HEADER HYDROLASE 20-AUG-18 6HEG TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI DEAH/RHA HELICASE HRPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE HRPB; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: HRPB, YADO, B0148, JW0144; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS DEAH/RHA HELICASE RNA HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.G.XIN,W.F.CHEN,S.RETY,Y.X.DAI,X.G.XI REVDAT 3 17-JAN-24 6HEG 1 REMARK REVDAT 2 19-SEP-18 6HEG 1 JRNL REVDAT 1 12-SEP-18 6HEG 0 JRNL AUTH B.G.XIN,W.F.CHEN,S.RETY,Y.X.DAI,X.G.XI JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI DEAH/RHA HELICASE JRNL TITL 2 HRPB. JRNL REF BIOCHEM. BIOPHYS. RES. V. 504 334 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 30190128 JRNL DOI 10.1016/J.BBRC.2018.08.191 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC1_3177: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.1942 - 5.7736 1.00 2731 161 0.1960 0.2212 REMARK 3 2 5.7736 - 4.5835 1.00 2624 132 0.1874 0.2100 REMARK 3 3 4.5835 - 4.0043 1.00 2569 137 0.1789 0.2493 REMARK 3 4 4.0043 - 3.6383 1.00 2587 115 0.2066 0.3071 REMARK 3 5 3.6383 - 3.3776 1.00 2575 118 0.2494 0.3405 REMARK 3 6 3.3776 - 3.1785 1.00 2507 151 0.2498 0.3279 REMARK 3 7 3.1785 - 3.0193 1.00 2529 132 0.2776 0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6219 REMARK 3 ANGLE : 1.031 8446 REMARK 3 CHIRALITY : 0.048 968 REMARK 3 PLANARITY : 0.006 1100 REMARK 3 DIHEDRAL : 14.516 3829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0778 57.4282 103.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2155 REMARK 3 T33: 0.1842 T12: -0.0028 REMARK 3 T13: -0.0124 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0240 L22: 1.5142 REMARK 3 L33: 1.8695 L12: -0.3626 REMARK 3 L13: -0.3867 L23: 0.0895 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: -0.0172 S13: 0.0166 REMARK 3 S21: -0.0986 S22: -0.1384 S23: -0.0176 REMARK 3 S31: -0.3760 S32: -0.0051 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5390 39.9835 95.7067 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2458 REMARK 3 T33: 0.2237 T12: -0.0215 REMARK 3 T13: 0.0004 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.4510 L22: 0.6123 REMARK 3 L33: 1.5684 L12: -0.0409 REMARK 3 L13: -0.5243 L23: -0.1892 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: 0.0115 S13: 0.0290 REMARK 3 S21: -0.0640 S22: -0.0406 S23: -0.0933 REMARK 3 S31: 0.0480 S32: -0.0354 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 415 THROUGH 558 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.0602 36.2899 118.4809 