HEADER TRANSFERASE 13-AUG-18 6HBS TITLE STRUCTURE OF PLP INTERNAL ALDIMINE FORM OF SPHINGOPYXIS SP. MTA144 TITLE 2 FUMI PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOPENTOL AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOPYXIS MACROGOLTABIDA; SOURCE 3 ORGANISM_TAXID: 33050; SOURCE 4 GENE: FUMI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMINOTRANSFERASE, PLP, FUMONISIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.CAMPOPIANO,A.SERPICO,J.MARLES-WRIGHT REVDAT 2 17-JAN-24 6HBS 1 LINK REVDAT 1 28-AUG-19 6HBS 0 JRNL AUTH D.J.CAMPOPIANO,A.SERPICO,J.MARLES-WRIGHT JRNL TITL STRUCTURE OF PLP INTERNAL ALDIMINE FORM OF SPHINGOPYXIS SP. JRNL TITL 2 MTA144 FUMI PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 90702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4736 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6663 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 307 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 587 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6606 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5708 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8984 ; 1.391 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13346 ; 0.987 ; 1.635 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 832 ; 6.659 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 370 ;29.863 ;20.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 996 ;13.583 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;16.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 854 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7656 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1312 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3310 ; 1.646 ; 2.347 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3309 ; 1.644 ; 2.346 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4136 ; 2.246 ; 3.509 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4137 ; 2.246 ; 3.511 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3296 ; 2.818 ; 2.700 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3297 ; 2.817 ; 2.700 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4845 ; 4.274 ; 3.923 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7598 ; 5.469 ;28.621 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7484 ; 5.371 ;28.277 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95437 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 46.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67570 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0 0.1 M AMMONIUM REMARK 280 SULFATE 30 % (W/V) POLYACRYLATE, SODIUM SALT, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.20950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 MET A 417 REMARK 465 GLN A 418 REMARK 465 LEU A 419 REMARK 465 ALA A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 ALA A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 VAL A 426 REMARK 465 ASP A 427 REMARK 465 LYS A 428 REMARK 465 LEU A 429 REMARK 465 ALA A 430 REMARK 465 ALA A 431 REMARK 465 ALA A 432 REMARK 465 LEU A 433 REMARK 465 GLU A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 MET B 417 REMARK 465 GLN B 418 REMARK 465 LEU B 419 REMARK 465 ALA