HEADER ONCOPROTEIN 21-AUG-18 6HFA TITLE CRYSTAL STRUCTURE OF HDM2 IN COMPLEX WITH A C-TERMINAL TRIUREA CAPPED TITLE 2 PEPTIDE CHIMERA FOLDAMER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 17-111; COMPND 5 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,RING-TYPE E3 COMPND 6 UBIQUITIN TRANSFERASE MDM2,P53-BINDING PROTEIN MDM2; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: LM266, 1-[(2~{S})-2-AZANYL-3-METHYL-BUTYL]UREA; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS PROTEIN FOLDAMER COMPLEX, PROTEIN PROTEIN INTERACTION INHIBITOR, UREA KEYWDS 2 BASED CHIMERA FOLDAMER, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BURATTO,L.MAURAN,S.GOUDREAU,S.FRIBOURG,G.GUICHARD REVDAT 4 15-NOV-23 6HFA 1 LINK ATOM REVDAT 3 24-MAY-23 6HFA 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQRES HET HETNAM FORMUL REVDAT 3 3 1 LINK SITE ATOM REVDAT 2 20-JAN-21 6HFA 1 JRNL REVDAT 1 08-JUL-20 6HFA 0 JRNL AUTH L.CUSSOL,L.MAURAN-AMBROSINO,J.BURATTO,A.Y.BELORUSOVA, JRNL AUTH 2 M.NEUVILLE,J.OSZ,S.FRIBOURG,J.FREMAUX,C.DOLAIN,S.R.GOUDREAU, JRNL AUTH 3 N.ROCHEL,G.GUICHARD JRNL TITL STRUCTURAL BASIS FOR ALPHA-HELIX MIMICRY AND INHIBITION OF JRNL TITL 2 PROTEIN-PROTEIN INTERACTIONS WITH OLIGOUREA FOLDAMERS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 32935897 JRNL DOI 10.1002/ANIE.202008992 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 17262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3505 - 3.2524 1.00 2937 155 0.1629 0.2030 REMARK 3 2 3.2524 - 2.5816 0.99 2778 146 0.1915 0.2469 REMARK 3 3 2.5816 - 2.2553 0.99 2761 146 0.2159 0.2520 REMARK 3 4 2.2553 - 2.0491 0.99 2715 142 0.2079 0.2772 REMARK 3 5 2.0491 - 1.9022 0.98 2698 142 0.2426 0.2905 REMARK 3 6 1.9022 - 1.7901 0.92 2510 132 0.3109 0.3697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1616 REMARK 3 ANGLE : 1.014 2181 REMARK 3 CHIRALITY : 0.056 250 REMARK 3 PLANARITY : 0.008 271 REMARK 3 DIHEDRAL : 14.516 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6370 1.8563 -9.8267 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.2675 REMARK 3 T33: 0.2580 T12: 0.0088 REMARK 3 T13: -0.0026 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.0528 L22: 0.4390 REMARK 3 L33: 0.7705 L12: -0.1017 REMARK 3 L13: 0.1537 L23: -0.6961 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.1457 S13: 0.0253 REMARK 3 S21: -0.0478 S22: -0.0986 S23: -0.0703 REMARK 3 S31: -0.0320 S32: 0.0734 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5489 10.2043 -7.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.2888 REMARK 3 T33: 0.2850 T12: 0.0174 REMARK 3 T13: 0.0113 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.0106 L22: 0.0730 REMARK 3 L33: 0.1919 L12: -0.0237 REMARK 3 L13: 0.0287 L23: -0.1185 REMARK 3 S TENSOR REMARK 3 S11: -0.1520 S12: -0.0810 S13: -0.1524 REMARK 3 S21: -0.0361 S22: 0.3877 S23: 0.2582 REMARK 3 S31: -0.1819 S32: -0.2386 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7744 2.6300 -0.