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.3031 REMARK 3 T33: 0.3872 T12: -0.0415 REMARK 3 T13: -0.0244 T23: 0.1404 REMARK 3 L TENSOR REMARK 3 L11: 0.7070 L22: 0.9060 REMARK 3 L33: 1.3160 L12: 0.0331 REMARK 3 L13: 0.6476 L23: 0.6065 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.3130 S13: -0.0338 REMARK 3 S21: -0.1129 S22: -0.1910 S23: -0.3219 REMARK 3 S31: -0.1473 S32: -0.1079 S33: -0.1386 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 559 THROUGH 792 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9493 -2.4626 121.9738 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.3360 REMARK 3 T33: 0.4307 T12: -0.0471 REMARK 3 T13: 0.0311 T23: 0.1048 REMARK 3 L TENSOR REMARK 3 L11: 1.0185 L22: 0.6750 REMARK 3 L33: 0.0735 L12: 0.6407 REMARK 3 L13: 0.0901 L23: 0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.3176 S12: 0.0552 S13: -0.1620 REMARK 3 S21: -0.0688 S22: 0.0870 S23: 0.1767 REMARK 3 S31: 0.0378 S32: 0.1376 S33: -0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT 20180409 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19075 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.019 REMARK 200 RESOLUTION RANGE LOW (A) : 53.194 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.18440 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.78870 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 2XAU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE 0.12M PEG 2000 MME 20% REMARK 280 (W/V), PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.27500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.00250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.18600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.00250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.27500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.18600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 PRO A 544 REMARK 465 ASP A 545 REMARK 465 ALA A 546 REMARK 465 PRO A 757 REMARK 465 ALA A 758 REMARK 465 PRO A 793 REMARK 465 ASP A 794 REMARK 465 ASP A 795 REMARK 465 PRO A 796 REMARK 465 ALA A 797 REMARK 465 ASN A 798 REMARK 465 THR A 799 REMARK 465 ALA A 800 REMARK 465 PRO A 801 REMARK 465 THR A 802 REMARK 465 ARG A 803 REMARK 465 ARG A 804 REMARK 465 THR A 805 REMARK 465 LYS A 806 REMARK 465 LYS A 807 REMARK 465 TYR A 808 REMARK 465 SER A 809 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 787 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLY A 32 O1A ADP A 901 1.77 REMARK 500 OG SER A 34 F4 ALF A 902 1.80 REMARK 500 NH2 ARG A 617 OE2 GLU A 662 2.07 REMARK 500 O PHE A 771 N ALA A 775 2.07 