B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 ALA B 423 REMARK 465 SER B 424 REMARK 465 SER B 425 REMARK 465 VAL B 426 REMARK 465 ASP B 427 REMARK 465 LYS B 428 REMARK 465 LEU B 429 REMARK 465 ALA B 430 REMARK 465 ALA B 431 REMARK 465 ALA B 432 REMARK 465 LEU B 433 REMARK 465 GLU B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 258 C4A PLP A 501 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 22 170.96 177.01 REMARK 500 ASP A 86 -86.15 -121.71 REMARK 500 ARG A 164 28.27 -140.78 REMARK 500 PHE A 202 18.79 59.03 REMARK 500 LYS A 258 -72.50 60.25 REMARK 500 PRO A 309 43.48 -82.30 REMARK 500 MET B 22 171.90 179.42 REMARK 500 LEU B 84 -68.07 -92.37 REMARK 500 ASP B 86 -87.87 -119.90 REMARK 500 LYS B 116 -63.73 -103.24 REMARK 500 ARG B 164 28.26 -140.02 REMARK 500 LYS B 258 -71.74 60.25 REMARK 500 PRO B 309 41.03 -85.32 REMARK 500 TYR B 375 -11.76 -140.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 40 0.11 SIDE CHAIN REMARK 500 ARG B 233 0.07 SIDE CHAIN REMARK 500 ARG B 398 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLP A 501 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 103 O REMARK 620 2 VAL A 106 O 88.2 REMARK 620 3 ALA A 109 O 105.9 92.0 REMARK 620 4 HOH A 655 O 164.6 105.8 80.5 REMARK 620 5 HOH A 779 O 87.3 84.9 166.4 87.6 REMARK 620 6 HOH A 852 O 94.0 175.9 90.8 71.7 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 103 O REMARK 620 2 VAL B 106 O 87.5 REMARK 620 3 ALA B 109 O 106.3 91.0 REMARK 620 4 HOH B 604 O 164.3 101.5 86.5 REMARK 620 5 HOH B 813 O 90.6 91.3 163.0 76.5 REMARK 620 6 HOH B 846 O 95.2 176.5 90.4 75.4 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 501 and LYS B REMARK 800 258 DBREF 6HBS A 1 422 UNP D2D3B2 FUMI_SPHMC 1 422 DBREF 6HBS B 1 422 UNP D2D3B2 FUMI_SPHMC 1 422 SEQADV 6HBS ALA A 423 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS SER A 424 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS SER A 425 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS VAL A 426 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ASP A 427 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS LYS A 428 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS LEU A 429 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA A 430 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA A 431 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA A 432 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS LEU A 433 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS GLU A 434 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS A 435 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS A 436 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS A 437 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS A 438 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS A 439 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS A 440 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA B 423 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS SER B 424 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS SER B 425 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS VAL B 426 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ASP B 427 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS LYS B 428 