HEADER TRANSFERASE 20-AUG-18 6HET TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 THE NVP-BHG712 DERIVATIVE AT055 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: EPHA2, ECK; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,A.TROESTER,K.WITT,V.L.LINHARD,S.L.GANDE,K.SAXENA, AUTHOR 2 H.SCHWALBE REVDAT 2 17-JAN-24 6HET 1 REMARK REVDAT 1 28-AUG-19 6HET 0 JRNL AUTH A.TROESTER,D.KUDLINZKI,K.SAXENA,S.GANDE,H.SCHWALBE JRNL TITL EFFECTS OF NVP-BHG712 CHEMICAL MODIFICATIONS ON EPHA2 JRNL TITL 2 BINDING AND AFFINITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 79982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.620 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4487 - 2.9782 0.99 5296 142 0.1443 0.1682 REMARK 3 2 2.9782 - 2.3639 0.99 5247 141 0.1673 0.1881 REMARK 3 3 2.3639 - 2.0651 1.00 5266 142 0.1545 0.1854 REMARK 3 4 2.0651 - 1.8763 1.00 5262 142 0.1642 0.1864 REMARK 3 5 1.8763 - 1.7419 0.99 5222 140 0.1811 0.2042 REMARK 3 6 1.7419 - 1.6392 0.99 5215 141 0.2302 0.2580 REMARK 3 7 1.6392 - 1.5571 0.99 5221 140 0.2278 0.2683 REMARK 3 8 1.5571 - 1.4893 0.99 5196 140 0.2353 0.2590 REMARK 3 9 1.4893 - 1.4319 0.99 5211 140 0.2574 0.2746 REMARK 3 10 1.4319 - 1.3825 0.99 5203 140 0.2812 0.2897 REMARK 3 11 1.3825 - 1.3393 0.98 5201 140 0.3035 0.3101 REMARK 3 12 1.3393 - 1.3010 0.98 5141 139 0.3209 0.3481 REMARK 3 13 1.3010 - 1.2668 0.98 5087 137 0.3457 0.3264 REMARK 3 14 1.2668 - 1.2359 0.98 5174 139 0.3526 0.3523 REMARK 3 15 1.2359 - 1.2078 0.94 4944 133 0.3716 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2326 REMARK 3 ANGLE : 1.126 3152 REMARK 3 CHIRALITY : 0.082 332 REMARK 3 PLANARITY : 0.020 399 REMARK 3 DIHEDRAL : 17.533 1403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.0214 -29.4759 80.7394 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.2294 REMARK 3 T33: 0.4214 T12: -0.0240 REMARK 3 T13: 0.0056 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 0.0247 L22: 0.2839 REMARK 3 L33: 0.9759 L12: 0.0297 REMARK 3 L13: -0.0149 L23: -0.4557 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.2068 S13: 0.2481 REMARK 3 S21: -0.5039 S22: 0.2976 S23: 0.0016 REMARK 3 S31: 0.1474 S32: -0.0506 S33: -0.1491 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 619 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1272 -26.3596 82.4072 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.2516 REMARK 3 T33: 0.3523 T12: -0.0326 REMARK 3 T13: 0.0352 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 2.6823 L22: 0.8267 REMARK 3 L33: 1.2397 L12: -0.9244 REMARK 3 L13: 1.5630 L23: -0.5710 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: -0.2322 S13: -0.2172 REMARK 3 S21: -0.2380 S22: 0.2183 S23: -0.4015 REMARK 3 S31: 0.4283 S32: -0.0611 S33: -0.2302 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 641 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.7522 -26.4964 91.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.1678 REMARK 3 T33: 0.2965 T12: 0.0257 REMARK 3 T13: 0.0024 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7510 L22: 2.0763 REMARK 3 L33: 2.3154 L12: 0.3561 REMARK 3 L13: 0.1449 L23: -1.2246 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.0928 S13: 0.0058 REMARK 3 S21: 0.0850 S22: 0.2126 S23: 0.1671 REMARK 3 S31: 0.0331 S32: 0.0026 S33: -0.1531 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 687 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.2604 -21.4848 83.7283 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.1540 REMARK 3 T33: 0.2300 T12: -0.0186 REMARK 3 T13: -0.0192 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.4873 L22: 5.7857 REMARK 3 L33: 0.4759 L12: -0.4056 REMARK 3 L13: -0.3425 L23: -0.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.1014 S13: -0.1945 REMARK 3 S21: -0.0575 S22: -0.0387 S23: 0.4062 REMARK 3 S31: 0.1823 S32: -0.0492 S33: 0.0481 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 688 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4429 -11.2191 82.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.1717 REMARK 3 T33: 0.1332 T12: 0.0106 REMARK 3 T13: 0.0015 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.6410 L22: 2.7490 REMARK 3 L33: 0.6560 L12: 1.1327 REMARK 3 L13: -0.3672 L23: -0.2417 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: 0.0585 S13: -0.0689 REMARK 3 S21: -0.2822 S22: 0.0353 S23: -0.0742 REMARK 3 S31: 0.1025 S32: 0.0948 S33: 0.0060 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.3951 -5.4842 87.3484 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.1521 REMARK 3 T33: 0.1342 T12: -0.0033 REMARK 3 T13: 0.0015 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.5192 L22: 0.9899 REMARK 3 L33: 0.9208 L12: 0.1048 REMARK 3 L13: -0.1967 L23: 0.1322 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0498 S13: -0.0286 REMARK 3 S21: -0.0724 S22: 0.0157 S23: 0.0273 REMARK 3 S31: 0.0632 S32: -0.0445 S33: 0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 756 THROUGH 795 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.7173 -7.4297 103.7324 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.1969 REMARK 3 T33: 0.1343 T12: -0.0065 REMARK 3 T13: 0.0001 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.8026 L22: 0.3771 REMARK 3 L33: 1.2829 L12: 0.4020 REMARK 3 L13: 0.5027 L23: 0.3106 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.1294 S13: -0.0786 REMARK 3 S21: 0.0891 S22: -0.0470 S23: -0.0348 REMARK 3 S31: 0.1782 S32: -0.0759 S33: -0.0103 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 796 THROUGH 831 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.9515 -0.0825 99.