HEADER PLANT PROTEIN 17-AUG-18 6HD3 TITLE COMMON MODE OF REMODELING AAA ATPASES P97/CDC48 BY THEIR DISASSEMBLY TITLE 2 COFACTORS ASPL/PUX1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 48 HOMOLOG A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ATCDC48A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CDC48A, CDC48, AT3G09840, F8A24.11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQLINKH KEYWDS ATPASE, ARABIDOPSIS THALIANA, CDC48, HEXAMER, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.HEINEMANN,Y.ROSKE,S.BANCHENKO,A.ARUMUGHAN,S.PETROVIC REVDAT 4 17-JAN-24 6HD3 1 REMARK REVDAT 3 11-DEC-19 6HD3 1 JRNL REVDAT 2 06-NOV-19 6HD3 1 JRNL REVDAT 1 28-AUG-19 6HD3 0 JRNL AUTH S.BANCHENKO,A.ARUMUGHAN,S.PETROVIC,D.SCHWEFEL,E.E.WANKER, JRNL AUTH 2 Y.ROSKE,U.HEINEMANN JRNL TITL COMMON MODE OF REMODELING AAA ATPASES P97/CDC48 BY THEIR JRNL TITL 2 DISASSEMBLING COFACTORS ASPL/PUX1. JRNL REF STRUCTURE V. 27 1830 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31648844 JRNL DOI 10.1016/J.STR.2019.10.001 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1377 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2822 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2869 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2681 REMARK 3 BIN R VALUE (WORKING SET) : 0.2839 REMARK 3 BIN FREE R VALUE : 0.3468 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.52460 REMARK 3 B22 (A**2) : 16.52460 REMARK 3 B33 (A**2) : -33.04930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.490 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.371 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7109 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9606 ; 3.200 ; HARMONIC REMARK 3 TORSION ANGLES : 2600 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1240 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7109 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 936 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8098 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.79 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.3043 -25.8159 63.0104 REMARK 3 T TENSOR REMARK 3 T11: -0.3416 T22: -0.3311 REMARK 3 T33: 0.4874 T12: 0.0093 REMARK 3 T13: -0.0053 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.4379 L22: 2.5353 REMARK 3 L33: 0.7433 L12: 1.3465 REMARK 3 L13: 0.3081 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: 0.1136 S12: 0.0132 S13: -0.1540 REMARK 3 S21: 0.1548 S22: -0.0299 S23: 0.0095 REMARK 3 S31: 0.0560 S32: -0.1462 S33: -0.0837 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -44.4889 -15.1202 26.9928 REMARK 3 T TENSOR REMARK 3 T11: -0.1025 T22: -0.0442 REMARK 3 T33: -0.2195 T12: 0.0316 REMARK 3 T13: -0.0231 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 