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS LEU B 429 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA B 430 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA B 431 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS ALA B 432 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS LEU B 433 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS GLU B 434 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS B 435 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS B 436 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS B 437 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS B 438 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS B 439 UNP D2D3B2 EXPRESSION TAG SEQADV 6HBS HIS B 440 UNP D2D3B2 EXPRESSION TAG SEQRES 1 A 440 MET ALA ASN GLY THR ARG GLN LYS ASP LEU ARG GLU ARG SEQRES 2 A 440 ALA GLU ARG VAL ILE PRO GLY GLY MET TYR GLY HIS GLU SEQRES 3 A 440 SER THR ARG LEU LEU PRO PRO GLU PHE PRO GLN PHE PHE SEQRES 4 A 440 ARG ARG ALA LEU GLY ALA ARG ILE TRP ASP ALA ASP GLU SEQRES 5 A 440 GLN PRO TYR ILE ASP TYR MET CYS ALA TYR GLY PRO ASN SEQRES 6 A 440 LEU LEU GLY TYR ARG GLN SER GLU ILE GLU ALA ALA ALA SEQRES 7 A 440 ASP ALA GLN ARG LEU LEU GLY ASP THR MET THR GLY PRO SEQRES 8 A 440 SER GLU ILE MET VAL ASN LEU ALA GLU ALA PHE VAL GLY SEQRES 9 A 440 MET VAL ARG HIS ALA ASP TRP ALA MET PHE CYS LYS ASN SEQRES 10 A 440 GLY SER ASP ALA THR SER THR ALA MET VAL LEU ALA ARG SEQRES 11 A 440 ALA HIS THR GLY ARG LYS THR ILE LEU CYS ALA LYS GLY SEQRES 12 A 440 ALA TYR HIS GLY ALA SER PRO TRP ASN THR PRO HIS THR SEQRES 13 A 440 ALA GLY ILE LEU ALA SER ASP ARG VAL HIS VAL ALA TYR SEQRES 14 A 440 TYR THR TYR ASN ASP ALA GLN SER LEU SER ASP ALA PHE SEQRES 15 A 440 LYS ALA HIS ASP GLY ASP ILE ALA ALA VAL PHE ALA THR SEQRES 16 A 440 PRO PHE ARG HIS GLU VAL PHE GLU ASP GLN ALA LEU ALA SEQRES 17 A 440 GLN LEU GLU PHE ALA ARG THR ALA ARG LYS CYS CYS ASP SEQRES 18 A 440 GLU THR GLY ALA LEU LEU VAL VAL ASP ASP VAL ARG ALA SEQRES 19 A 440 GLY PHE ARG VAL ALA ARG ASP CYS SER TRP THR HIS LEU SEQRES 20 A 440 GLY ILE GLU PRO ASP LEU SER CYS TRP GLY LYS CYS PHE SEQRES 21 A 440 ALA ASN GLY TYR PRO ILE SER ALA LEU LEU GLY SER ASN SEQRES 22 A 440 LYS ALA ARG ASP ALA ALA ARG ASP ILE PHE VAL THR GLY SEQRES 23 A 440 SER PHE TRP PHE SER ALA VAL PRO MET ALA ALA ALA ILE SEQRES 24 A 440 GLU THR LEU ARG ILE ILE ARG GLU THR PRO TYR LEU GLU SEQRES 25 A 440 THR LEU ILE ALA SER GLY ALA ALA LEU ARG ALA GLY LEU SEQRES 26 A 440 GLU ALA GLN SER GLN ARG HIS GLY LEU GLU LEU LYS GLN SEQRES 27 A 440 THR GLY PRO ALA GLN MET PRO GLN ILE PHE PHE ALA ASP SEQRES 28 A 440 ASP PRO ASP PHE ARG ILE GLY TYR ALA TRP ALA ALA ALA SEQRES 29 A 440 CYS LEU LYS GLY GLY VAL TYR VAL HIS PRO TYR HIS ASN SEQRES 30 A 440 MET PHE LEU SER ALA ALA HIS THR VAL ASP ASP VAL THR SEQRES 31 A 440 GLU THR LEU GLU ALA THR ASP ARG ALA PHE SER ALA VAL SEQRES 32 A 440 LEU ARG ASP PHE ALA SER LEU GLN PRO HIS PRO ILE LEU SEQRES 33 A 440 MET GLN LEU ALA GLY ALA ALA SER SER VAL ASP LYS LEU SEQRES 34 A 440 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 440 MET ALA ASN GLY THR ARG GLN LYS ASP LEU ARG GLU ARG SEQRES 2 B 440 ALA GLU ARG VAL ILE PRO GLY GLY MET TYR GLY HIS GLU SEQRES 3 B 440 SER THR ARG LEU LEU PRO PRO GLU PHE PRO GLN PHE