HEADER HYDROLASE 20-AUG-18 6HEH TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF USP28 (INSERTION DELETED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 28,UBIQUITIN COMPND 3 CARBOXYL-TERMINAL HYDROLASE 28; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 28,UBIQUITIN THIOESTERASE 28, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 28,DEUBIQUITINATING ENZYME 28, COMPND 7 UBIQUITIN THIOESTERASE 28,UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 28; COMPND 8 EC: 3.4.19.12,3.4.19.12; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP28, KIAA1515; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLACI KEYWDS UBIQUITIN, USP, UBIQUITIN-SPECIFIC PROTEASE, DUB, DEUBIQUITINASE, KEYWDS 2 PROTEASE, ISOPEPTIDASE, USP28, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GERSCH,D.KOMANDER REVDAT 4 17-JAN-24 6HEH 1 REMARK REVDAT 3 15-MAY-19 6HEH 1 JRNL REVDAT 2 10-APR-19 6HEH 1 JRNL REVDAT 1 27-MAR-19 6HEH 0 JRNL AUTH M.GERSCH,J.L.WAGSTAFF,A.V.TOMS,B.GRAVES,S.M.V.FREUND, JRNL AUTH 2 D.KOMANDER JRNL TITL DISTINCT USP25 AND USP28 OLIGOMERIZATION STATES REGULATE JRNL TITL 2 DEUBIQUITINATING ACTIVITY. JRNL REF MOL.CELL V. 74 436 2019 JRNL REFN ISSN 1097-2765 JRNL PMID 30926242 JRNL DOI 10.1016/J.MOLCEL.2019.02.030 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.5656 - 4.8687 0.99 2744 152 0.1999 0.1992 REMARK 3 2 4.8687 - 3.8649 1.00 2627 144 0.1554 0.1831 REMARK 3 3 3.8649 - 3.3765 1.00 2572 157 0.1786 0.2272 REMARK 3 4 3.3765 - 3.0678 1.00 2567 144 0.2083 0.2115 REMARK 3 5 3.0678 - 2.8479 1.00 2564 149 0.2126 0.2172 REMARK 3 6 2.8479 - 2.6800 1.00 2549 116 0.2231 0.2459 REMARK 3 7 2.6800 - 2.5458 1.00 2552 138 0.2284 0.2768 REMARK 3 8 2.5458 - 2.4350 1.00 2569 124 0.2316 0.2690 REMARK 3 9 2.4350 - 2.3413 1.00 2530 120 0.2318 0.2554 REMARK 3 10 2.3413 - 2.2605 0.99 2555 126 0.2523 0.2715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2815 REMARK 3 ANGLE : 0.600 3817 REMARK 3 CHIRALITY : 0.038 396 REMARK 3 PLANARITY : 0.004 496 REMARK 3 DIHEDRAL : 23.220 1002 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27219 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HEI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 8000, 100 MM SODIUM REMARK 280 CHLORIDE, 200 MM LITHIUM SULFATE, 100 MM MES PH 6.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.57600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 94.57600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.57600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 94.57600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 94.57600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 94.57600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 94.57600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 94.57600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 94.57600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 94.57600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 94.57600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 94.57600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 141.86400 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 47.28800 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 141.86400 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 141.86400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 47.28800 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 47.28800 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 47.28800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 47.28800 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 47.28800 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 47.28800 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 141.86400 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 141.86400 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 47.28800 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 141.86400 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 47.28800 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 47.28800 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 47.28800 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 47.28800 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 141.86400 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 141.86400 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 141.86400 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 94.57600 