3.1171 L22: 2.4913 REMARK 3 L33: 0.9999 L12: 0.2995 REMARK 3 L13: -0.4801 L23: -0.2992 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.2428 S13: -0.1767 REMARK 3 S21: -0.3122 S22: 0.0589 S23: 0.3148 REMARK 3 S31: -0.0166 S32: -0.2436 S33: -0.1382 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.84 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S3S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NA/K PHOSPHATE PH 6.9; 50MM KCL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 125690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 438680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -513.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 219.39900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 380.01022 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -219.39900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 380.01022 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 506.68029 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 -219.39900 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 126.67007 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 219.39900 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 126.67007 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.866025 0.000000 -219.39900 REMARK 350 BIOMT2 7 0.866025 0.500000 0.000000 126.67007 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 173.13300 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 506.68029 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 173.13300 REMARK 350 BIOMT1 9 -0.500000 -0.866025 0.000000 219.39900 REMARK 350 BIOMT2 9 -0.866025 0.500000 0.000000 126.67007 REMARK 350 BIOMT3 9 0.000000 0.000000 -1.000000 173.13300 REMARK 350 BIOMT1 10 0.500000 -0.866025 0.000000 219.39900 REMARK 350 BIOMT2 10 -0.866025 -0.500000 0.000000 380.01022 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 173.13300 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 173.13300 REMARK 350 BIOMT1 12 0.500000 0.866025 0.000000 -219.39900 REMARK 350 BIOMT2 12 0.866025 -0.500000 0.000000 380.01022 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 173.13300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 LYS A 14 REMARK 465 LEU A 435 REMARK 465 GLU A 436 REMARK 465 ASP A 437 REMARK 465 ASP A 438 REMARK 465 SER A 465 REMARK 465 ALA A 466 REMARK 465 LEU A 467 REMARK 465 VAL A 472 REMARK 465 GLU A 473 REMARK 465 VAL A 474 REMARK 465 PRO A 475 REMARK 465 ASN A 476 REMARK 465 VAL A 477 REMARK 465 SER A 478 REMARK 465 TRP A 479 REMARK 465 ASN A 480 REMARK 465 ASP A 481 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 PRO C 4 REMARK 465 ALA C 5 REMARK 465 GLU C 6 REMARK 465 SER C 7 REMARK 465 SER C 8 REMARK 465 ASP C 9 REMARK 465 SER C 