REMARK 500 OD1 ASP A 653 OG SER A 656 2.08 REMARK 500 NH2 ARG A 587 O3 PO4 A 907 2.11 REMARK 500 OE2 GLU A 124 F3 ALF A 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P PO4 A 905 O3 PO4 A 906 4556 0.58 REMARK 500 O1 PO4 A 905 O3 PO4 A 906 4556 1.04 REMARK 500 O4 PO4 A 905 O2 PO4 A 906 4556 1.11 REMARK 500 O4 PO4 A 905 P PO4 A 906 4556 1.24 REMARK 500 O2 PO4 A 905 P PO4 A 906 4556 1.28 REMARK 500 P PO4 A 905 P PO4 A 906 4556 1.38 REMARK 500 O2 PO4 A 905 O1 PO4 A 906 4556 1.48 REMARK 500 O2 PO4 A 905 O3 PO4 A 906 4556 1.51 REMARK 500 O4 PO4 A 905 O3 PO4 A 906 4556 1.68 REMARK 500 O2 PO4 A 905 O4 PO4 A 906 4556 1.88 REMARK 500 O3 PO4 A 905 O3 PO4 A 906 4556 1.94 REMARK 500 P PO4 A 905 O4 PO4 A 906 4556 2.00 REMARK 500 O4 PO4 A 905 O4 PO4 A 906 4556 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 740 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 LEU A 755 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 -5.06 76.34 REMARK 500 LYS A 75 71.62 52.41 REMARK 500 LEU A 251 -5.18 71.87 REMARK 500 ASN A 273 2.05 -67.57 REMARK 500 ARG A 448 58.73 -93.70 REMARK 500 ARG A 562 -3.06 74.92 REMARK 500 PRO A 564 -175.75 -69.02 REMARK 500 GLN A 592 -2.96 75.85 REMARK 500 LEU A 608 -7.87 74.07 REMARK 500 LEU A 644 63.13 -116.89 REMARK 500 HIS A 673 -5.68 73.74 REMARK 500 PRO A 710 47.62 -80.93 REMARK 500 MET A 731 -5.09 74.28 REMARK 500 ASN A 740 138.92 -171.47 REMARK 500 SER A 769 16.95 56.95 REMARK 500 TYR A 776 -4.56 73.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 249 SER A 250 143.40 REMARK 500 ASP A 507 GLY A 508 -129.74 REMARK 500 LEU A 549 LEU A 550 61.95 REMARK 500 PRO A 564 GLN A 565 -147.34 REMARK 500 LEU A 608 HIS A 609 147.71 REMARK 500 ALA A 738 THR A 739 133.73 REMARK 500 TRP A 772 LYS A 773 -137.58 REMARK 500 LYS A 773 GLY A 774 143.45 REMARK 500 ALA A 775 TYR A 776 139.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 608 -10.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALF A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 908 DBREF 6HEG A 1 809 UNP P37024 HRPB_ECOLI 1 809 SEQRES 1 A 809 MET SER SER LEU PRO VAL ALA ALA VAL LEU PRO GLU LEU SEQRES 2 A 809 LEU THR ALA LEU ASP CYS ALA PRO GLN VAL LEU LEU SER SEQRES 3 A 809 ALA PRO THR GLY ALA GLY LYS SER THR TRP LEU PRO LEU SEQRES 4 A 809 GLN LEU LEU ALA HIS PRO GLY ILE ASN GLY LYS ILE ILE SEQRES 5 A 809 LEU LEU GLU PRO ARG ARG LEU ALA ALA ARG ASN VAL ALA SEQRES 6 A 809 GLN ARG LEU ALA GLU LEU LEU ASN GLU LYS PRO GLY ASP SEQRES 7 A 809 THR VAL GLY TYR ARG MET ARG ALA GLN ASN CYS VAL GLY SEQRES 8 A 809 PRO ASN THR ARG LEU GLU VAL VAL