HEADER HYDROLASE 07-AUG-18 6HAA TITLE STRUCTURE OF A COVALENT COMPLEX OF ENDO-XYLOGLUCANASE FROM CELLVIBRIO TITLE 2 JAPONICUS AFTER REACTING WITH XXXG(2F)-BETA-DNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE, PUTATIVE, CEL5D; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.151; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS FLUORESCENS SUBSP. CELLULOSA; SOURCE 4 ORGANISM_TAXID: 498211; SOURCE 5 STRAIN: UEDA107; SOURCE 6 GENE: CEL5D, CJA_3010; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSIDE HYDROLASE, XYLOGLUCAN, COVALENT INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.OFFEN,G.J.DAVIES REVDAT 5 13-NOV-24 6HAA 1 REMARK REVDAT 4 17-JAN-24 6HAA 1 HETSYN LINK REVDAT 3 29-JUL-20 6HAA 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 05-DEC-18 6HAA 1 TITLE COMPND JRNL REVDAT 1 03-OCT-18 6HAA 0 JRNL AUTH N.JAIN,M.A.ATTIA,W.A.OFFEN,G.J.DAVIES,H.BRUMER JRNL TITL SYNTHESIS AND APPLICATION OF A HIGHLY BRANCHED, JRNL TITL 2 MECHANISM-BASED 2-DEOXY-2-FLUORO-OLIGOSACCHARIDE INHIBITOR JRNL TITL 3 OF ENDO-XYLOGLUCANASES. JRNL REF ORG. BIOMOL. CHEM. V. 16 8732 2018 JRNL REFN ESSN 1477-0539 JRNL PMID 30387796 JRNL DOI 10.1039/C8OB02250J REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 89231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 221 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 2.12000 REMARK 3 B33 (A**2) : -2.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6248 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5447 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8517 ; 1.917 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12643 ; 1.118 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 770 ; 6.766 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;39.189 ;24.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 935 ;13.912 ;15.053 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 951 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6903 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1282 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2988 ; 3.781 ; 3.909 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2987 ; 3.778 ; 3.909 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3739 ; 4.578 ; 5.859 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3740 ; 4.577 ; 5.860 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3260 ; 3.732 ; 3.994 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3260 ; 3.730 ; 3.994 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4778 ; 4.862 ; 5.930 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7063 ; 6.045 ;45.093 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7064 ; 6.046 ;45.099 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS UNMODELLED DENSITY NEAR THE REMARK 3 SIDE CHAINS OF GLN172 AND TYR173 IN BOTH MOLECULES, AND NEAR TO REMARK 3 O6 OF THE TERMINAL BGC OF THE LIGAND IN MOLECULE A. REMARK 4 REMARK 4 6HAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200008273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 33.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5OYC.