HEADER OXIDOREDUCTASE 22-AUG-18 6HG6 TITLE CLOSTRIDIUM BEIJERINCKII ALDO-KETO REDUCTASE CBEI_3974 WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-GLYCERALDEHYDE 3-PHOSPHATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BEIJERINCKII; SOURCE 3 ORGANISM_COMMON: CLOSTRIDIUM MP; SOURCE 4 ORGANISM_TAXID: 1520; SOURCE 5 GENE: GPR_2, CBEIJ_11710; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-14B KEYWDS ALDO KETO REDUCTASE, AKR, CLOSTRIDIUM BEIJERINCKII, CBEI_3974, KEYWDS 2 ALDEHYDE REDUCTASE, METHYLGLYOXAL, TIM BARREL, NADPH, FURFURAL KEYWDS 3 RESISTANCE, 3D STRUCTURE DETERMINATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.F.SCOTT,J.CRESSER-BROWN,P.J.RIZKALLAH,Y.JIN,R.K.ALLEMANN REVDAT 3 17-JAN-24 6HG6 1 REMARK REVDAT 2 31-JUL-19 6HG6 1 JRNL REVDAT 1 29-MAY-19 6HG6 0 JRNL AUTH A.F.SCOTT,J.CRESSER-BROWN,T.L.WILLIAMS,P.J.RIZKALLAH,Y.JIN, JRNL AUTH 2 L.Y.LUK,R.K.ALLEMANN JRNL TITL CRYSTAL STRUCTURE AND BIOPHYSICAL ANALYSIS OF JRNL TITL 2 FURFURAL-DETOXIFYING ALDEHYDE REDUCTASE FROM CLOSTRIDIUM JRNL TITL 3 BEIJERINCKII. JRNL REF APPL.ENVIRON.MICROBIOL. V. 85 2019 JRNL REFN ESSN 1098-5336 JRNL PMID 31101612 JRNL DOI 10.1128/AEM.00978-19 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2667 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2437 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3597 ; 1.983 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5685 ; 1.558 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.818 ;23.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;12.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2994 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 536 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 0.986 ; 1.424 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 0.984 ; 1.422 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1628 ; 1.643 ; 2.120 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1629 ; 1.643 ; 2.123 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1373 ; 1.546 ; 1.738 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1374 ; 1.546 ; 1.740 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1970 ; 2.350 ; 2.509 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3134 ; 6.353 ;18.902 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3071 ; 6.224 ;18.167 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 409 REMARK 3 ORIGIN FOR THE GROUP (A): 83.7297 63.4506 -3.0832 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0874 REMARK 3 T33: 0.1784 T12: -0.0197 REMARK 3 T13: 0.0075 T23: 0.0737 REMARK 3 L TENSOR REMARK 3 L11: 1.3883 L22: 2.0618 REMARK 3 L33: 1.0083 L12: 0.3968 REMARK 3 L13: -0.3777 L23: -0.0889 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.0380 S13: 0.0854 REMARK 3 S21: -0.0857 S22: -0.0223 S23: -0.4553 REMARK 3 S31: -0.0882 S32: 0.2209 S33: 0.0941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 54.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90 MM MOPS PH 7.6, 271 MM NH4CL2, 2.7% REMARK 280 PEG 8K, 10 MM NADPH, 2 MM 4-PYRIDINE METHANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.58250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.58250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.07850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.58250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.58250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.07850 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.58250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.58250 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.07850 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.58250 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.58250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.07850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 239 REMARK 465 ASP A 240 REMARK 465 ASP A 241 REMARK 465 SER A 242 REMARK 465 ARG A 243 REMARK 465 ILE A 244 