THR GLU GLY VAL LEU SEQRES 9 A 809 THR ARG MET ILE GLN ARG ASP PRO GLU LEU SER GLY VAL SEQRES 10 A 809 GLY LEU VAL ILE LEU ASP GLU PHE HIS GLU ARG SER LEU SEQRES 11 A 809 GLN ALA ASP LEU ALA LEU ALA LEU LEU LEU ASP VAL GLN SEQRES 12 A 809 GLN GLY LEU ARG ASP ASP LEU LYS LEU LEU ILE MET SER SEQRES 13 A 809 ALA THR LEU ASP ASN ASP ARG LEU GLN GLN MET LEU PRO SEQRES 14 A 809 GLU ALA PRO VAL VAL ILE SER GLU GLY ARG SER PHE PRO SEQRES 15 A 809 VAL GLU ARG ARG TYR LEU PRO LEU PRO ALA HIS GLN ARG SEQRES 16 A 809 PHE ASP ASP ALA VAL ALA VAL ALA THR ALA GLU MET LEU SEQRES 17 A 809 ARG GLN GLU SER GLY SER LEU LEU LEU PHE LEU PRO GLY SEQRES 18 A 809 VAL GLY GLU ILE GLN ARG VAL GLN GLU GLN LEU ALA SER SEQRES 19 A 809 ARG ILE GLY SER ASP VAL LEU LEU CYS PRO LEU TYR GLY SEQRES 20 A 809 ALA LEU SER LEU ASN ASP GLN ARG LYS ALA ILE LEU PRO SEQRES 21 A 809 ALA PRO GLN GLY MET ARG LYS VAL VAL LEU ALA THR ASN SEQRES 22 A 809 ILE ALA GLU THR SER LEU THR ILE GLU GLY ILE ARG LEU SEQRES 23 A 809 VAL VAL ASP CYS ALA GLN GLU ARG VAL ALA ARG PHE ASP SEQRES 24 A 809 PRO ARG THR GLY LEU THR ARG LEU ILE THR GLN ARG VAL SEQRES 25 A 809 SER GLN ALA SER MET THR GLN ARG ALA GLY ARG ALA GLY SEQRES 26 A 809 ARG LEU GLU PRO GLY ILE SER LEU HIS LEU ILE ALA LYS SEQRES 27 A 809 GLU GLN ALA GLU ARG ALA ALA ALA GLN SER GLU PRO GLU SEQRES 28 A 809 ILE LEU GLN SER ASP LEU SER GLY LEU LEU MET GLU LEU SEQRES 29 A 809 LEU GLN TRP GLY CYS SER ASP PRO ALA GLN MET SER TRP SEQRES 30 A 809 LEU ASP GLN PRO PRO VAL VAL ASN LEU LEU ALA ALA LYS SEQRES 31 A 809 ARG LEU LEU GLN MET LEU GLY ALA LEU GLU GLY GLU ARG SEQRES 32 A 809 LEU SER ALA GLN GLY GLN LYS MET ALA ALA LEU GLY ASN SEQRES 33 A 809 ASP PRO ARG LEU ALA ALA MET LEU VAL SER ALA LYS ASN SEQRES 34 A 809 ASP ASP GLU ALA ALA THR ALA ALA LYS ILE ALA ALA ILE SEQRES 35 A 809 LEU GLU GLU PRO PRO ARG MET GLY ASN SER ASP LEU GLY SEQRES 36 A 809 VAL ALA PHE SER ARG ASN GLN PRO ALA TRP GLN GLN ARG SEQRES 37 A 809 SER GLN GLN LEU LEU LYS ARG LEU ASN VAL ARG GLY GLY SEQRES 38 A 809 GLU ALA ASP SER SER LEU ILE ALA PRO LEU LEU ALA GLY SEQRES 39 A 809 ALA PHE ALA ASP ARG ILE ALA ARG ARG ARG GLY GLN ASP SEQRES 40 A 809 GLY ARG TYR GLN LEU ALA ASN GLY MET GLY ALA MET LEU SEQRES 41 A 809 ASP ALA ASN ASP ALA LEU SER ARG HIS GLU TRP LEU ILE SEQRES 42 A 809 ALA PRO LEU LEU LEU GLN GLY SER ALA SER PRO ASP ALA SEQRES 43 A 809 ARG ILE LEU LEU ALA LEU LEU VAL ASP ILE ASP GLU LEU SEQRES 44 A 809 VAL GLN ARG CYS PRO GLN LEU VAL GLN GLN SER ASP THR SEQRES 45 A 809 VAL GLU TRP ASP ASP ALA GLN GLY THR LEU LYS ALA TRP SEQRES 46 A 809 ARG ARG LEU GLN ILE GLY