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.3342 T22: 0.2793 REMARK 3 T33: 0.3586 T12: 0.0831 REMARK 3 T13: 0.0039 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0162 L22: 0.0483 REMARK 3 L33: 0.0158 L12: -0.0090 REMARK 3 L13: 0.0096 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.1634 S13: -0.4231 REMARK 3 S21: 0.2292 S22: 0.1869 S23: 0.0694 REMARK 3 S31: 0.4116 S32: 0.5347 S33: 0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2047 9.6338 -0.2485 REMARK 3 T TENSOR REMARK 3 T11: 0.2821 T22: 0.3336 REMARK 3 T33: 0.2497 T12: 0.0181 REMARK 3 T13: -0.0180 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.2168 L22: 0.2540 REMARK 3 L33: 0.5335 L12: 0.1481 REMARK 3 L13: 0.0802 L23: 0.3817 REMARK 3 S TENSOR REMARK 3 S11: -0.2276 S12: -0.1490 S13: 0.1748 REMARK 3 S21: 0.2794 S22: 0.1908 S23: -0.0942 REMARK 3 S31: -0.0597 S32: -0.0485 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5172 25.7633 -28.9787 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.2578 REMARK 3 T33: 0.3680 T12: -0.0352 REMARK 3 T13: 0.0410 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2480 L22: 0.8062 REMARK 3 L33: 0.4459 L12: -0.0413 REMARK 3 L13: 0.2057 L23: 0.4223 REMARK 3 S TENSOR REMARK 3 S11: 0.3467 S12: -0.3101 S13: -0.2178 REMARK 3 S21: -0.2479 S22: -0.2338 S23: -0.1193 REMARK 3 S31: -0.3194 S32: 0.0864 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8203 18.1261 -24.3653 REMARK 3 T TENSOR REMARK 3 T11: 0.2901 T22: 0.2786 REMARK 3 T33: 0.3369 T12: 0.0338 REMARK 3 T13: -0.0168 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0808 L22: 0.1349 REMARK 3 L33: 0.2169 L12: -0.0492 REMARK 3 L13: 0.0644 L23: -0.1920 REMARK 3 S TENSOR REMARK 3 S11: -0.1454 S12: 0.0253 S13: -0.0028 REMARK 3 S21: -0.0536 S22: 0.0132 S23: 0.0359 REMARK 3 S31: -0.0737 S32: -0.2551 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6982 8.1834 -22.4658 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.3112 REMARK 3 T33: 0.2203 T12: 0.0016 REMARK 3 T13: -0.0123 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4014 L22: 0.3475 REMARK 3 L33: 0.2127 L12: 0.2112 REMARK 3 L13: 0.3710 L23: 0.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: -0.0016 S13: -0.0024 REMARK 3 S21: -0.1612 S22: 0.1287 S23: 0.1213 REMARK 3 S31: 0.1615 S32: -0.1260 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7005 0.8346 -29.9967 REMARK 3 T TENSOR REMARK 3 T11: 0.4300 T22: 0.4038 REMARK 3 T33: 0.4219 T12: -0.0372 REMARK 3 T13: -0.0739 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.0423 L22: 0.0412 REMARK 3 L33: 0.0437 L12: 0.0495 REMARK 3 L13: 0.0391 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: 0.3793 S12: -0.2901 S13: -0.3077 REMARK 3 S21: -0.2198 S22: 0.2149 S23: 0.2180 REMARK 3 S31: 0.0719 S32: -0.1491 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9650 8.1091 -33.4223 REMARK 3 T TENSOR REMARK 3 T11: 0.4377 T22: 0.3810 REMARK 3 T33: 0.3750 T12: -0.0371 REMARK 3 T13: -0.0768 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.0246 L22: 0.0340 REMARK 3 L33: 0.0095 L12: -0.0246 REMARK 3 L13: -0.0143 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.4566 S12: -0.3187 S13: 0.2801 REMARK 3 S21: -0.6031 S22: -0.1318 S23: 0.3299 REMARK 3 S31: -0.1088 S32: -0.3505 S33: 0.0012 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9206 5.4001 -32.