10 REMARK 465 LYS C 11 REMARK 465 SER C 12 REMARK 465 LYS C 13 REMARK 465 LYS C 14 REMARK 465 ASP C 15 REMARK 465 PHE C 16 REMARK 465 SER C 17 REMARK 465 THR C 18 REMARK 465 ALA C 19 REMARK 465 ILE C 20 REMARK 465 LEU C 21 REMARK 465 GLU C 22 REMARK 465 ARG C 23 REMARK 465 LYS C 24 REMARK 465 ILE C 433 REMARK 465 ASP C 434 REMARK 465 LEU C 435 REMARK 465 GLU C 436 REMARK 465 PRO C 464 REMARK 465 SER C 465 REMARK 465 ALA C 466 REMARK 465 LEU C 467 REMARK 465 ARG C 468 REMARK 465 GLU C 469 REMARK 465 THR C 470 REMARK 465 VAL C 471 REMARK 465 VAL C 472 REMARK 465 GLU C 473 REMARK 465 VAL C 474 REMARK 465 PRO C 475 REMARK 465 ASN C 476 REMARK 465 VAL C 477 REMARK 465 SER C 478 REMARK 465 TRP C 479 REMARK 465 ASN C 480 REMARK 465 ASP C 481 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 24.95 -76.44 REMARK 500 PRO A 27 0.31 -63.82 REMARK 500 ASP A 111 46.40 -99.54 REMARK 500 GLU A 176 -56.86 68.21 REMARK 500 CYS A 188 52.13 -140.47 REMARK 500 ALA A 313 49.67 38.68 REMARK 500 ARG A 365 -107.61 -109.18 REMARK 500 THR A 406 45.77 -74.82 REMARK 500 ASP A 431 -91.16 -90.21 REMARK 500 VAL C 112 99.00 -63.33 REMARK 500 GLU C 145 24.08 45.79 REMARK 500 GLU C 176 -57.83 69.97 REMARK 500 ASP C 197 8.10 51.72 REMARK 500 ALA C 313 50.76 37.98 REMARK 500 ARG C 365 -108.58 -108.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP C 801 DBREF 6HD3 A 1 481 UNP P54609 CD48A_ARATH 1 481 DBREF 6HD3 C 1 481 UNP P54609 CD48A_ARATH 1 481 SEQRES 1 A 481 MET SER THR PRO ALA GLU SER SER ASP SER LYS SER LYS SEQRES 2 A 481 LYS ASP PHE SER THR ALA ILE LEU GLU ARG LYS LYS SER SEQRES 3 A 481 PRO ASN ARG LEU VAL VAL ASP GLU ALA ILE ASN ASP ASP SEQRES 4 A 481 ASN SER VAL VAL SER LEU HIS PRO ALA THR MET GLU LYS SEQRES 5 A 481 LEU GLN LEU PHE ARG GLY ASP THR ILE LEU ILE LYS GLY SEQRES 6 A 481 LYS LYS ARG LYS ASP THR VAL CYS ILE ALA LEU ALA ASP SEQRES 7 A 481 GLU THR CYS GLU GLU PRO LYS ILE ARG MET ASN LYS VAL SEQRES 8 A 481 VAL ARG SER ASN LEU ARG VAL ARG LEU GLY ASP VAL ILE SEQRES 9 A 481 SER VAL HIS GLN CYS PRO ASP VAL LYS TYR GLY LYS ARG SEQRES 10 A 481 VAL HIS ILE LEU PRO VAL ASP ASP THR VAL GLU GLY VAL SEQRES 11 A 481 THR GLY ASN LEU PHE ASP ALA TYR LEU LYS PRO TYR PHE SEQRES 12 A 481 LEU GLU ALA TYR ARG PRO VAL ARG LYS GLY ASP LEU PHE SEQRES 13 A 481 LEU VAL ARG GLY GLY MET ARG SER VAL GLU PHE LYS VAL SEQRES 14 A 481 ILE GLU THR ASP PRO ALA GLU TYR CYS VAL VAL ALA PRO SEQRES 15 A 481 ASP THR GLU ILE PHE CYS GLU GLY GLU PRO VAL LYS ARG SEQRES 16 A 481 GLU ASP GLU GLU ARG LEU ASP ASP VAL GLY TYR ASP ASP SEQRES 17 A 481 VAL GLY GLY VAL ARG LYS GLN MET ALA GLN ILE ARG GLU SEQRES 18 A 481 LEU VAL GLU LEU PRO LEU ARG HIS PRO GLN LEU PHE LYS SEQRES 19 A 481 SER ILE GLY VAL LYS PRO PRO LYS GLY ILE LEU LEU TYR SEQRES 20 A 481 GLY PRO