HEADER TRANSFERASE 07-AUG-18 6HAD TITLE HUMAN TRANSKETOLASE VARIANT E160Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSKETOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.2.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THIAMIN DIPHOSPHATE, TPP, THDP, ENZYME, CATALYSIS, SUGAR METABOLISM, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI,V.SAUTNER,K.TITTMANN REVDAT 6 15-MAY-24 6HAD 1 REMARK REVDAT 5 04-AUG-21 6HAD 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 09-OCT-19 6HAD 1 JRNL REVDAT 3 02-OCT-19 6HAD 1 JRNL REVDAT 2 18-SEP-19 6HAD 1 JRNL REVDAT 1 21-AUG-19 6HAD 0 JRNL AUTH S.DAI,L.M.FUNK,F.R.VON PAPPENHEIM,V.SAUTNER,M.PAULIKAT, JRNL AUTH 2 B.SCHRODER,J.URANGA,R.A.MATA,K.TITTMANN JRNL TITL LOW-BARRIER HYDROGEN BONDS IN ENZYME COOPERATIVITY. JRNL REF NATURE V. 573 609 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 31534226 JRNL DOI 10.1038/S41586-019-1581-9 REMARK 2 REMARK 2 RESOLUTION. 1.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 263562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7811 - 3.2311 0.99 8841 273 0.1179 0.1253 REMARK 3 2 3.2311 - 2.5647 0.99 8739 270 0.1174 0.1249 REMARK 3 3 2.5647 - 2.2405 1.00 8747 271 0.1028 0.1184 REMARK 3 4 2.2405 - 2.0357 0.99 8692 269 0.0964 0.1074 REMARK 3 5 2.0357 - 1.8898 1.00 8729 270 0.0916 0.1165 REMARK 3 6 1.8898 - 1.7783 1.00 8737 270 0.0860 0.1138 REMARK 3 7 1.7783 - 1.6893 1.00 8758 271 0.0810 0.0969 REMARK 3 8 1.6893 - 1.6157 1.00 8713 269 0.0772 0.1056 REMARK 3 9 1.6157 - 1.5535 1.00 8693 269 0.0757 0.1007 REMARK 3 10 1.5535 - 1.4999 0.99 8656 268 0.0779 0.1105 REMARK 3 11 1.4999 - 1.4530 1.00 8707 269 0.0816 0.1139 REMARK 3 12 1.4530 - 1.4115 1.00 8668 268 0.0891 0.1173 REMARK 3 13 1.4115 - 1.3743 1.00 8717 270 0.0945 0.1301 REMARK 3 14 1.3743 - 1.3408 0.99 8696 269 0.0996 0.1258 REMARK 3 15 1.3408 - 1.3103 0.99 8587 265 0.1028 0.1277 REMARK 3 16 1.3103 - 1.2824 0.99 8614 267 0.1103 0.1425 REMARK 3 17 1.2824 - 1.2568 0.99 8604 266 0.1128 0.1392 REMARK 3 18 1.2568 - 1.2331 0.98 8542 264 0.1245 0.1556 REMARK 3 19 1.2331 - 1.2110 0.98 8531 264 0.1290 0.1711 REMARK 3 20 1.2110 - 1.1905 0.97 8453 261 0.1357 0.1827 REMARK 3 21 1.1905 - 1.1713 0.97 8421 261 0.1427 0.1701 REMARK 3 22 1.1713 - 1.1533 0.96 8357 258 0.1514 0.1922 REMARK 3 23 1.1533 - 1.1363 0.95 8305 257 0.1530 0.1713 REMARK 3 24 1.1363 - 1.1203 0.94 8192 254 0.1637 0.1649 REMARK 3 25 1.1203 - 1.1052 0.94 8168 252 0.1787 0.1972 REMARK 3 26 1.1052 - 1.0908 0.94 8200 254 0.1932 0.2054 REMARK 3 27 1.0908 - 1.0772 0.94 8258 255 0.2190 0.2374 REMARK 3 28 1.0772 - 1.0642 0.94 8144 252 0.2266 0.2425 REMARK 3 29 1.0642 - 1.0518 0.93 8144 250 0.2430 0.2551 REMARK 3 30 1.0518 - 1.0400 0.92 