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 94.57600 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 94.57600 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 94.57600 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 94.57600 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 94.57600 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 94.57600 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 94.57600 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 94.57600 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 94.57600 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 94.57600 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 94.57600 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 94.57600 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 47.28800 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 141.86400 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 47.28800 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 47.28800 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 141.86400 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 47.28800 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 141.86400 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 141.86400 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 47.28800 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 141.86400 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 47.28800 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 47.28800 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 141.86400 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 47.28800 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 47.28800 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 141.86400 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 141.86400 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 47.28800 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 141.86400 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 47.28800 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 141.86400 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 47.28800 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 47.28800 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 47.28800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1028 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 148 REMARK 465 ASN A 278 REMARK 465 SER A 279 REMARK 465 PRO A 280 REMARK 465 ARG A 281 REMARK 465 ASN A 282 REMARK 465 GLY A 300 REMARK 465 VAL A 301 REMARK 465 ARG A 302 REMARK 465 GLU A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 PRO A 306 REMARK 465 GLU A 336 REMARK 465 GLY A 337 REMARK 465 ASP A 338 REMARK 465 VAL A 339 REMARK 465 GLU A 340 REMARK 465 LEU A 341 REMARK 465 LEU A 342 REMARK 465 PRO A 343 REMARK 465 SER A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 SER A 347 REMARK 465 VAL A 348 REMARK 465 LYS A 349 REMARK 465 TYR A 350 REMARK 465 GLY A 351 REMARK 465 GLY A 402 REMARK 465 ALA A 657 REMARK 465 GLU A 658 REMARK 465 ALA A 659 REMARK 465 ALA A 660 REMARK 465 PRO A 661 REMARK 465 THR A 662 REMARK 465 GLU A 663 REMARK 465 SER A 664 REMARK 465 ASP A 665 REMARK 465 GLN A 666 REMARK 465 CYS A 701 REMARK 465 LYS A 702 REMARK 465 ILE A 703 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 169 CG OD1 ND2 REMARK 470 GLN A 197 CG CD OE1 NE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 SER A 248 OG REMARK 470 SER A 249 OG REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 VAL A 275 CG1 CG2 REMARK 470 VAL A 277 CG1 CG2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 SER A 284 OG REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 PHE A 307 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 309 CG OD1 ND2 REMARK 470 ASN A 321 CG OD1 ND2 REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 GLN A 374 CG CD OE1 NE2 REMARK 470 SER A 375 OG REMARK 470 LEU A 376 CG CD1 CD2 REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 SER A 403 OG REMARK 470 MET A 667 CG SD CE REMARK 470 GLU A 671 CG CD OE1 OE2 REMARK 470 GLU A 676 CG CD OE1 OE2 REMARK 470 GLU A 697 CG CD OE1 OE2 REMARK 470 GLU A 698 CG CD OE1 OE2 REMARK 470 GLN A 699 CG CD OE1 NE2 REMARK 470 SER A 700 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 248 72.45 -100.10 REMARK 500 SER A 249 -115.05 61.81 REMARK 500 ASN A 321 -133.73 55.33 REMARK 500 SER A 375 -9.48 73.48 REMARK 500 ALA A 598 -96.23 -127.12 REMARK 500 ASP A 618 -120.83 54.