PHE SEQRES 4 B 440 ARG ARG ALA LEU GLY ALA ARG ILE TRP ASP ALA ASP GLU SEQRES 5 B 440 GLN PRO TYR ILE ASP TYR MET CYS ALA TYR GLY PRO ASN SEQRES 6 B 440 LEU LEU GLY TYR ARG GLN SER GLU ILE GLU ALA ALA ALA SEQRES 7 B 440 ASP ALA GLN ARG LEU LEU GLY ASP THR MET THR GLY PRO SEQRES 8 B 440 SER GLU ILE MET VAL ASN LEU ALA GLU ALA PHE VAL GLY SEQRES 9 B 440 MET VAL ARG HIS ALA ASP TRP ALA MET PHE CYS LYS ASN SEQRES 10 B 440 GLY SER ASP ALA THR SER THR ALA MET VAL LEU ALA ARG SEQRES 11 B 440 ALA HIS THR GLY ARG LYS THR ILE LEU CYS ALA LYS GLY SEQRES 12 B 440 ALA TYR HIS GLY ALA SER PRO TRP ASN THR PRO HIS THR SEQRES 13 B 440 ALA GLY ILE LEU ALA SER ASP ARG VAL HIS VAL ALA TYR SEQRES 14 B 440 TYR THR TYR ASN ASP ALA GLN SER LEU SER ASP ALA PHE SEQRES 15 B 440 LYS ALA HIS ASP GLY ASP ILE ALA ALA VAL PHE ALA THR SEQRES 16 B 440 PRO PHE ARG HIS GLU VAL PHE GLU ASP GLN ALA LEU ALA SEQRES 17 B 440 GLN LEU GLU PHE ALA ARG THR ALA ARG LYS CYS CYS ASP SEQRES 18 B 440 GLU THR GLY ALA LEU LEU VAL VAL ASP ASP VAL ARG ALA SEQRES 19 B 440 GLY PHE ARG VAL ALA ARG ASP CYS SER TRP THR HIS LEU SEQRES 20 B 440 GLY ILE GLU PRO ASP LEU SER CYS TRP GLY LYS CYS PHE SEQRES 21 B 440 ALA ASN GLY TYR PRO ILE SER ALA LEU LEU GLY SER ASN SEQRES 22 B 440 LYS ALA ARG ASP ALA ALA ARG ASP ILE PHE VAL THR GLY SEQRES 23 B 440 SER PHE TRP PHE SER ALA VAL PRO MET ALA ALA ALA ILE SEQRES 24 B 440 GLU THR LEU ARG ILE ILE ARG GLU THR PRO TYR LEU GLU SEQRES 25 B 440 THR LEU ILE ALA SER GLY ALA ALA LEU ARG ALA GLY LEU SEQRES 26 B 440 GLU ALA GLN SER GLN ARG HIS GLY LEU GLU LEU LYS GLN SEQRES 27 B 440 THR GLY PRO ALA GLN MET PRO GLN ILE PHE PHE ALA ASP SEQRES 28 B 440 ASP PRO ASP PHE ARG ILE GLY TYR ALA TRP ALA ALA ALA SEQRES 29 B 440 CYS LEU LYS GLY GLY VAL TYR VAL HIS PRO TYR HIS ASN SEQRES 30 B 440 MET PHE LEU SER ALA ALA HIS THR VAL ASP ASP VAL THR SEQRES 31 B 440 GLU THR LEU GLU ALA THR ASP ARG ALA PHE SER ALA VAL SEQRES 32 B 440 LEU ARG ASP PHE ALA SER LEU GLN PRO HIS PRO ILE LEU SEQRES 33 B 440 MET GLN LEU ALA GLY ALA ALA SER SER VAL ASP LYS LEU SEQRES 34 B 440 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET PLP A 501 15 HET MG A 502 1 HET PLP B 501 15 HET MG B 502 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *587(H2 O) HELIX 1 AA1 GLY A 4 ILE A 18 1 15 HELIX 2 AA2 PRO A 19 MET A 22 5 4 HELIX 3 AA3 MET A 59 GLY A 63 5 5 HELIX 4 AA4 GLN A 71 LEU A 83 1 13 HELIX 5 AA5 GLU A 93 VAL A 106 1 14 HELIX 6 AA6 ASN A 117 GLY A 134 1 18 HELIX 7 AA7 LEU A 160 VAL A 165 5 6 HELIX 8 AA8 ASP A 174 HIS A 185 1 12 HELIX 9 AA9 GLN A 209 GLY A 224 1 16 HELIX 10 AB1 TRP A 244 GLY A 248 5 5 HELIX 11 AB2 ALA A 275 ILE A 282 1 8 HELIX 12 AB3 SER A 291 THR A 308 1 18 HELIX 13 AB4 PRO A 309 GLY A 333 1 25 HELIX 14 AB5 PHE A 355 GLY A 368 1 14 HELIX 15 AB6 THR A 385 ASP A 406 1 22 HELIX 16 AB7 PHE A 407 LEU A 410 5 4 HELIX 17 AB8 THR B 5 ILE B 18 1 14 HELIX 18 AB9 PRO B 19 MET B 22 5 4 HELIX 19 AC1 MET B 59 GLY B 63 5 5 HELIX 20 AC2 GLN B 71 LEU B 83 1 13 HELIX 21 AC3 GLU B 93 VAL B 106 1 14 HELIX 22 AC4 ASN B 117 GLY B 134 1 18 HELIX 23 AC5 LEU B 160 ARG B 164 5 5 HELIX 24 AC6 ASP B 174 HIS B 185 1 12 HELIX 25 AC7 GLN B 209 GLY B 224 1 16 HELIX 26 AC8 TRP B 244 GLY B 248 5 5 HELIX 27 AC9 ALA B 275 ILE B 282 1 8 HELIX 28 AD1 SER B 