PRO GLY SER GLY LYS THR LEU ILE ALA ARG ALA SEQRES 21 A 481 VAL ALA ASN GLU THR GLY ALA PHE PHE PHE CYS ILE ASN SEQRES 22 A 481 GLY PRO GLU ILE MET SER LYS LEU ALA GLY GLU SER GLU SEQRES 23 A 481 SER ASN LEU ARG LYS ALA PHE GLU GLU ALA GLU LYS ASN SEQRES 24 A 481 ALA PRO SER ILE ILE PHE ILE ASP GLU ILE ASP SER ILE SEQRES 25 A 481 ALA PRO LYS ARG GLU LYS THR ASN GLY GLU VAL GLU ARG SEQRES 26 A 481 ARG ILE VAL SER GLN LEU LEU THR LEU MET ASP GLY LEU SEQRES 27 A 481 LYS SER ARG ALA HIS VAL ILE VAL MET GLY ALA THR ASN SEQRES 28 A 481 ARG PRO ASN SER ILE ASP PRO ALA LEU ARG ARG PHE GLY SEQRES 29 A 481 ARG PHE ASP ARG GLU ILE ASP ILE GLY VAL PRO ASP GLU SEQRES 30 A 481 ILE GLY ARG LEU GLU VAL LEU ARG ILE HIS THR LYS ASN SEQRES 31 A 481 MET LYS LEU ALA GLU ASP VAL ASP LEU GLU ARG ILE SER SEQRES 32 A 481 LYS ASP THR HIS GLY TYR VAL GLY ALA ASP LEU ALA ALA SEQRES 33 A 481 LEU CYS THR GLU ALA ALA LEU GLN CYS ILE ARG GLU LYS SEQRES 34 A 481 MET ASP VAL ILE ASP LEU GLU ASP ASP SER ILE ASP ALA SEQRES 35 A 481 GLU ILE LEU ASN SER MET ALA VAL THR ASN GLU HIS PHE SEQRES 36 A 481 HIS THR ALA LEU GLY ASN SER ASN PRO SER ALA LEU ARG SEQRES 37 A 481 GLU THR VAL VAL GLU VAL PRO ASN VAL SER TRP ASN ASP SEQRES 1 C 481 MET SER THR PRO ALA GLU SER SER ASP SER LYS SER LYS SEQRES 2 C 481 LYS ASP PHE SER THR ALA ILE LEU GLU ARG LYS LYS SER SEQRES 3 C 481 PRO ASN ARG LEU VAL VAL ASP GLU ALA ILE ASN ASP ASP SEQRES 4 C 481 ASN SER VAL VAL SER LEU HIS PRO ALA THR MET GLU LYS SEQRES 5 C 481 LEU GLN LEU PHE ARG GLY ASP THR ILE LEU ILE LYS GLY SEQRES 6 C 481 LYS LYS ARG LYS ASP THR VAL CYS ILE ALA LEU ALA ASP SEQRES 7 C 481 GLU THR CYS GLU GLU PRO LYS ILE ARG MET ASN LYS VAL SEQRES 8 C 481 VAL ARG SER ASN LEU ARG VAL ARG LEU GLY ASP VAL ILE SEQRES 9 C 481 SER VAL HIS GLN CYS PRO ASP VAL LYS TYR GLY LYS ARG SEQRES 10 C 481 VAL HIS ILE LEU PRO VAL ASP ASP THR VAL GLU GLY VAL SEQRES 11 C 481 THR GLY ASN LEU PHE ASP ALA TYR LEU LYS PRO TYR PHE SEQRES 12 C 481 LEU GLU ALA TYR ARG PRO VAL ARG LYS GLY ASP LEU PHE SEQRES 13 C 481 LEU VAL ARG GLY GLY MET ARG SER VAL GLU PHE LYS VAL SEQRES 14 C 481 ILE GLU THR ASP PRO ALA GLU TYR CYS VAL VAL ALA PRO SEQRES 15 C 481 ASP THR GLU ILE PHE CYS GLU GLY GLU PRO VAL LYS ARG SEQRES 16 C 481 GLU ASP GLU GLU ARG LEU ASP ASP VAL GLY TYR ASP ASP SEQRES 17 C 481 VAL GLY GLY VAL ARG LYS GLN MET ALA GLN ILE ARG GLU SEQRES 18 C 481 LEU VAL GLU LEU PRO LEU ARG HIS PRO GLN LEU PHE LYS SEQRES 19 C 481 SER ILE GLY VAL LYS PRO PRO LYS GLY ILE LEU LEU TYR SEQRES 20 C 481 GLY PRO PRO GLY SER GLY LYS THR LEU ILE ALA ARG ALA SEQRES 21 C 481 VAL ALA ASN GLU THR GLY ALA PHE PHE PHE CYS ILE ASN SEQRES 22 C 481 GLY PRO GLU ILE MET SER LYS LEU ALA GLY GLU SER GLU SEQRES 23 C 481 SER ASN LEU ARG LYS ALA PHE GLU GLU ALA GLU