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, MES, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.33850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.33850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 73 REMARK 465 GLY A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 465 SER A 83 REMARK 465 SER A 84 REMARK 465 GLY A 85 REMARK 465 LEU A 86 REMARK 465 VAL A 87 REMARK 465 PRO A 88 REMARK 465 ARG A 89 REMARK 465 GLY A 90 REMARK 465 SER A 91 REMARK 465 HIS A 92 REMARK 465 MET A 93 REMARK 465 ALA A 94 REMARK 465 SER A 95 REMARK 465 GLY A 466 REMARK 465 ALA A 467 REMARK 465 GLN A 468 REMARK 465 MET B 73 REMARK 465 GLY B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 HIS B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 HIS B 82 REMARK 465 SER B 83 REMARK 465 SER B 84 REMARK 465 GLY B 85 REMARK 465 LEU B 86 REMARK 465 VAL B 87 REMARK 465 PRO B 88 REMARK 465 ARG B 89 REMARK 465 GLY B 90 REMARK 465 SER B 91 REMARK 465 HIS B 92 REMARK 465 MET B 93 REMARK 465 ALA B 94 REMARK 465 SER B 95 REMARK 465 GLY B 466 REMARK 465 ALA B 467 REMARK 465 GLN B 468 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 LYS A 301 CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 ASP A 355 CG OD1 OD2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 GLN A 370 CG CD OE1 NE2 REMARK 470 THR A 400 OG1 CG2 REMARK 470 ASP A 402 CG OD1 OD2 REMARK 470 THR B 111 OG1 CG2 REMARK 470 LYS B 123 NZ REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 SER B 338 OG REMARK 470 LYS B 341 CG CD CE NZ REMARK 470 GLU B 348 CG CD OE1 OE2 REMARK 470 THR B 353 OG1 CG2 REMARK 470 GLN B 370 CD OE1 NE2 REMARK 470 LEU B 462 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 425 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 425 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 447 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 355 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 102 69.67 -101.89 REMARK 500 THR A 133 -90.31 -130.64 REMARK 500 TRP A 170 -46.51 -141.02 REMARK 500 ASN A 254 -77.91 -118.25 REMARK 500 VAL A 296 19.30 51.87 REMARK 500 THR A 297 39.56 36.32 REMARK 500 THR A 307 -65.27 -108.73 REMARK 500 ASP A 355 74.05 -108.62 REMARK 500 PHE A 379 -65.84 -121.98 REMARK 500 SER A 392 145.88 -179.91 REMARK 500 ASP A 438 -169.24 -115.74 REMARK 500 ASN B 102 76.22 -100.52 REMARK 500 SER B 104 46.57 -150.52 REMARK 500 PRO B 105 91.06 -60.69 REMARK 500 PRO B 108 72.40 -50.53 REMARK 500 THR B 133 -95.12 -130.57 REMARK 500 TRP B 170 -48.23 -138.48 REMARK 500 ASN B 254 -82.71 -114.64 REMARK 500 VAL B 296 16.82 55.53 REMARK 500 THR B 297 39.78 34.89 REMARK 500 THR B 354 -116.99 -79.29 REMARK 500 THR B 354 -74.86 -112.64 REMARK 500 ASP B 355 64.47 -43.94 REMARK 500 ASP B 355 36.88 -81.00 REMARK 500 GLU B 357 -30.89 -28.60 REMARK 500 PHE B 379 -61.00 -120.56 REMARK 500 SER B 392 140.30 179.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 6HAA A 96 468 UNP B3PD52 B3PD52_CELJU 96 468 DBREF 6HAA B 96 468 UNP B3PD52 B3PD52_CELJU 96 468 SEQADV 6HAA MET A 73 UNP B3PD52 INITIATING METHIONINE SEQADV 6HAA GLY A 74 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER A 75 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER A 76 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 77 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 78 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 79 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 80 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 81 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 82 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER A 83 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER A 84 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA GLY A 85 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA LEU A 86 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA VAL A 87 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA PRO A 88 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA ARG A 89 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA GLY A 90 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER A 91 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS A 92 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA MET A 93 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA ALA A 94 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER A 95 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA ALA A 255 UNP B3PD52 GLU 255 ENGINEERED MUTATION SEQADV 6HAA MET B 73 UNP B3PD52 INITIATING METHIONINE SEQADV 6HAA GLY B 74 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER B 75 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER B 76 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 77 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 78 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 79 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 80 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 81 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 82 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER B 83 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER B 84 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA GLY B 85 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA LEU B 86 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA VAL B 87 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA PRO B 88 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA ARG B 89 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA GLY B 90 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER B 91 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA HIS B 92 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA MET B 93 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA ALA B 94 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA SER B 95 UNP B3PD52 EXPRESSION TAG SEQADV 6HAA ALA B 255 UNP B3PD52 GLU 255 ENGINEERED MUTATION SEQRES 1 A 396 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 396 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY LEU TYR SEQRES 3 A 396 PRO SER TYR ASN THR SER PRO ALA ALA PRO ASP SER THR SEQRES 4 A 396 GLY MET GLN SER THR ALA VAL GLN LEU ALA GLY LYS ILE SEQRES 5 A 396 ARG LEU GLY TRP ASN ILE GLY ASN THR MET GLU ALA ILE SEQRES 6 A 396 GLY GLY GLU THR ALA TRP GLY ASN PRO MET VAL SER ASN SEQRES 7 A 396 GLU LEU LEU LYS LEU VAL LYS ASP SER GLY PHE ASP ALA SEQRES 8 A 396 VAL ARG ILE PRO VAL ALA TRP ASP GLN TYR ALA ASN GLN SEQRES 9 A 396 GLU SER ALA GLU ILE SER ALA ALA TRP LEU ASN ARG VAL SEQRES 10 A 396 LYS GLN VAL VAL GLN MET ALA ILE ASP ASN GLU LEU TYR SEQRES 11 A 396 VAL LEU ILE ASN ILE HIS TRP ASP GLY GLY TRP LEU GLU SEQRES 12 A 396 ASN ASN ILE THR PRO ALA LYS LYS ASP GLU ASN ASN ALA SEQRES 13 A 396 LYS GLN LYS ALA PHE TRP GLU GLN ILE ALA THR HIS LEU SEQRES 14 A 396 ARG ASP PHE ASP GLU HIS LEU LEU PHE ALA GLY THR ASN SEQRES 15 A 396 ALA PRO ASN ALA GLU ASN ALA GLU GLN MET ASP VAL LEU SEQRES 16 A 396 ASN SER TYR LEU GLN THR PHE VAL ASP ALA VAL ARG SER SEQRES 17 A 396 THR GLY GLY LYS ASN ALA TYR ARG VAL LEU VAL LEU GLN SEQRES 18 A 396 GLY PRO VAL THR ASP ILE GLU LYS THR ASN GLU LEU TRP SEQRES 19 A 396 THR HIS MET PRO ALA ASP THR ALA THR ASP ARG LEU MET SEQRES 20 