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1028 DISTANCE = 6.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 802 DBREF 6HEH A 149 399 UNP Q96RU2 UBP28_HUMAN 149 399 DBREF 6HEH A 580 703 UNP Q96RU2 UBP28_HUMAN 580 703 SEQADV 6HEH GLY A 148 UNP Q96RU2 EXPRESSION TAG SEQADV 6HEH GLY A 400 UNP Q96RU2 LINKER SEQADV 6HEH SER A 401 UNP Q96RU2 LINKER SEQADV 6HEH GLY A 402 UNP Q96RU2 LINKER SEQADV 6HEH SER A 403 UNP Q96RU2 LINKER SEQADV 6HEH GLY A 404 UNP Q96RU2 LINKER SEQADV 6HEH SER A 405 UNP Q96RU2 LINKER SEQRES 1 A 382 GLY PRO ASN PRO ASN ASP TRP ARG ARG VAL ASP GLY TRP SEQRES 2 A 382 PRO VAL GLY LEU LYS ASN VAL GLY ASN THR CYS TRP PHE SEQRES 3 A 382 SER ALA VAL ILE GLN SER LEU PHE GLN LEU PRO GLU PHE SEQRES 4 A 382 ARG ARG LEU VAL LEU SER TYR SER LEU PRO GLN ASN VAL SEQRES 5 A 382 LEU GLU ASN CYS ARG SER HIS THR GLU LYS ARG ASN ILE SEQRES 6 A 382 MET PHE MET GLN GLU LEU GLN TYR LEU PHE ALA LEU MET SEQRES 7 A 382 MET GLY SER ASN ARG LYS PHE VAL ASP PRO SER ALA ALA SEQRES 8 A 382 LEU ASP LEU LEU LYS GLY ALA PHE ARG SER SER GLU GLU SEQRES 9 A 382 GLN GLN GLN ASP VAL SER GLU PHE THR HIS LYS LEU LEU SEQRES 10 A 382 ASP TRP LEU GLU ASP ALA PHE GLN LEU ALA VAL ASN VAL SEQRES 11 A 382 ASN SER PRO ARG ASN LYS SER GLU ASN PRO MET VAL GLN SEQRES 12 A 382 LEU PHE TYR GLY THR PHE LEU THR GLU GLY VAL ARG GLU SEQRES 13 A 382 GLY LYS PRO PHE CYS ASN ASN GLU THR PHE GLY GLN TYR SEQRES 14 A 382 PRO LEU GLN VAL ASN GLY TYR ARG ASN LEU ASP GLU CYS SEQRES 15 A 382 LEU GLU GLY ALA MET VAL GLU GLY ASP VAL GLU LEU LEU SEQRES 16 A 382 PRO SER ASP HIS SER VAL LYS TYR GLY GLN GLU ARG TRP SEQRES 17 A 382 PHE THR LYS LEU PRO PRO VAL LEU THR PHE GLU LEU SER SEQRES 18 A 382 ARG PHE GLU PHE ASN GLN SER LEU GLY GLN PRO GLU LYS SEQRES 19 A 382 ILE HIS ASN LYS LEU GLU PHE PRO GLN ILE ILE TYR MET SEQRES 20 A 382 ASP ARG TYR MET TYR GLY SER GLY SER GLY SER ARG GLN SEQRES 21 A 382 VAL PRO TYR ARG LEU HIS ALA VAL LEU VAL HIS GLU GLY SEQRES 22 A 382 GLN ALA ASN ALA GLY HIS TYR TRP ALA TYR ILE TYR ASN SEQRES 23 A 382 GLN PRO ARG GLN SER TRP LEU LYS TYR ASN ASP ILE SER SEQRES 24 A 382 VAL THR GLU SER SER TRP GLU GLU VAL GLU ARG ASP SER SEQRES 25 A 382 TYR GLY GLY LEU ARG ASN VAL SER ALA TYR CYS LEU MET SEQRES 26 A 382 TYR ILE ASN ASP LYS LEU PRO TYR PHE ASN ALA GLU ALA SEQRES 27 A 382 ALA PRO THR GLU SER ASP GLN MET SER GLU VAL GLU ALA SEQRES 28 A 382 LEU SER VAL GLU LEU LYS HIS TYR ILE GLN GLU ASP ASN SEQRES 29 A 382 TRP ARG PHE GLU GLN GLU VAL GLU GLU TRP GLU GLU GLU SEQRES 30 A 382 GLN SER CYS LYS ILE HET EDO A 801 4 HET CL A 802 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 CL CL 1- FORMUL 4 HOH *128(H2 O) HELIX 1 AA1 ASN A 150 ARG A 155 5 6 HELIX 2 AA2 THR A 170 GLN A 182 1 13 HELIX 3 AA3 LEU A 183 SER A 192 1 10 HELIX 4 AA4 PRO A 196 ASN A 202 1 7 HELIX 5 AA5 SER A 205 SER A 228 1 24 HELIX 6 AA6 PRO A 235 GLY A 244 1 10 HELIX 7 AA7 GLN A 252 ASN A 276 1 25 HELIX 8 AA8 ASN A 286 TYR A 293 1 8 HELIX 9 AA9 ASN A 325 MET A 334 1 10 HELIX 10 AB1 ASP A 395 MET A 398 5 4 HELIX 11 AB2 SER A 625 TYR A 634 1 10 HELIX 12 AB3 LEU A 652 ASN A 656 5 5 HELIX 13 AB4 SER A 668 ALA A 672 1 5 HELIX 14 AB5 SER A 674 SER A 700 1 27 SHEET 1 AA1 2 GLY A 163 LEU A 164 0 SHEET 2 AA1 2 PHE A 232 VAL A 233 1 O VAL A 233 N GLY A 163 SHEET 1 AA2 3 ASN A 309 PHE A 313 0 SHEET 2 AA2 3 GLY A 294 GLU A 299 -1 N PHE A 296 O GLU A 311 SHEET 3 AA2 3 GLU A 353 LYS A 358 -1 O THR A 357 N THR A 295 SHEET 1 AA3 5 TYR A 316 GLN A 319 0 SHEET 2 AA3 5 VAL A 362 SER A 368 1 O GLU A 366 N LEU A 318 SHEET 3 AA3 5 VAL A 640 ASN A 649 -1 O TYR A 647 N LEU A 363 SHEET 4 AA3 5 PRO A 583 GLU A 593 -1 N HIS A 587 O MET A 646 SHEET 5 AA3 5 ILE A 391 TYR A 393 -1 N ILE A 392 O TYR A 584 SHEET 1 AA4 7 TYR A 316 GLN A 319 0 SHEET 2 AA4 7 VAL A 362 SER A 368 1 O GLU A 366 N LEU A 318 SHEET 3 AA4 7 VAL A 640 ASN A 649 -1 O TYR A 647 N LEU A 363 SHEET 4 AA4 7 PRO A 583 GLU A 593 -1 N HIS A 587 O MET A 646 SHEET 5 AA4 7 HIS A 600 ASN A 607 -1 O TRP A 602 N VAL A 591 SHEET 6 AA4 7 SER A 612 ASN A 617 -1 O SER A 612 N ASN A 607 SHEET 7 AA4 7 SER A 620 GLU A 623 -1 O THR A 622 N LYS A 615 SHEET 1 AA5 2 PHE A 370 PHE A 372 0 SHEET 2 AA5 2 PRO A 379 LYS A 381 -1 O GLU A 380 N GLU A 371 SITE 1 AC1 2 ASN A 639 ASP A 650 SITE 1 AC2 2 GLN A 390 ARG A 638 CRYST1 189.152 189.152 189.152 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005287 0.00000