GLN LEU THR VAL LYS VAL GLN SEQRES 47 A 809 PRO LEU ALA LYS PRO SER GLU ASP GLU LEU HIS GLN ALA SEQRES 48 A 809 MET LEU ASN GLY ILE ARG ASP LYS GLY LEU SER VAL LEU SEQRES 49 A 809 ASN TRP THR ALA GLU ALA GLU GLN LEU ARG LEU ARG LEU SEQRES 50 A 809 LEU CYS ALA ALA LYS TRP LEU PRO GLU TYR ASP TRP PRO SEQRES 51 A 809 ALA VAL ASP ASP GLU SER LEU LEU ALA ALA LEU GLU THR SEQRES 52 A 809 TRP LEU LEU PRO HIS MET THR GLY VAL HIS SER LEU ARG SEQRES 53 A 809 GLY LEU LYS SER LEU ASP ILE TYR GLN ALA LEU ARG GLY SEQRES 54 A 809 LEU LEU ASP TRP GLY MET GLN GLN ARG LEU ASP SER GLU SEQRES 55 A 809 LEU PRO ALA HIS TYR THR VAL PRO THR GLY SER ARG ILE SEQRES 56 A 809 ALA ILE ARG TYR HIS GLU ASP ASN PRO PRO ALA LEU ALA SEQRES 57 A 809 VAL ARG MET GLN GLU MET PHE GLY GLU ALA THR ASN PRO SEQRES 58 A 809 THR ILE ALA GLN GLY ARG VAL PRO LEU VAL LEU GLU LEU SEQRES 59 A 809 LEU SER PRO ALA GLN ARG PRO LEU GLN ILE THR ARG ASP SEQRES 60 A 809 LEU SER ASP PHE TRP LYS GLY ALA TYR ARG GLU VAL GLN SEQRES 61 A 809 LYS GLU MET LYS GLY ARG TYR PRO LYS HIS VAL TRP PRO SEQRES 62 A 809 ASP ASP PRO ALA ASN THR ALA PRO THR ARG ARG THR LYS SEQRES 63 A 809 LYS TYR SER HET ADP A 901 39 HET ALF A 902 5 HET PO4 A 903 5 HET PO4 A 904 5 HET PO4 A 905 5 HET PO4 A 906 5 HET PO4 A 907 5 HET PO4 A 908 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 ALF AL F4 1- FORMUL 4 PO4 6(O4 P 3-) HELIX 1 AA1 VAL A 6 ALA A 8 5 3 HELIX 2 AA2 VAL A 9 ASP A 18 1 10 HELIX 3 AA3 TRP A 36 ALA A 43 1 8 HELIX 4 AA4 ALA A 60 LEU A 71 1 12 HELIX 5 AA5 GLY A 102 ASP A 111 1 10 HELIX 6 AA6 GLU A 124 ARG A 128 5 5 HELIX 7 AA7 SER A 129 GLN A 143 1 15 HELIX 8 AA8 ASN A 161 LEU A 168 1 8 HELIX 9 AA9 ARG A 195 GLU A 211 1 17 HELIX 10 AB1 GLY A 221 ILE A 236 1 16 HELIX 11 AB2 LEU A 251 LEU A 259 1 9 HELIX 12 AB3 ASN A 273 GLU A 276 5 4 HELIX 13 AB4 SER A 313 ARG A 323 1 11 HELIX 14 AB5 ALA A 337 ARG A 343 1 7 HELIX 15 AB6 PRO A 350 GLN A 354 5 5 HELIX 16 AB7 LEU A 357 TRP A 367 1 11 HELIX 17 AB8 PRO A 382 LEU A 396 1 15 HELIX 18 AB9 SER A 405 GLY A 415 1 11 HELIX 19 AC1 ASP A 417 SER A 426 1 10 HELIX 20 AC2 ASN A 429 GLU A 445 1 17 HELIX 21 AC3 ASP A 453 ARG A 460 1 8 HELIX 22 AC4 GLN A 462 ASN A 477 1 16 HELIX 23 AC5 ASP A 484 SER A 486 5 3 HELIX 24 AC6 LEU A 487 PHE A 496 1 10 HELIX 25 AC7 ASP A 524 HIS A 529 5 6 HELIX 26 AC8 LEU A 608 GLY A 620 1 13 HELIX 27 AC9 LEU A 621 LEU A 624 5 4 HELIX 28 AD1 THR A 627 LEU A 644 1 18 HELIX 29 AD2 ASP A 653 LEU A 665 1 13 HELIX 30 AD3 LEU A 666 THR A 670 5 5 HELIX 31 AD4 SER A 674 SER A 680 1 7 HELIX 32 AD5 ILE A 683 LEU A 690 1 8 HELIX 33 AD6 GLY A 694 GLU A 