A 396 ALA GLU VAL HIS PHE TYR THR PRO TYR ASN PHE ALA LEU SEQRES 21 A 396 MET ARG GLN ASP GLU SER TRP GLY LYS GLN PHE TYR TYR SEQRES 22 A 396 TRP GLY GLU GLY PHE LEU SER THR THR ASP THR GLU ARG SEQRES 23 A 396 ASN PRO THR TRP GLY GLU GLU ALA THR ILE ASP GLN LEU SEQRES 24 A 396 PHE ASP LEU MET LYS THR LYS PHE VAL ASP GLN GLY ILE SEQRES 25 A 396 PRO VAL VAL LEU GLY GLU PHE SER ALA MET ARG ARG THR SEQRES 26 A 396 ASN LEU THR GLY ASP ALA LEU THR LEU HIS LEU ALA GLY SEQRES 27 A 396 ARG ALA TYR TYR HIS LYS TYR VAL THR GLN GLN ALA LEU SEQRES 28 A 396 ALA ARG GLY LEU LEU PRO PHE TYR TRP ASP ASN GLY GLY SEQRES 29 A 396 ASN ASP ASN PHE SER SER GLY ILE PHE ASN ARG GLN GLN SEQRES 30 A 396 ASN THR VAL PHE ASP GLN GLN VAL LEU ASP ALA LEU LEU SEQRES 31 A 396 GLU GLY ALA GLY ALA GLN SEQRES 1 B 396 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 396 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY LEU TYR SEQRES 3 B 396 PRO SER TYR ASN THR SER PRO ALA ALA PRO ASP SER THR SEQRES 4 B 396 GLY MET GLN SER THR ALA VAL GLN LEU ALA GLY LYS ILE SEQRES 5 B 396 ARG LEU GLY TRP ASN ILE GLY ASN THR MET GLU ALA ILE SEQRES 6 B 396 GLY GLY GLU THR ALA TRP GLY ASN PRO MET VAL SER ASN SEQRES 7 B 396 GLU LEU LEU LYS LEU VAL LYS ASP SER GLY PHE ASP ALA SEQRES 8 B 396 VAL ARG ILE PRO VAL ALA TRP ASP GLN TYR ALA ASN GLN SEQRES 9 B 396 GLU SER ALA GLU ILE SER ALA ALA TRP LEU ASN ARG VAL SEQRES 10 B 396 LYS GLN VAL VAL GLN MET ALA ILE ASP ASN GLU LEU TYR SEQRES 11 B 396 VAL LEU ILE ASN ILE HIS TRP ASP GLY GLY TRP LEU GLU SEQRES 12 B 396 ASN ASN ILE THR PRO ALA LYS LYS ASP GLU ASN ASN ALA SEQRES 13 B 396 LYS GLN LYS ALA PHE TRP GLU GLN ILE ALA THR HIS LEU SEQRES 14 B 396 ARG ASP PHE ASP GLU HIS LEU LEU PHE ALA GLY THR ASN SEQRES 15 B 396 ALA PRO ASN ALA GLU ASN ALA GLU GLN MET ASP VAL LEU SEQRES 16 B 396 ASN SER TYR LEU GLN THR PHE VAL ASP ALA VAL ARG SER SEQRES 17 B 396 THR GLY GLY LYS ASN ALA TYR ARG VAL LEU VAL LEU GLN SEQRES 18 B 396 GLY PRO VAL THR ASP ILE GLU LYS THR ASN GLU LEU TRP SEQRES 19 B 396 THR HIS MET PRO ALA ASP THR ALA THR ASP ARG LEU MET SEQRES 20 B 396 ALA GLU VAL HIS PHE TYR THR PRO TYR ASN PHE ALA LEU SEQRES 21 B 396 MET ARG GLN ASP GLU SER TRP GLY LYS GLN PHE TYR TYR SEQRES 22 B 396 TRP GLY GLU GLY PHE LEU SER THR THR ASP THR GLU ARG SEQRES 23 B 396 ASN PRO THR TRP GLY GLU GLU ALA THR ILE ASP GLN LEU SEQRES 24 B 396 PHE ASP LEU MET LYS THR LYS PHE VAL ASP GLN GLY ILE SEQRES 25 B 396 PRO VAL VAL LEU GLY GLU PHE SER ALA MET ARG ARG THR SEQRES 26 B 396 ASN LEU THR GLY ASP ALA LEU THR LEU HIS LEU ALA GLY SEQRES 27 B 396 ARG ALA TYR TYR HIS LYS TYR VAL THR GLN GLN ALA LEU SEQRES 28 B 396 ALA ARG GLY LEU LEU PRO PHE TYR TRP ASP ASN GLY GLY SEQRES 29 B 396 ASN ASP ASN PHE SER SER GLY ILE PHE ASN ARG GLN GLN SEQRES 30 B 396 ASN THR VAL PHE ASP GLN GLN VAL LEU ASP ALA LEU LEU SEQRES 31 B 396 GLU GLY ALA GLY ALA GLN HET G2F C 1 11 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET XYS C 5 9 HET XYS C 6 9 HET G2F D 1 11 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET XYS D 5 9 HET XYS D 6 9 HET XYS D 7 9 HET GOL A1007 6 HET GOL A1008 6 HET SO4 A1009 5 HET PGE A1010 10 HET PGE A1011 10 HET MES A1012 12 HET GOL B1008 6 HET SO4 B1009 5 HET MES B1010 12 HET 1PE B1011 16 HETNAM G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 G2F GLUCOSE; 2-DEOXY-2-FLUORO-GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 3 G2F 2(C6 H11 F O5) FORMUL 3 BGC 6(C6 H12 O6) FORMUL 3 XYS 5(C5 H10 