LYS ASN SEQRES 24 C 481 ALA PRO SER ILE ILE PHE ILE ASP GLU ILE ASP SER ILE SEQRES 25 C 481 ALA PRO LYS ARG GLU LYS THR ASN GLY GLU VAL GLU ARG SEQRES 26 C 481 ARG ILE VAL SER GLN LEU LEU THR LEU MET ASP GLY LEU SEQRES 27 C 481 LYS SER ARG ALA HIS VAL ILE VAL MET GLY ALA THR ASN SEQRES 28 C 481 ARG PRO ASN SER ILE ASP PRO ALA LEU ARG ARG PHE GLY SEQRES 29 C 481 ARG PHE ASP ARG GLU ILE ASP ILE GLY VAL PRO ASP GLU SEQRES 30 C 481 ILE GLY ARG LEU GLU VAL LEU ARG ILE HIS THR LYS ASN SEQRES 31 C 481 MET LYS LEU ALA GLU ASP VAL ASP LEU GLU ARG ILE SER SEQRES 32 C 481 LYS ASP THR HIS GLY TYR VAL GLY ALA ASP LEU ALA ALA SEQRES 33 C 481 LEU CYS THR GLU ALA ALA LEU GLN CYS ILE ARG GLU LYS SEQRES 34 C 481 MET ASP VAL ILE ASP LEU GLU ASP ASP SER ILE ASP ALA SEQRES 35 C 481 GLU ILE LEU ASN SER MET ALA VAL THR ASN GLU HIS PHE SEQRES 36 C 481 HIS THR ALA LEU GLY ASN SER ASN PRO SER ALA LEU ARG SEQRES 37 C 481 GLU THR VAL VAL GLU VAL PRO ASN VAL SER TRP ASN ASP HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 A 503 5 HET ADP A 504 27 HET ADP C 801 27 HETNAM PO4 PHOSPHATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 HOH *96(H2 O) HELIX 1 AA1 ASP A 15 ARG A 23 1 9 HELIX 2 AA2 HIS A 46 LEU A 53 1 8 HELIX 3 AA3 ASN A 89 ASN A 95 1 7 HELIX 4 AA4 ASP A 124 VAL A 127 5 4 HELIX 5 AA5 ASN A 133 TYR A 138 1 6 HELIX 6 AA6 TYR A 138 LEU A 144 1 7 HELIX 7 AA7 GLY A 205 VAL A 209 5 5 HELIX 8 AA8 VAL A 212 HIS A 229 1 18 HELIX 9 AA9 GLN A 231 ILE A 236 1 6 HELIX 10 AB1 GLY A 253 GLY A 266 1 14 HELIX 11 AB2 GLY A 274 SER A 279 1 6 HELIX 12 AB3 GLY A 283 ASN A 299 1 17 HELIX 13 AB4 GLY A 321 LEU A 338 1 18 HELIX 14 AB5 LYS A 339 ALA A 342 5 4 HELIX 15 AB6 ASP A 357 ARG A 362 5 6 HELIX 16 AB7 ASP A 376 HIS A 387 1 12 HELIX 17 AB8 ASP A 398 THR A 406 1 9 HELIX 18 AB9 VAL A 410 MET A 430 1 21 HELIX 19 AC1 ASP A 441 ASN A 446 1 6 HELIX 20 AC2 THR A 451 ASN A 461 1 11 HELIX 21 AC3 HIS C 46 LEU C 53 1 8 HELIX 22 AC4 ASN C 89 ASN C 95 1 7 HELIX 23 AC5 ASP C 124 VAL C 127 5 4 HELIX 24 AC6 ASN C 133 TYR C 138 1 6 HELIX 25 AC7 TYR C 138 LEU C 144 1 7 HELIX 26 AC8 GLY C 205 VAL C 209 5 5 HELIX 27 AC9 VAL C 212 HIS C 229 1 18 HELIX 28 AD1 GLN C 231 ILE C 236 1 6 HELIX 29 AD2 GLY C 253 GLY C 266 1 14 HELIX 30 AD3 GLY C 274 SER C 279 1 6 HELIX 31 AD4 GLY C 283 ASN C 299 1 17 HELIX 32 AD5 GLY C 321 LEU C 338 1 18 HELIX 33 AD6 LYS C 339 ALA C 342 5 4 HELIX 34 AD7 ASP C 357 ARG C 362 5 6 HELIX 35 AD8 ASP C 376 HIS C 387 1 12 HELIX 36 AD9 ASP C 398 THR C 406 1 9 HELIX 37 AE1 VAL C 410 MET C 430 1 21 HELIX 38 AE2 ASP C 441 MET C 448 1 8 HELIX 39 AE3 THR C 451 ASN C 461 1 11 SHEET 1 AA1 7 ARG A 29 ASP A 33 0 SHEET 2 AA1 7 LYS A 85 ARG A 87 1 O ILE A 86 N ASP A 33 SHEET 3 AA1 7 VAL A 42 LEU A 45 -1 N SER A 44 O ARG A 87 SHEET 4 AA1 7 ASP A 