8045 248 0.2583 0.2975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5346 REMARK 3 ANGLE : 1.476 7321 REMARK 3 CHIRALITY : 0.091 809 REMARK 3 PLANARITY : 0.009 979 REMARK 3 DIHEDRAL : 14.069 2062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.85 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 263585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.040 REMARK 200 RESOLUTION RANGE LOW (A) : 42.745 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.420 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.96 REMARK 200 R MERGE FOR SHELL (I) : 0.86300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.5-15% PEG6000 (W/V) 4% PEG400 (V/V) REMARK 280 2% GLYCEROL (V/V), PH 7.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.85500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1091 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 LEU A 624 REMARK 465 VAL A 625 REMARK 465 PRO A 626 REMARK 465 ARG A 627 REMARK 465 GLY A 628 REMARK 465 SER A 629 REMARK 465 LEU A 630 REMARK 465 GLU A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 465 HIS A 636 REMARK 465 HIS A 637 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 386 CB CYS A 386 SG -0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 594 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 594 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 54 -54.08 -144.06 REMARK 500 PHE A 142 -60.91 -105.89 REMARK 500 ARG A 186 -30.81 82.48 REMARK 500 GLN A 196 -127.02 47.27 REMARK 500 TYR A 363 -169.70 65.84 REMARK 500 ALA A 365 71.12 -165.91 REMARK 500 THR A 442 -5.43 74.41 REMARK 500 PHE A 535 -63.91 73.03 REMARK 500 PRO A 593 -158.54 -80.37 REMARK 500 PRO A 593 -164.47 -77.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1496 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1497 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD1 REMARK 620 2 ASN A 185 OD1 97.4 REMARK 620 3 LEU A 187 O 109.3 89.6 REMARK 620 4 TPP A 704 O2A 85.4 170.9 97.6 REMARK 620 5 TPP A 704 O1B 160.3 92.2 87.8 82.7 REMARK 620 6 HOH A 926 O 81.3 82.6 167.7 89.3 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD1 REMARK 620 2 ASN A 185 OD1 96.7 REMARK 620 3 LEU A 187 O 112.4 88.0 REMARK 620 4 TPP A 704 O2A 88.7 167.4 100.5 REMARK 620 5 TPP A 704 O1B 160.2 88.5 86.8 82.8 REMARK 620 6 HOH A 926 O 81.4 79.9 162.8 89.7 80.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 411 OD1 REMARK 620 2 ALA A 461 O 87.3 REMARK 620 3 THR A 464 O 161.8 95.2 REMARK 620 4 HOH A 866 O 95.4 176.2 83.1 REMARK 620 5 HOH A1230 O 96.6 89.8 101.4 87.