O5) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 7 SO4 2(O4 S 2-) FORMUL 8 PGE 2(C6 H14 O4) FORMUL 10 MES 2(C6 H13 N O4 S) FORMUL 14 1PE C10 H22 O6 FORMUL 15 HOH *357(H2 O) HELIX 1 AA1 THR A 116 ILE A 124 1 9 HELIX 2 AA2 SER A 149 GLY A 160 1 12 HELIX 3 AA3 TRP A 170 ALA A 174 5 5 HELIX 4 AA4 SER A 182 ASN A 199 1 18 HELIX 5 AA5 TRP A 209 TRP A 213 5 5 HELIX 6 AA6 THR A 219 LEU A 241 1 23 HELIX 7 AA7 ASN A 260 THR A 281 1 22 HELIX 8 AA8 GLY A 282 TYR A 287 5 6 HELIX 9 AA9 PRO A 295 THR A 297 5 3 HELIX 10 AB1 ASP A 298 TRP A 306 1 9 HELIX 11 AB2 PRO A 327 LEU A 332 1 6 HELIX 12 AB3 ASP A 355 ASN A 359 5 5 HELIX 13 AB4 GLU A 364 PHE A 379 1 16 HELIX 14 AB5 VAL A 380 GLY A 383 5 4 HELIX 15 AB6 THR A 400 ARG A 425 1 26 HELIX 16 AB7 ASP A 454 ALA A 465 1 12 HELIX 17 AB8 THR B 116 LYS B 123 1 8 HELIX 18 AB9 SER B 149 GLY B 160 1 12 HELIX 19 AC1 TRP B 170 ALA B 174 5 5 HELIX 20 AC2 SER B 182 ASN B 199 1 18 HELIX 21 AC3 TRP B 209 TRP B 213 5 5 HELIX 22 AC4 THR B 219 LEU B 241 1 23 HELIX 23 AC5 ASN B 260 SER B 280 1 21 HELIX 24 AC6 THR B 281 TYR B 287 5 7 HELIX 25 AC7 PRO B 295 THR B 297 5 3 HELIX 26 AC8 ASP B 298 TRP B 306 1 9 HELIX 27 AC9 PRO B 327 LEU B 332 1 6 HELIX 28 AD1 ASP B 355 ASN B 359 5 5 HELIX 29 AD2 GLU B 364 PHE B 379 1 16 HELIX 30 AD3 VAL B 380 GLY B 383 5 4 HELIX 31 AD4 GLY B 401 ALA B 424 1 24 HELIX 32 AD5 ASP B 454 ALA B 465 1 12 SHEET 1 AA1 9 GLY A 127 ILE A 130 0 SHEET 2 AA1 9 ALA A 163 ILE A 166 1 O ARG A 165 N ILE A 130 SHEET 3 AA1 9 TYR A 202 ILE A 205 1 O LEU A 204 N ILE A 166 SHEET 4 AA1 9 LEU A 248 ALA A 251 1 O LEU A 249 N VAL A 203 SHEET 5 AA1 9 LEU A 290 GLN A 293 1 O VAL A 291 N PHE A 250 SHEET 6 AA1 9 LEU A 318 PHE A 324 1 O MET A 319 N LEU A 292 SHEET 7 AA1 9 VAL A 386 PHE A 391 1 O VAL A 387 N ALA A 320 SHEET 8 AA1 9 LEU A 427 ASP A 433 1 O TRP A 432 N PHE A 391 SHEET 9 AA1 9 GLY A 127 ILE A 130 1 N ASN A 129 O TYR A 431 SHEET 1 AA2 2 PHE A 445 ASN A 446 0 SHEET 2 AA2 2 THR A 451 VAL A 452 -1 O THR A 451 N ASN A 446 SHEET 1 AA3 9 GLY B 127 ASN B 129 0 SHEET 2 AA3 9 ALA B 163 ILE B 166 1 O ALA B 163 N TRP B 128 SHEET 3 AA3 9 TYR B 202 ASN B 206 1 O TYR B 202 N VAL B 164 SHEET 4 AA3 9 LEU B 248 ALA B 251 1 O LEU B 249 N VAL B 203 SHEET 5 AA3 9 LEU B 290 GLN B 293 1 O VAL B 291 N PHE B 250 SHEET 6 AA3 9 LEU B 318 VAL B 322 1 O MET B 319 N LEU B 290 SHEET 7 AA3 9 VAL B 386 PHE B 391 1 O VAL B 387 N ALA B 320 SHEET 8 AA3 9 LEU B 427 TYR B 431 1 O PHE B 430 N LEU B 388 SHEET 9 AA3 9 GLY B 127 ASN B 129 1 N ASN B 129 O TYR B 431 SHEET 1 AA4 2 PHE B 445 ASN B 446 0 SHEET 2 AA4 2 THR B 451 VAL B 452 -1 O THR B 451 N ASN B 446 LINK OE1 GLU A 390 C1 G2F C 1 1555 1555 1.41 LINK OE1 GLU B 390 C1 G2F D 1 1555 1555 1.47 LINK O4 G2F C 1 C1 BGC C 2 1555 1555 1.41 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.40 LINK O6 BGC C 2 C1 XYS C 6 1555 1555 1.40 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.42 LINK O6 BGC C 3 C1 XYS C 5 1555 1555 1.45 LINK O4 G2F D 1 C1 BGC D 2 1555 1555 1.46 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.42 LINK O6 BGC D 2 C1 XYS D 7 1555 1555 1.40 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.42 LINK O6 BGC D 3 C1 XYS D 6 1555 1555 1.42 LINK O6 BGC D 4 C1 XYS D 5 1555 1555 1.46 CISPEP 1 THR A 326 PRO A 327 0 -13.30 CISPEP 2 THR B 326 PRO B 327 0 -4.80 CRYST1 56.058 97.206 156.677 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017839 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006383 0.00000