70 ALA A 77 1 O LEU A 76 N LEU A 45 SHEET 5 AA1 7 THR A 60 LYS A 64 -1 N ILE A 61 O CYS A 73 SHEET 6 AA1 7 VAL A 103 GLN A 108 -1 O HIS A 107 N LEU A 62 SHEET 7 AA1 7 ARG A 29 ASP A 33 -1 N LEU A 30 O ILE A 104 SHEET 1 AA2 4 LEU A 155 GLY A 160 0 SHEET 2 AA2 4 ARG A 163 ASP A 173 -1 O PHE A 167 N PHE A 156 SHEET 3 AA2 4 ARG A 117 PRO A 122 -1 N LEU A 121 O LYS A 168 SHEET 4 AA2 4 GLU A 185 PHE A 187 1 O PHE A 187 N VAL A 118 SHEET 1 AA3 2 ARG A 148 ARG A 151 0 SHEET 2 AA3 2 TYR A 177 VAL A 180 -1 O VAL A 180 N ARG A 148 SHEET 1 AA4 5 PHE A 268 ASN A 273 0 SHEET 2 AA4 5 SER A 302 ASP A 307 1 O ASP A 307 N ILE A 272 SHEET 3 AA4 5 VAL A 344 THR A 350 1 O MET A 347 N ILE A 304 SHEET 4 AA4 5 GLY A 243 TYR A 247 1 N LEU A 246 O GLY A 348 SHEET 5 AA4 5 ARG A 368 ASP A 371 1 O ILE A 370 N LEU A 245 SHEET 1 AA5 7 ARG C 29 ASP C 33 0 SHEET 2 AA5 7 LYS C 85 ARG C 87 1 O ILE C 86 N ASP C 33 SHEET 3 AA5 7 VAL C 42 LEU C 45 -1 N SER C 44 O ARG C 87 SHEET 4 AA5 7 ASP C 70 ALA C 77 1 O LEU C 76 N LEU C 45 SHEET 5 AA5 7 THR C 60 LYS C 64 -1 N ILE C 61 O CYS C 73 SHEET 6 AA5 7 VAL C 103 GLN C 108 -1 O HIS C 107 N LEU C 62 SHEET 7 AA5 7 ARG C 29 ASP C 33 -1 N LEU C 30 O ILE C 104 SHEET 1 AA6 4 LEU C 155 GLY C 160 0 SHEET 2 AA6 4 ARG C 163 ASP C 173 -1 O PHE C 167 N PHE C 156 SHEET 3 AA6 4 ARG C 117 PRO C 122 -1 N LEU C 121 O LYS C 168 SHEET 4 AA6 4 GLU C 185 PHE C 187 1 O GLU C 185 N VAL C 118 SHEET 1 AA7 2 ARG C 148 ARG C 151 0 SHEET 2 AA7 2 TYR C 177 VAL C 180 -1 O VAL C 180 N ARG C 148 SHEET 1 AA8 5 PHE C 268 ASN C 273 0 SHEET 2 AA8 5 SER C 302 ASP C 307 1 O PHE C 305 N PHE C 270 SHEET 3 AA8 5 VAL C 344 THR C 350 1 O MET C 347 N ILE C 304 SHEET 4 AA8 5 GLY C 243 TYR C 247 1 N LEU C 246 O GLY C 348 SHEET 5 AA8 5 ARG C 368 ASP C 371 1 O ILE C 370 N LEU C 245 CISPEP 1 ASP A 173 PRO A 174 0 4.31 CISPEP 2 ALA A 300 PRO A 301 0 1.60 CISPEP 3 SER C 26 PRO C 27 0 4.66 CISPEP 4 ASP C 173 PRO C 174 0 3.82 CISPEP 5 ALA C 300 PRO C 301 0 1.86 SITE 1 AC1 4 ASP A 376 GLU A 377 ARG A 380 HIS A 407 SITE 1 AC2 5 LYS A 67 ARG A 97 ASP A 197 LYS C 67 SITE 2 AC2 5 ARG C 68 SITE 1 AC3 5 LYS A 239 LEU A 338 LYS A 339 SER A 340 SITE 2 AC3 5 HOH A 609 SITE 1 AC4 15 ASP A 208 GLY A 210 PRO A 250 GLY A 251 SITE 2 AC4 15 SER A 252 GLY A 253 LYS A 254 THR A 255 SITE 3 AC4 15 LEU A 256 ARG A 362 VAL A 383 HIS A 387 SITE 4 AC4 15 GLY A 411 ALA A 412 HOH A 618 SITE 1 AC5 12 ASP C 208 GLY C 210 GLY C 251 SER C 252 SITE 2 AC5 12 GLY C 253 LYS C 254 THR C 255 LEU C 256 SITE 3 AC5 12 ARG C 362 HIS C 387 GLY C 411 ALA C 412 CRYST1 146.266 146.266 173.133 90.00 90.00 120.00 P 6 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006837 0.003947 0.000000 0.00000 SCALE2 0.000000 0.007895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005776 0.00000