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HA3 RELATED DB: PDB REMARK 900 6HA3 CONTAINS THE SAME PROTEIN IN COVALENT COMPLEX WITH SUBSTRATE REMARK 900 F6P. DBREF 6HAD A 1 623 UNP P29401 TKT_HUMAN 1 623 SEQADV 6HA3 GLN A 160 UNP P29401 GLU 160 ENGINEERED MUTATION SEQADV 6HA3 LEU A 624 UNP P29401 EXPRESSION TAG SEQADV 6HA3 VAL A 625 UNP P29401 EXPRESSION TAG SEQADV 6HA3 PRO A 626 UNP P29401 EXPRESSION TAG SEQADV 6HA3 ARG A 627 UNP P29401 EXPRESSION TAG SEQADV 6HA3 GLY A 628 UNP P29401 EXPRESSION TAG SEQADV 6HA3 SER A 629 UNP P29401 EXPRESSION TAG SEQADV 6HA3 LEU A 630 UNP P29401 EXPRESSION TAG SEQADV 6HA3 GLU A 631 UNP P29401 EXPRESSION TAG SEQADV 6HA3 HIS A 632 UNP P29401 EXPRESSION TAG SEQADV 6HA3 HIS A 633 UNP P29401 EXPRESSION TAG SEQADV 6HA3 HIS A 634 UNP P29401 EXPRESSION TAG SEQADV 6HA3 HIS A 635 UNP P29401 EXPRESSION TAG SEQADV 6HA3 HIS A 636 UNP P29401 EXPRESSION TAG SEQADV 6HA3 HIS A 637 UNP P29401 EXPRESSION TAG SEQRES 1 A 637 MET GLU SER TYR HIS LYS PRO ASP GLN GLN LYS LEU GLN SEQRES 2 A 637 ALA LEU LYS ASP THR ALA ASN ARG LEU ARG ILE SER SER SEQRES 3 A 637 ILE GLN ALA THR THR ALA ALA GLY SER GLY HIS PRO THR SEQRES 4 A 637 SER CYS CYS SER ALA ALA GLU ILE MET ALA VAL LEU PHE SEQRES 5 A 637 PHE HIS THR MET ARG TYR LYS SER GLN ASP PRO ARG ASN SEQRES 6 A 637 PRO HIS ASN ASP ARG PHE VAL LEU SER LYS GLY HIS ALA SEQRES 7 A 637 ALA PRO ILE LEU TYR ALA VAL TRP ALA GLU ALA GLY PHE SEQRES 8 A 637 LEU ALA GLU ALA GLU LEU LEU ASN LEU ARG LYS ILE SER SEQRES 9 A 637 SER ASP LEU ASP GLY HIS PRO VAL PRO LYS GLN ALA PHE SEQRES 10 A 637 THR ASP VAL ALA THR GLY SER LEU GLY GLN GLY LEU GLY SEQRES 11 A 637 ALA ALA CYS GLY MET ALA TYR THR GLY LYS TYR PHE ASP SEQRES 12 A 637 LYS ALA SER TYR ARG VAL TYR CYS LEU LEU GLY ASP GLY SEQRES 13 A 637 GLU LEU SER GLN GLY SER VAL TRP GLU ALA MET ALA PHE SEQRES 14 A 637 ALA SER ILE TYR LYS LEU ASP ASN LEU VAL ALA ILE LEU SEQRES 15 A 637 ASP ILE ASN ARG LEU GLY GLN SER ASP PRO ALA PRO LEU SEQRES 16 A 637 GLN HIS GLN MET ASP ILE TYR GLN LYS ARG CYS GLU ALA SEQRES 17 A 637 PHE GLY TRP HIS ALA ILE ILE VAL ASP GLY HIS SER VAL SEQRES 18 A 637 GLU GLU LEU CYS LYS ALA PHE GLY GLN ALA LYS HIS GLN SEQRES 19 A 637 PRO THR ALA ILE ILE ALA LYS THR PHE LYS GLY ARG GLY SEQRES 20 A 637 ILE THR GLY VAL GLU ASP LYS GLU SER TRP HIS GLY LYS SEQRES 21 A 637 PRO LEU PRO LYS ASN MET ALA GLU GLN ILE ILE GLN GLU SEQRES 22 A 637 ILE TYR SER GLN ILE GLN SER LYS LYS LYS ILE LEU ALA SEQRES 23 A 637 THR PRO PRO GLN GLU ASP ALA PRO SER VAL ASP ILE ALA SEQRES 24 A 637 ASN ILE ARG MET PRO SER LEU PRO SER TYR LYS VAL GLY SEQRES 25 A 637 ASP LYS ILE ALA THR ARG LYS ALA TYR GLY GLN ALA LEU SEQRES 26 A 637 ALA LYS LEU GLY HIS ALA SER ASP ARG ILE ILE ALA LEU SEQRES 27 A 637 ASP GLY ASP THR LYS ASN SER THR PHE SER GLU ILE PHE SEQRES 28 A 637 LYS LYS GLU HIS PRO ASP ARG PHE ILE GLU CYS