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.4914 T22: 0.3773 REMARK 3 T33: 0.3115 T12: 0.1008 REMARK 3 T13: -0.0031 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0499 L22: 0.0033 REMARK 3 L33: 0.0108 L12: -0.0172 REMARK 3 L13: 0.0329 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.3207 S12: 0.3905 S13: -0.0849 REMARK 3 S21: -0.6529 S22: -0.2316 S23: -0.2663 REMARK 3 S31: -0.1796 S32: 0.0070 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0720 18.8047 -33.8409 REMARK 3 T TENSOR REMARK 3 T11: 0.3395 T22: 0.3488 REMARK 3 T33: 0.3445 T12: -0.0452 REMARK 3 T13: 0.0251 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1647 L22: 0.1850 REMARK 3 L33: 0.3548 L12: -0.0009 REMARK 3 L13: -0.2629 L23: 0.1060 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: 0.2512 S13: 0.0579 REMARK 3 S21: -0.0625 S22: -0.2410 S23: -0.1724 REMARK 3 S31: -0.0614 S32: -0.0228 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8651 7.4937 -20.9232 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: 0.3247 REMARK 3 T33: 0.2911 T12: 0.0456 REMARK 3 T13: 0.0110 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.0288 L22: 0.0697 REMARK 3 L33: 0.0042 L12: 0.0369 REMARK 3 L13: -0.0217 L23: -0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.2272 S12: -0.2728 S13: -0.0022 REMARK 3 S21: 0.1925 S22: -0.1888 S23: -0.4056 REMARK 3 S31: 0.1891 S32: 0.3228 S33: -0.0005 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 17 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9453 16.7503 -12.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2123 REMARK 3 T33: 0.2334 T12: 0.0198 REMARK 3 T13: -0.0090 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.0212 L22: 0.0864 REMARK 3 L33: -0.0022 L12: 0.0516 REMARK 3 L13: 0.0073 L23: 0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.3402 S12: 0.0596 S13: 0.3403 REMARK 3 S21: -0.2600 S22: -0.0336 S23: 0.0979 REMARK 3 S31: 0.0717 S32: 0.1841 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 26:35 OR (RESID 36 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME C OR NAME O )) OR RESSEQ 37:43 REMARK 3 OR RESSEQ 45:50 OR (RESID 51 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 C OR NAME O )) OR RESSEQ 52:68 OR (RESID REMARK 3 69 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME C OR NAME O )) OR RESSEQ REMARK 3 70 OR (RESID 71 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 72:75 OR RESSEQ 77: REMARK 3 78 OR RESSEQ 80:95 OR (RESID 97 AND (NAME REMARK 3 N OR NAME CA OR NAME CB OR NAME C OR NAME REMARK 3 O )) OR (RESID 98 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 99:110)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 26:30 OR (RESID 31 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME CE OR NAME C OR REMARK 3 NAME O )) OR RESSEQ 32:43 OR RESSEQ 45:75 REMARK 3 OR RESSEQ 77:78 OR RESSEQ 80:95 OR RESSEQ REMARK 3 97:110)) REMARK 3 ATOM PAIRS NUMBER : 698 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 58 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9811 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 44.