ASP A 370 CG OD1 OD2 REMARK 470 THR A 371 OG1 CG2 REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 ARG A 484 NE CZ NH1 NH2 REMARK 470 LYS A 493 NZ REMARK 470 ASN A 512 CG OD1 ND2 REMARK 470 GLN A 523 OE1 NE2 REMARK 470 ARG B 297 CD NE CZ NH1 NH2 REMARK 470 ASP B 370 CG OD1 OD2 REMARK 470 THR B 371 OG1 CG2 REMARK 470 GLN B 523 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 329 OD1 ASP B 391 1.57 REMARK 500 O HOH A 702 O HOH A 825 1.83 REMARK 500 O HOH A 789 O HOH A 900 1.84 REMARK 500 O IAS A 373 O HOH A 701 1.96 REMARK 500 O HOH A 780 O HOH A 860 2.00 REMARK 500 OD1 ASN B 512 O HOH B 701 2.02 REMARK 500 OE2 GLU A 376 O HOH A 702 2.07 REMARK 500 OG1 THR B 526 O HOH B 702 2.12 REMARK 500 O HOH B 745 O HOH B 996 2.16 REMARK 500 O HOH A 849 O HOH A 901 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 260 52.19 -140.10 REMARK 500 SER A 296 173.45 -54.42 REMARK 500 SER A 442 141.49 177.13 REMARK 500 GLN B 260 51.07 -141.33 REMARK 500 SER B 442 140.19 177.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1021 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 528 O REMARK 620 2 HOH B 790 O 121.1 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OO6 RELATED DB: PDB REMARK 900 PROTEIN WITHOUT DEAMINATION DBREF 6H9V A 225 530 UNP B5BTR7 B5BTR7_9CALI 225 530 DBREF 6H9V B 225 530 UNP B5BTR7 B5BTR7_9CALI 225 530 SEQADV 6H9V THR A 222 UNP B5BTR7 EXPRESSION TAG SEQADV 6H9V GLY A 223 UNP B5BTR7 EXPRESSION TAG SEQADV 6H9V SER A 224 UNP B5BTR7 EXPRESSION TAG SEQADV 6H9V IAS A 373 UNP B5BTR7 ASN 373 CONFLICT SEQADV 6H9V THR B 222 UNP B5BTR7 EXPRESSION TAG SEQADV 6H9V GLY B 223 UNP B5BTR7 EXPRESSION TAG SEQADV 6H9V SER B 224 UNP B5BTR7 EXPRESSION TAG SEQADV 6H9V IAS B 373 UNP B5BTR7 ASN 373 CONFLICT SEQRES 1 A 309 THR GLY SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL SEQRES 2 A 309 GLU GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU SEQRES 3 A 309 LYS LEU PHE THR GLY PRO SER GLY ALA PHE VAL VAL GLN SEQRES 4 A 309 PRO GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU SEQRES 5 A 309 GLY THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE SEQRES 6 A 309 ARG GLY ASP VAL THR HIS ILE ALA GLY SER ARG ASN TYR SEQRES 7 A 309 THR MET ASN LEU ALA SER LEU ASN TRP ASN ASN TYR ASP SEQRES 8 A 309 PRO THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP SEQRES 9 A 309 PHE VAL GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR SEQRES 10 A 309 LYS GLY ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL SEQRES 11 A 309 TYR THR GLY SER ALA PRO PHE THR PRO LYS LEU GLY SER SEQRES 12 A 309 VAL GLN PHE SER THR ASP THR GLU IAS ASP PHE GLU THR SEQRES 13 A 309 HIS GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN SEQRES 14 A 309 ASP GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP SEQRES 15 A 309 VAL LEU PRO SER TYR SER GLY ARG ASN VAL HIS ASN VAL SEQRES 16 A 309 HIS LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU SEQRES 17 A 309 GLN LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER SEQRES 18 A 309 GLY TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN SEQRES 19 A 309 GLU TRP VAL GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA SEQRES 20 A 309 GLN SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP SEQRES 21 A 309 THR GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER SEQRES 22 A 309 GLY TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU SEQRES 23 A 309 VAL ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP SEQRES 24 A 309 VAL ASN GLN PHE TYR THR LEU ALA PRO MET SEQRES 1 B 309 THR GLY SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL SEQRES 2 B 309 GLU GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU SEQRES 3 B 309 LYS LEU PHE