TYR ILE SEQRES 29 A 637 ALA GLU GLN ASN MET VAL SER ILE ALA VAL GLY CYS ALA SEQRES 30 A 637 THR ARG ASN ARG THR VAL PRO PHE CYS SER THR PHE ALA SEQRES 31 A 637 ALA PHE PHE THR ARG ALA PHE ASP GLN ILE ARG MET ALA SEQRES 32 A 637 ALA ILE SER GLU SER ASN ILE ASN LEU CYS GLY SER HIS SEQRES 33 A 637 CYS GLY VAL SER ILE GLY GLU ASP GLY PRO SER GLN MET SEQRES 34 A 637 ALA LEU GLU ASP LEU ALA MET PHE ARG SER VAL PRO THR SEQRES 35 A 637 SER THR VAL PHE TYR PRO SER ASP GLY VAL ALA THR GLU SEQRES 36 A 637 LYS ALA VAL GLU LEU ALA ALA ASN THR LYS GLY ILE CYS SEQRES 37 A 637 PHE ILE ARG THR SER ARG PRO GLU ASN ALA ILE ILE TYR SEQRES 38 A 637 ASN ASN ASN GLU ASP PHE GLN VAL GLY GLN ALA LYS VAL SEQRES 39 A 637 VAL LEU LYS SER LYS ASP ASP GLN VAL THR VAL ILE GLY SEQRES 40 A 637 ALA GLY VAL THR LEU HIS GLU ALA LEU ALA ALA ALA GLU SEQRES 41 A 637 LEU LEU LYS LYS GLU LYS ILE ASN ILE ARG VAL LEU ASP SEQRES 42 A 637 PRO PHE THR ILE LYS PRO LEU ASP ARG LYS LEU ILE LEU SEQRES 43 A 637 ASP SER ALA ARG ALA THR LYS GLY ARG ILE LEU THR VAL SEQRES 44 A 637 GLU ASP HIS TYR TYR GLU GLY GLY ILE GLY GLU ALA VAL SEQRES 45 A 637 SER SER ALA VAL VAL GLY GLU PRO GLY ILE THR VAL THR SEQRES 46 A 637 HIS LEU ALA VAL ASN ARG VAL PRO ARG SER GLY LYS PRO SEQRES 47 A 637 ALA GLU LEU LEU LYS MET PHE GLY ILE ASP ARG ASP ALA SEQRES 48 A 637 ILE ALA GLN ALA VAL ARG GLY LEU ILE THR LYS ALA LEU SEQRES 49 A 637 VAL PRO ARG GLY SER LEU GLU HIS HIS HIS HIS HIS HIS HET NA A 701 1 HET CA A 702 1 HET MG A 703 1 HET TPP A 704 42 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 2 NA NA 1+ FORMUL 3 CA CA 2+ FORMUL 4 MG MG 2+ FORMUL 5 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 6 HOH *697(H2 O) HELIX 1 AA1 ASP A 8 GLY A 34 1 27 HELIX 2 AA2 HIS A 37 SER A 43 1 7 HELIX 3 AA3 ALA A 44 HIS A 54 1 11 HELIX 4 AA4 LYS A 75 HIS A 77 5 3 HELIX 5 AA5 ALA A 78 ALA A 89 1 12 HELIX 6 AA6 ALA A 93 LEU A 100 5 8 HELIX 7 AA7 GLN A 127 PHE A 142 1 16 HELIX 8 AA8 GLY A 156 SER A 159 5 4 HELIX 9 AA9 GLN A 160 TYR A 173 1 14 HELIX 10 AB1 GLN A 198 PHE A 209 1 12 HELIX 11 AB2 SER A 220 GLN A 230 1 11 HELIX 12 AB3 PRO A 263 SER A 276 1 14 HELIX 13 AB4 THR A 317 SER A 332 1 16 HELIX 14 AB5 THR A 342 PHE A 347 1 6 HELIX 15 AB6 SER A 348 HIS A 355 1 8 HELIX 16 AB7 ALA A 365 THR A 378 1 14 HELIX 17 AB8 ARG A 379 ARG A 381 5 3 HELIX 18 AB9 ALA A 391 ARG A 395 5 5 HELIX 19 AC1 ALA A 396 SER A 406 1 11 HELIX 20 AC2 GLY A 418 GLY A 422 5 5 HELIX 21 AC3 GLY A 425 MET A 429 5 5 HELIX 22 AC4 GLU A 432 SER A 439 1 8 HELIX 23 AC5 ASP A 450 ASN A 463 1 14 HELIX 24 AC6 GLY A 509 LYS A 524 1 16 HELIX 25 AC7 ASP A 541 THR A 552 1 12 HELIX 26 AC8 GLY A 567 VAL A 577 1 11 HELIX 27 AC9 LYS A 597 PHE A 605 1 9 HELIX 28 AD1 ASP