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1722 REMARK 3 T33: 0.1383 T12: 0.0085 REMARK 3 T13: -0.0033 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.2221 L22: 1.0526 REMARK 3 L33: 1.0478 L12: 0.1006 REMARK 3 L13: 0.0809 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: -0.1290 S13: -0.0535 REMARK 3 S21: 0.0626 S22: 0.0157 S23: -0.1059 REMARK 3 S31: 0.0418 S32: 0.1230 S33: 0.0301 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 832 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1290 8.3166 97.9916 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1419 REMARK 3 T33: 0.1392 T12: 0.0088 REMARK 3 T13: -0.0052 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.6292 L22: 1.7752 REMARK 3 L33: 1.2014 L12: 0.1664 REMARK 3 L13: 0.4441 L23: -0.3837 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: -0.1452 S13: 0.1634 REMARK 3 S21: 0.0039 S22: 0.0176 S23: 0.0093 REMARK 3 S31: 0.0097 S32: 0.0054 S33: 0.0293 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 864 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.8210 9.0816 84.1233 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.1604 REMARK 3 T33: 0.1975 T12: 0.0093 REMARK 3 T13: -0.0265 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.8680 L22: 3.4257 REMARK 3 L33: 3.6375 L12: 1.5024 REMARK 3 L13: -1.5622 L23: -2.5268 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.1920 S13: 0.3191 REMARK 3 S21: -0.1805 S22: 0.1268 S23: 0.1766 REMARK 3 S31: -0.1621 S32: -0.1857 S33: -0.0414 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7514 15.9406 91.2504 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.2843 REMARK 3 T33: 0.4173 T12: -0.0311 REMARK 3 T13: -0.0077 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.4530 L22: 1.1085 REMARK 3 L33: 0.6953 L12: 0.1176 REMARK 3 L13: -0.5000 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: -0.2467 S12: -0.2067 S13: 0.0536 REMARK 3 S21: 0.0064 S22: 0.1702 S23: -0.4450 REMARK 3 S31: -0.2232 S32: 0.3244 S33: 0.0528 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03318 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 2.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.208 REMARK 200 RESOLUTION RANGE LOW (A) : 38.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.590 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.49 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5 % MPD/PEG1000/PEG3350 (MD), 0.1 M REMARK 280 AMINO ACIDS MIX (MD), 0.1 M MES PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.70200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 VAL A 601 REMARK 465 LEU A 602 REMARK 465 LYS A 603 REMARK 465 PHE A 604 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 LYS A 639 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 LYS A 778 REMARK 465 ILE A 779 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 738 -13.20 78.24 REMARK 500 ASP A 739 39.25 -140.42 REMARK 500 TRP A 819 -127.72 53.90 REMARK 500 ALA A 877 72.37 -111.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 721 0.18 SIDE CHAIN REMARK 500 ARG A 743 0.18 SIDE CHAIN REMARK 500 ARG A 792 0.10 SIDE CHAIN REMARK 500 ARG A 860 0.10 SIDE CHAIN REMARK 500 ARG A 876 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 743 -10.29 REMARK 500 ARG A 743 -10.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G0Q A 1000 DBREF 6HET A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 6FNF GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET G0Q A1000 68 HETNAM G0Q ~{N}-(3-CHLOROPHENYL)-4-METHYL-3-[(1-METHYL-6-PYRIDIN- HETNAM 2 G0Q 3-YL-PYRAZOLO[3,4-D]PYRIMIDIN-4-YL)AMINO]BENZAMIDE FORMUL 2 G0Q C25 H20 CL N7 O FORMUL 3 HOH *241(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 PHE A 670 1 18 HELIX 3 AA3 ALA A 699 LYS A 707 1 9 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 PRO A 780 THR A 784 5 5 HELIX 7 AA7 ALA A 785 ARG A 792 1 8 HELIX 8 AA8 THR A 795 THR A 812 1 18 HELIX 9 AA9 SER A 822 ASP A 832 1 11 HELIX 10 AB1 PRO A 843 TRP A 854 1 12 HELIX 11 AB2 GLU A 857 ARG A 861 5 5 HELIX 12 AB3 LYS A 863 ALA A 877 1 15 HELIX 13 AB4 PRO A 878 THR A 883 5 6 SHEET 1 AA1 5 VAL A 613 GLY A 622 0 SHEET 2 AA1 5 GLY A 625 LEU A 632 -1 O VAL A 627 N ILE A 619 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 -1.10 SITE 1 AC1 16 VAL A 627 ALA A 644 GLU A 663 MET A 667 SITE 2 AC1 16 ILE A 676 THR A 692 GLU A 693 TYR A 694 SITE 3 AC1 16 MET A 695 TYR A 735 LEU A 746 SER A 756 SITE 4 AC1 16 ASP A 757 PHE A 758 HOH A1126 HOH A1286 CRYST1 32.826 107.404 40.577 90.00 108.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030464 0.000000 0.010323 0.00000 SCALE2 0.000000 0.009311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026021 0.00000