702 1 9 SHEET 1 AA1 8 ASN A 88 CYS A 89 0 SHEET 2 AA1 8 VAL A 80 ARG A 83 -1 N TYR A 82 O CYS A 89 SHEET 3 AA1 8 LEU A 96 VAL A 99 1 O VAL A 98 N GLY A 81 SHEET 4 AA1 8 LYS A 50 LEU A 54 1 N LEU A 53 O VAL A 99 SHEET 5 AA1 8 VAL A 117 LEU A 122 1 O ILE A 121 N LEU A 54 SHEET 6 AA1 8 LYS A 151 SER A 156 1 O LEU A 153 N VAL A 120 SHEET 7 AA1 8 GLN A 22 SER A 26 1 N VAL A 23 O ILE A 154 SHEET 8 AA1 8 VAL A 173 ILE A 175 1 O VAL A 174 N LEU A 24 SHEET 1 AA2 6 VAL A 183 TYR A 187 0 SHEET 2 AA2 6 GLY A 330 HIS A 334 1 O HIS A 334 N ARG A 186 SHEET 3 AA2 6 ILE A 284 ASP A 289 1 N VAL A 287 O LEU A 333 SHEET 4 AA2 6 SER A 214 PHE A 218 1 N LEU A 216 O VAL A 288 SHEET 5 AA2 6 ARG A 266 ALA A 271 1 O VAL A 269 N LEU A 215 SHEET 6 AA2 6 VAL A 240 LEU A 245 1 N CYS A 243 O VAL A 268 SHEET 1 AA3 3 GLN A 292 ASP A 299 0 SHEET 2 AA3 3 LEU A 304 ARG A 311 -1 O ILE A 308 N VAL A 295 SHEET 3 AA3 3 GLY A 540 SER A 541 1 O SER A 541 N LEU A 307 SHEET 1 AA4 2 LEU A 399 GLU A 400 0 SHEET 2 AA4 2 ARG A 403 LEU A 404 -1 O ARG A 403 N GLU A 400 SHEET 1 AA5 6 ILE A 500 ARG A 503 0 SHEET 2 AA5 6 ARG A 509 LEU A 512 -1 O GLN A 511 N ARG A 502 SHEET 3 AA5 6 ALA A 518 MET A 519 -1 O ALA A 518 N TYR A 510 SHEET 4 AA5 6 ALA A 551 GLU A 558 1 O LEU A 552 N MET A 519 SHEET 5 AA5 6 TRP A 531 LEU A 538 -1 N LEU A 538 O ALA A 551 SHEET 6 AA5 6 ILE A 500 ARG A 503 -1 N ALA A 501 O LEU A 532 SHEET 1 AA6 3 GLN A 568 VAL A 573 0 SHEET 2 AA6 3 ALA A 584 ILE A 590 -1 O ARG A 587 N SER A 570 SHEET 3 AA6 3 LEU A 593 PRO A 599 -1 O GLN A 598 N ARG A 586 SHEET 1 AA7 2 HIS A 706 THR A 708 0 SHEET 2 AA7 2 ARG A 714 ALA A 716 -1 O ILE A 715 N TYR A 707 SHEET 1 AA8 2 THR A 742 ILE A 743 0 SHEET 2 AA8 2 VAL A 748 PRO A 749 -1 O VAL A 748 N ILE A 743 SHEET 1 AA9 2 LEU A 752 GLU A 753 0 SHEET 2 AA9 2 THR A 765 ARG A 766 -1 O ARG A 766 N LEU A 752 LINK N GLY A 32 O1A ADP A 901 1555 1555 1.30 LINK NH1 ARG A 255 N1 ADP A 901 1555 1555 1.35 SITE 1 AC1 14 PRO A 28 GLY A 30 ALA A 31 GLY A 32 SITE 2 AC1 14 LYS A 33 SER A 34 THR A 35 ARG A 67 SITE 3 AC1 14 ARG A 255 THR A 277 THR A 280 GLU A 282 SITE 4 AC1 14 ARG A 326 ALF A 902 SITE 1 AC2 7 LYS A 33 SER A 34 ASP A 123 GLU A 124 SITE 2 AC2 7 THR A 277 SER A 278 ADP A 901 SITE 1 AC3 4 ARG A 195 ARG A 311 GLN A 340 ARG A 343 SITE 1 AC4 4 GLY A 221 VAL A 222 GLY A 223 ARG A 294 SITE 1 AC5 3 ARG A 195 ARG A 311 PO4 A 906 SITE 1 AC6 2 ARG A 311 PO4 A 905 SITE 1 AC7 4 ARG A 587 THR A 594 TYR A 647 ARG A 698 SITE 1 AC8 3 TRP A 626 GLU A 631 ARG A 634 CRYST1 48.550 106.372 180.005 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005555 0.00000