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90 MM HEPES, 1.26 M NA CITRATE, 10% REMARK 280 GLYCEROL. CRYO: +30% GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.06500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.06500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 HIS A 15 REMARK 465 MET A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 ILE A 19 REMARK 465 PRO A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 GLN A 24 REMARK 465 GLY B 14 REMARK 465 HIS B 15 REMARK 465 MET B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 ILE B 19 REMARK 465 PRO B 20 REMARK 465 ALA B 21 REMARK 465 SER B 22 REMARK 465 GLU B 23 REMARK 465 GLN B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 NZ REMARK 470 LYS A 36 CE NZ REMARK 470 LYS A 51 CE NZ REMARK 470 LYS A 70 CE NZ REMARK 470 LYS A 98 CE NZ REMARK 470 LYS B 36 CD CE NZ REMARK 470 LYS B 51 CD CE NZ REMARK 470 GLU B 69 CD OE1 OE2 REMARK 470 LYS B 70 CE NZ REMARK 470 GLN B 71 OE1 NE2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 201 O HOH C 204 2.01 REMARK 500 O HOH A 206 O HOH A 229 2.04 REMARK 500 OXT ASN A 111 O HOH A 201 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G2Z C 24 CA - C - N ANGL. DEV. = 29.3 DEGREES REMARK 500 G2Z C 25 CA - C - N ANGL. DEV. = 22.3 DEGREES REMARK 500 URV C 26 CA - C - N ANGL. DEV. = 27.1 DEGREES REMARK 500 G2Z D 24 CA - C - N ANGL. DEV. = 25.7 DEGREES REMARK 500 G2Z D 25 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 URV D 26 CA - C - N ANGL. DEV. = 27.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 47.42 -106.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 G2Z C 24 G2Z C 25 126.38 REMARK 500 G2Z C 25 URV C 26 133.98 REMARK 500 G2Z D 24 G2Z D 25 128.10 REMARK 500 G2Z D 25 URV D 26 144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 G2Z C 24 -30.79 REMARK 500 G2Z C 25 -23.88 REMARK 500 TRP D 23 10.11 REMARK 500 G2Z D 24 -29.12 REMARK 500 G2Z D 25 -17.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide TRP C 23 and G2B C REMARK 800 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues G2B C 24 and G2B C 25 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide TRP D 23 and G2B D REMARK 800 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues G2B D 24 and G2B D 25 DBREF 6HFA A 17 111 UNP Q00987 MDM2_HUMAN 23 117 DBREF 6HFA B 17 111 UNP Q00987 MDM2_HUMAN 23 117 DBREF 6HFA C 17 27 PDB 6HFA 6HFA 17 27 DBREF 6HFA D 17 27 PDB 6HFA 6HFA 17 27 SEQADV 6HFA GLY A 14 UNP Q00987 EXPRESSION TAG SEQADV 6HFA HIS A 15 UNP Q00987 EXPRESSION TAG SEQADV 6HFA MET A 16 UNP Q00987 EXPRESSION TAG SEQADV 6HFA ALA A 88 UNP Q00987 VAL 94 CONFLICT SEQADV 6HFA GLY B 14 UNP Q00987 EXPRESSION TAG SEQADV 6HFA HIS B 15 UNP Q00987 EXPRESSION TAG SEQADV 6HFA MET B 16 UNP Q00987 EXPRESSION TAG SEQADV 6HFA ALA B 88 UNP Q00987 VAL 94 CONFLICT SEQRES 1 A 98 GLY HIS MET SER GLN ILE PRO ALA SER GLU GLN GLU THR SEQRES 2 A 98 LEU VAL ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SEQRES 3 A 98 SER VAL GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU SEQRES 4 A 98 VAL LEU PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG SEQRES 5 A 98 LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER SEQRES 6 A 98 ASN ASP LEU LEU GLY ASP LEU PHE GLY ALA PRO SER PHE SEQRES 7 A 98 SER VAL LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR SEQRES 8 A 98 ARG ASN LEU VAL VAL VAL ASN SEQRES 1 B 98 GLY HIS MET SER GLN ILE PRO ALA SER GLU GLN GLU THR SEQRES 2 B 98 LEU VAL ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SEQRES 3 B 98 SER VAL GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU SEQRES 4 B 98 VAL LEU PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG SEQRES 5 B 98 LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER SEQRES 6 B 98 ASN ASP LEU LEU GLY ASP LEU PHE GLY ALA PRO SER PHE SEQRES 7 B 98 SER VAL LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR SEQRES 8 B 98 ARG ASN LEU VAL VAL VAL ASN SEQRES 1 C 11 THR SER PHE ALA GLU TYR TRP G2Z G2Z URV NH2 SEQRES 1 D 11 THR SER PHE ALA GLU TYR TRP G2Z G2Z URV NH2 HET G2Z C 24 7 HET G2Z C 25 7 HET URV C 26 9 HET NH2 C 27 1 HET G2Z D 24 7 HET G2Z D 25 7 HET URV D 26 9 HET NH2 D 27 1 HETNAM G2Z [(2~{S})-2-AZANYLPROPYL]CARBAMIC ACID HETNAM URV [(2~{S})-2-AZANYL-3-METHYL-BUTYL]CARBAMIC ACID HETNAM NH2 AMINO GROUP FORMUL 3 G2Z 4(C4 H10 N2 O2) FORMUL 3 URV 2(C6 H14 N2 O2) FORMUL 3 NH2 2(H2 N) FORMUL 5 HOH *65(H2 O) HELIX 1 AA1 LYS A 31 VAL A 41 1 11 HELIX 2 AA2 MET A 50 LYS A 64 1 15 HELIX 3 AA3 ASP A 80 GLY A 87 1 8 HELIX 4 AA4 GLU A 95 ASN A 106 1 12 HELIX 5 AA5 LYS B 31 SER B 40 1 10 HELIX 6 AA6 MET B 50 LYS B 64 1 15 HELIX 7 AA7 ASP B 80 GLY B 87 1 8 HELIX 8 AA8 GLU B 95 ARG B 105 1 11 HELIX 9 AA9 SER C 18 TRP C 23 1 6 HELIX 10 AB1 SER D 18 TRP D 23 1 6 SHEET 1 AA1 3 TYR A 48 THR A 49 0 SHEET 2 AA1 3 LEU A 27 PRO A 30 -1 N VAL A 28 O TYR A 48 SHEET 3 AA1 3 LEU A 107 VAL A 110 -1 O VAL A 110 N LEU A 27 SHEET 1 AA2 2 ILE A 74 TYR A 76 0 SHEET 2 AA2 2 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SHEET 1 AA3 3 TYR B 48 THR B 49 0 SHEET 2 AA3 3 LEU B 27 PRO B 30 -1 N VAL B 28 O TYR B 48 SHEET 3 AA3 3 LEU B 107 VAL B 109 -1 O VAL B 108 N ARG B 29 SHEET 1 AA4 2 ILE B 74 TYR B 76 0 SHEET 2 AA4 2 SER B 90 SER B 92 -1 O PHE B 91 N VAL B 75 LINK C TRP C 23 N G2Z C 24 1555 1555 1.35 LINK C G2Z C 24 N G2Z C 25 1555 1555 1.34 LINK C G2Z C 25 N URV C 26 1555 1555 1.34 LINK C URV C 26 N NH2 C 27 1555 1555 1.33 LINK C TRP D 23 N G2Z D 24 1555 1555 1.34 LINK C G2Z D 24 N G2Z D 25 1555 1555 1.34 LINK C G2Z D 25 N URV D 26 1555 1555 1.34 LINK C URV D 26 N NH2 D 27 1555 1555 1.33 SITE 1 AC1 7 LEU B 54 GLY B 58 PHE C 19 ALA C 20 SITE 2 AC1 7 GLU C 21 TYR C 22 G2Z C 25 SITE 1 AC2 6 HIS B 96 ALA C 20 GLU C 21 TYR C 22 SITE 2 AC2 6 TRP C 23 HOH C 204 SITE 1 AC4 7 LEU A 54 GLY A 58 PHE D 19 ALA D 20 SITE 2 AC4 7 GLU D 21 TYR D 22 G2Z D 25 SITE 1 AC5 5 HIS A 96 ALA D 20 GLU D 21 TYR D 22 SITE 2 AC5 5 TRP D 23 CRYST1 44.350 49.410 82.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012176 0.00000