A 608 THR A 621 1 14 SHEET 1 AA1 5 ARG A 70 LEU A 73 0 SHEET 2 AA1 5 VAL A 149 GLY A 154 1 O TYR A 150 N ARG A 70 SHEET 3 AA1 5 LEU A 178 ILE A 184 1 O ILE A 181 N CYS A 151 SHEET 4 AA1 5 THR A 236 LYS A 241 1 O ILE A 238 N LEU A 182 SHEET 5 AA1 5 HIS A 212 ASP A 217 1 N ILE A 214 O ILE A 239 SHEET 1 AA2 2 LYS A 314 ALA A 316 0 SHEET 2 AA2 2 GLU A 476 ALA A 478 -1 O ASN A 477 N ILE A 315 SHEET 1 AA3 7 PHE A 359 GLU A 361 0 SHEET 2 AA3 7 ILE A 335 ASP A 339 1 N ALA A 337 O ILE A 360 SHEET 3 AA3 7 VAL A 383 PHE A 389 1 O PHE A 385 N LEU A 338 SHEET 4 AA3 7 ILE A 410 SER A 415 1 O CYS A 413 N CYS A 386 SHEET 5 AA3 7 ILE A 467 ARG A 471 1 O CYS A 468 N LEU A 412 SHEET 6 AA3 7 SER A 443 PHE A 446 1 N PHE A 446 O PHE A 469 SHEET 7 AA3 7 THR A 536 LYS A 538 -1 O ILE A 537 N VAL A 445 SHEET 1 AA4 5 LYS A 493 LEU A 496 0 SHEET 2 AA4 5 ASN A 528 ASP A 533 -1 O ASP A 533 N LYS A 493 SHEET 3 AA4 5 ASP A 501 ILE A 506 1 N VAL A 505 O ARG A 530 SHEET 4 AA4 5 ARG A 555 TYR A 563 1 O LEU A 557 N ILE A 506 SHEET 5 AA4 5 THR A 583 VAL A 589 1 O LEU A 587 N THR A 558 LINK OD1 ASP A 155 CA A CA A 702 1555 1555 2.16 LINK OD1 ASP A 155 MG B MG A 703 1555 1555 2.10 LINK OD1 ASN A 185 CA A CA A 702 1555 1555 2.20 LINK OD1 ASN A 185 MG B MG A 703 1555 1555 2.29 LINK O LEU A 187 CA A CA A 702 1555 1555 2.21 LINK O LEU A 187 MG B MG A 703 1555 1555 2.19 LINK OD1 ASN A 411 NA NA A 701 1555 1555 2.37 LINK O ALA A 461 NA NA A 701 1555 1555 2.24 LINK O THR A 464 NA NA A 701 1555 1555 2.36 LINK NA NA A 701 O HOH A 866 1555 1555 2.25 LINK NA NA A 701 O HOH A1230 1555 1555 2.41 LINK CA A CA A 702 O2A TPP A 704 1555 1555 2.17 LINK CA A CA A 702 O1B TPP A 704 1555 1555 2.20 LINK CA A CA A 702 O HOH A 926 1555 1555 2.37 LINK MG B MG A 703 O2A TPP A 704 1555 1555 2.10 LINK MG B MG A 703 O1B TPP A 704 1555 1555 2.26 LINK MG B MG A 703 O HOH A 926 1555 1555 2.42 CISPEP 1 LYS A 538 PRO A 539 0 -7.74 SITE 1 AC1 6 ASN A 411 ALA A 461 THR A 464 CYS A 468 SITE 2 AC1 6 HOH A 866 HOH A1230 SITE 1 AC2 5 ASP A 155 ASN A 185 LEU A 187 TPP A 704 SITE 2 AC2 5 HOH A 926 SITE 1 AC3 5 ASP A 155 ASN A 185 LEU A 187 TPP A 704 SITE 2 AC3 5 HOH A 926 SITE 1 AC4 25 SER A 40 LYS A 75 HIS A 77 GLY A 123 SITE 2 AC4 25 SER A 124 LEU A 125 GLY A 154 ASP A 155 SITE 3 AC4 25 GLY A 156 GLU A 157 GLN A 160 ASN A 185 SITE 4 AC4 25 LEU A 187 GLN A 189 LYS A 244 HIS A 258 SITE 5 AC4 25 ASP A 341 ILE A 364 GLU A 366 PHE A 392 SITE 6 AC4 25 ARG A 395 GLN A 428 CA A 702 MG A 703 SITE 7 AC4 25 HOH A 926 CRYST1 115.710 85.490 73.610 90.00 127.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008642 0.000000 0.006717 0.00000 SCALE2 0.000000 0.011697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017206 0.00000