THR GLY PRO SER GLY ALA PHE VAL VAL GLN SEQRES 4 B 309 PRO GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU SEQRES 5 B 309 GLY THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE SEQRES 6 B 309 ARG GLY ASP VAL THR HIS ILE ALA GLY SER ARG ASN TYR SEQRES 7 B 309 THR MET ASN LEU ALA SER LEU ASN TRP ASN ASN TYR ASP SEQRES 8 B 309 PRO THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP SEQRES 9 B 309 PHE VAL GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR SEQRES 10 B 309 LYS GLY ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL SEQRES 11 B 309 TYR THR GLY SER ALA PRO PHE THR PRO LYS LEU GLY SER SEQRES 12 B 309 VAL GLN PHE SER THR ASP THR GLU IAS ASP PHE GLU THR SEQRES 13 B 309 HIS GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN SEQRES 14 B 309 ASP GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP SEQRES 15 B 309 VAL LEU PRO SER TYR SER GLY ARG ASN VAL HIS ASN VAL SEQRES 16 B 309 HIS LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU SEQRES 17 B 309 GLN LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER SEQRES 18 B 309 GLY TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN SEQRES 19 B 309 GLU TRP VAL GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA SEQRES 20 B 309 GLN SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP SEQRES 21 B 309 THR GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER SEQRES 22 B 309 GLY TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU SEQRES 23 B 309 VAL ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP SEQRES 24 B 309 VAL ASN GLN PHE TYR THR LEU ALA PRO MET MODRES 6H9V IAS A 373 ASN MODIFIED RESIDUE HET IAS A 373 13 HET MFU A 601 26 HET MG A 602 1 HET MFU B 601 26 HET MG B 602 1 HETNAM IAS BETA-L-ASPARTIC ACID HETNAM MFU METHYL ALPHA-L-FUCOPYRANOSIDE HETNAM MG MAGNESIUM ION HETSYN IAS L-ASPARTIC ACID FORMUL 1 IAS C4 H7 N O4 FORMUL 3 MFU 2(C7 H14 O5) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *616(H2 O) HELIX 1 AA1 THR A 233 MET A 237 5 5 HELIX 2 AA2 SER A 279 ILE A 283 5 5 HELIX 3 AA3 THR A 359 LEU A 362 5 4 HELIX 4 AA4 PRO A 454 ALA A 465 1 12 HELIX 5 AA5 THR B 233 MET B 237 5 5 HELIX 6 AA6 THR B 359 LEU B 362 5 4 HELIX 7 AA7 PRO B 454 ALA B 465 1 12 SHEET 1 A 3 LYS A 248 THR A 251 0 SHEET 2 A 3 LEU A 432 THR A 437 -1 SHEET 3 A 3 ASP A 448 CYS A 451 -1 SHEET 1 B 6 SER A 364 SER A 368 0 SHEET 2 B 6 ASN A 298 LEU A 303 -1 SHEET 3 B 6 PHE A 286 THR A 291 -1 SHEET 4 B 6 THR A 381 ILE A 389 -1 SHEET 5 B 6 LYS A 329 THR A 337 -1 SHEET 6 B 6 THR A 344 TYR A 352 -1 SHEET 1 C 5 GLU A 429 LEU A 431 0 SHEET 2 C 5 TYR A 496 ALA A 500 -1 SHEET 3 C 5 VAL A 485 HIS A 492 -1 SHEET 4 C 5 VAL A 472 VAL A 478 -1 SHEET 5 C 5 TYR A 514 VAL A 521 -1 SHEET 1 D 3 LYS B 248 THR B 251 0 SHEET 2 D 3 LEU B 432 THR B 437 -1 SHEET 3 D 3 ASP B 448 CYS B 451 -1 SHEET 1 E 6 SER B 364 SER B 368 0 SHEET 2 E 6 ASN B 298 LEU B 303 -1 SHEET 3 E 6 PHE B 286 HIS B 292 -1 SHEET 4 E 6 THR B 381 VAL B 388 -1 SHEET 5 E 6 LYS B 329 THR B 337 -1 SHEET 6 E 6 THR B 344 TYR B 352 -1 SHEET 1 F 5 GLU B 429 LEU B 431 0 SHEET 2 F 5 TYR B 496 ALA B 500 -1 SHEET 3 F 5 ARG B 484 HIS B 492 -1 SHEET 4 F 5 VAL B 472 ASN B 479 -1 SHEET 5 F 5 TYR B 514 VAL B 521 -1 LINK C GLU A 372 N IAS A 373 1555 1555 1.32 LINK CG IAS A 373 N ASP A 374 1555 1555 1.48 LINK O ALA A 528 MG MG A 602 1555 1555 2.77 LINK O ALA B 528 MG MG B 602 1555 1555 2.74 LINK MG MG B 602 O HOH B 790 1555 1555 2.94 CISPEP 1 GLU A 399 PRO A 400 0 -7.84 CISPEP 2 GLU B 399 PRO B 400 0 -9.29 CRYST1 54.290 83.950 65.130 90.00 95.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018420 0.000000 0.001864 0.00000 SCALE2 0.000000 0.011912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015432 0.00000