291 THR B 308 1 18 HELIX 29 AD2 PRO B 309 GLY B 333 1 25 HELIX 30 AD3 PHE B 355 GLY B 368 1 14 HELIX 31 AD4 THR B 385 ASP B 406 1 22 HELIX 32 AD5 PHE B 407 LEU B 410 5 4 SHEET 1 AA1 4 PHE A 39 LEU A 43 0 SHEET 2 AA1 4 ARG A 46 ASP A 49 -1 O TRP A 48 N ARG A 40 SHEET 3 AA1 4 PRO A 54 ASP A 57 -1 O TYR A 55 N ILE A 47 SHEET 4 AA1 4 VAL A 370 TYR A 371 1 O TYR A 371 N ILE A 56 SHEET 1 AA2 7 TRP A 111 CYS A 115 0 SHEET 2 AA2 7 SER A 267 GLY A 271 -1 O LEU A 269 N MET A 113 SHEET 3 AA2 7 LEU A 253 TRP A 256 -1 N SER A 254 O LEU A 270 SHEET 4 AA2 7 LEU A 226 ASP A 230 1 N VAL A 229 O LEU A 253 SHEET 5 AA2 7 ILE A 189 ALA A 194 1 N VAL A 192 O VAL A 228 SHEET 6 AA2 7 THR A 137 ALA A 141 1 N LEU A 139 O ALA A 191 SHEET 7 AA2 7 VAL A 167 TYR A 170 1 O ALA A 168 N ILE A 138 SHEET 1 AA3 2 PHE A 197 ARG A 198 0 SHEET 2 AA3 2 ALA A 206 LEU A 207 -1 O ALA A 206 N ARG A 198 SHEET 1 AA4 2 LEU A 336 THR A 339 0 SHEET 2 AA4 2 GLN A 346 PHE A 349 -1 O PHE A 348 N LYS A 337 SHEET 1 AA5 4 PHE B 39 LEU B 43 0 SHEET 2 AA5 4 ARG B 46 ASP B 49 -1 O TRP B 48 N ARG B 40 SHEET 3 AA5 4 PRO B 54 ASP B 57 -1 O TYR B 55 N ILE B 47 SHEET 4 AA5 4 VAL B 370 TYR B 371 1 O TYR B 371 N ILE B 56 SHEET 1 AA6 7 TRP B 111 CYS B 115 0 SHEET 2 AA6 7 SER B 267 GLY B 271 -1 O LEU B 269 N MET B 113 SHEET 3 AA6 7 LEU B 253 TRP B 256 -1 N SER B 254 O LEU B 270 SHEET 4 AA6 7 LEU B 226 ASP B 230 1 N VAL B 229 O LEU B 253 SHEET 5 AA6 7 ILE B 189 ALA B 194 1 N VAL B 192 O VAL B 228 SHEET 6 AA6 7 THR B 137 ALA B 141 1 N LEU B 139 O PHE B 193 SHEET 7 AA6 7 VAL B 167 TYR B 170 1 O ALA B 168 N ILE B 138 SHEET 1 AA7 2 PHE B 197 ARG B 198 0 SHEET 2 AA7 2 ALA B 206 LEU B 207 -1 O ALA B 206 N ARG B 198 SHEET 1 AA8 2 LEU B 336 THR B 339 0 SHEET 2 AA8 2 GLN B 346 PHE B 349 -1 O PHE B 348 N LYS B 337 LINK NZ LYS B 258 C4A PLP B 501 1555 1555 1.59 LINK O VAL A 103 MG MG A 502 1555 1555 2.22 LINK O VAL A 106 MG MG A 502 1555 1555 2.38 LINK O ALA A 109 MG MG A 502 1555 1555 2.37 LINK MG MG A 502 O HOH A 655 1555 1555 2.63 LINK MG MG A 502 O HOH A 779 1555 1555 2.41 LINK MG MG A 502 O HOH A 852 1555 1555 2.44 LINK O VAL B 103 MG MG B 502 1555 1555 2.26 LINK O VAL B 106 MG MG B 502 1555 1555 2.37 LINK O ALA B 109 MG MG B 502 1555 1555 2.42 LINK MG MG B 502 O HOH B 604 1555 1555 2.67 LINK MG MG B 502 O HOH B 813 1555 1555 2.34 LINK MG MG B 502 O HOH B 846 1555 1555 2.48 SITE 1 AC1 16 ASN A 117 GLY A 118 SER A 119 TYR A 145 SITE 2 AC1 16 HIS A 146 HIS A 199 ASP A 230 VAL A 232 SITE 3 AC1 16 ARG A 233 LYS A 258 HOH A 647 HOH A 710 SITE 4 AC1 16 HOH A 733 HOH A 787 GLY B 286 SER B 287 SITE 1 AC2 6 VAL A 103 VAL A 106 ALA A 109 HOH A 655 SITE 2 AC2 6 HOH A 779 HOH A 852 SITE 1 AC3 6 VAL B 103 VAL B 106 ALA B 109 HOH B 604 SITE 2 AC3 6 HOH B 813 HOH B 846 SITE 1 AC4 21 GLY A 286 SER A 287 PHE A 288 TYR B 62 SITE 2 AC4 21 PRO B 64 ASN B 117 GLY B 118 SER B 119 SITE 3 AC4 21 TYR B 145 HIS B 146 HIS B 199 ASP B 230 SITE 4 AC4 21 VAL B 232 ARG B 233 GLY B 257 CYS B 259 SITE 5 AC4 21 HOH B 637 HOH B 672 HOH B 677 HOH B 726 SITE 6 AC4 21 HOH B 757 CRYST1 63.180 104.419 65.250 90.00 109.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015828 0.000000 0.005532 0.00000 SCALE2 0.000000 0.009577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016235 0.00000