REMARK 465 LYS A 245 REMARK 465 VAL A 246 REMARK 465 ASP A 247 REMARK 465 GLY A 248 REMARK 465 ARG A 249 REMARK 465 PHE A 250 REMARK 465 LEU A 251 REMARK 465 LYS A 252 REMARK 465 GLN A 253 REMARK 465 ASP A 254 REMARK 465 ILE A 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 110 CA GLY A 111 1.78 REMARK 500 O1 EDO A 406 O HOH A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 111 N GLY A 111 CA 0.117 REMARK 500 GLU A 262 CD GLU A 262 OE1 0.092 REMARK 500 GLU A 262 CD GLU A 262 OE2 0.107 REMARK 500 ASN A 269 CG ASN A 269 OD1 0.212 REMARK 500 ASN A 269 CG ASN A 269 ND2 0.268 REMARK 500 LEU A 272 C LEU A 272 O 0.126 REMARK 500 GLU A 320 C GLU A 320 O 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 68 CA - C - N ANGL. DEV. = -23.3 DEGREES REMARK 500 PRO A 68 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 VAL A 69 C - N - CA ANGL. DEV. = 23.8 DEGREES REMARK 500 PHE A 110 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 PHE A 110 O - C - N ANGL. DEV. = -21.2 DEGREES REMARK 500 GLY A 111 C - N - CA ANGL. DEV. = -24.0 DEGREES REMARK 500 MET A 324 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 16.19 80.42 REMARK 500 VAL A 69 116.37 64.12 REMARK 500 ASP A 84 -39.52 -148.16 REMARK 500 LEU A 230 49.49 -102.07 REMARK 500 LYS A 314 50.70 -141.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 68 VAL A 69 -137.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 68 -13.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 DBREF1 6HG6 A 1 331 UNP A0A1S8QGT2_CLOBE DBREF2 6HG6 A A0A1S8QGT2 1 331 SEQRES 1 A 331 MET LYS TYR GLN ALA SER LYS ASN ARG TYR ASN GLU MET SEQRES 2 A 331 LYS TYR SER LYS CYS GLY GLU SER GLY LEU LYS LEU PRO SEQRES 3 A 331 MET ILE SER PHE GLY LEU TRP HIS ASN PHE GLY SER ASN SEQRES 4 A 331 ALA ASP TYR ASN ASN MET LYS GLU LEU CYS PHE THR ALA SEQRES 5 A 331 PHE ASP ASN GLY ILE THR HIS PHE ASP LEU ALA ASN ASN SEQRES 6 A 331 TYR GLY PRO VAL PRO GLY SER ALA GLU GLU ASN PHE GLY SEQRES 7 A 331 ARG ILE LEU ARG ASP ASP LEU ALA THR TYR ARG ASP GLU SEQRES 8 A 331 LEU LEU ILE SER THR LYS ALA GLY TYR LYS MET TRP GLU SEQRES 9 A 331 GLY PRO TYR GLY ASP PHE GLY SER ARG LYS TYR ILE LEU SEQRES 10 A 331 ALA SER LEU ASP GLN SER LEU LYS ARG MET GLY LEU GLU SEQRES 11 A 331 TYR VAL ASP ILE PHE TYR HIS HIS ARG MET ASP PRO ASP SEQRES 12 A 331 THR PRO LEU GLU GLU SER MET MET ALA LEU ASP THR ALA SEQRES 13 A 331 VAL LYS SER GLY LYS ALA LEU TYR ALA GLY ILE SER ASN SEQRES 14 A 331 TYR ASN GLY GLU THR MET GLU LYS ALA ALA ALA ILE LEU SEQRES 15 A 331 ASN GLU LEU LYS CYS PRO PHE VAL ILE ASN GLN ASN ARG SEQRES 16 A 331 TYR SER ILE PHE ASP ARG THR ILE GLU ASN ASN GLY LEU SEQRES 17 A 331 LYS ARG ALA ALA LYS GLU ASN GLY LYS GLY ILE ILE ALA SEQRES 18 A 331 PHE SER PRO LEU ALA GLN GLY THR LEU THR ASP LYS TYR SEQRES 19 A 331 LEU SER GLY ILE PRO ASP ASP SER ARG ILE LYS VAL ASP SEQRES 20 A 331 GLY ARG PHE LEU LYS GLN ASP ILE LEU THR GLU LYS LYS SEQRES 21 A 331 LEU GLU GLN ILE ARG ARG LEU ASN ASN ILE ALA LEU ASN SEQRES 22 A 331 ARG GLY GLN THR LEU ALA GLN MET ALA LEU SER TRP VAL SEQRES 23 A 331 LEU LYS ASP SER GLU VAL THR SER VAL LEU ILE GLY ALA SEQRES 24 A 331 SER LYS PRO SER GLN ILE ILE GLU ASN VAL GLY ILE VAL SEQRES 25 A 331 HIS LYS ILE GLY PHE THR ASP GLU GLU LEU MET MET ILE SEQRES 26 A 331 ASP GLU ILE SER ALA ASN HET NDP A 401 48 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *264(H2 O) HELIX 1 AA1 ASP A 41 ASN A 55 1 15 HELIX 2 AA2 GLY A 71 ASP A 84 1 14 HELIX 3 AA3 LEU A 85 LEU A 92 5 8 HELIX 4 AA4 SER A 112 GLY A 128 1 17 HELIX 5 AA5 PRO A 145 SER A 159 1 15 HELIX 6 AA6 ASN A 171 LEU A 185 1 15 HELIX 7 AA7 ARG A 201 ASN A 206 1 6 HELIX 8 AA8 GLY A 207 ASN A 215 1 9 HELIX 9 AA9 THR A 257 ARG A 274 1 18 HELIX 10 AB1 THR A 277 LEU A 287 1 11 HELIX 11 AB2 LYS A 301 VAL A 309 1 9 HELIX 12 AB3 GLY A 310 LYS A 314 5 5 HELIX 13 AB4 THR A 318 ALA A 330 1 13 SHEET 1 AA1 2 TYR A 15 LYS A 17 0 SHEET 2 AA1 2 LYS A 24 PRO A 26 -1 O LEU A 25 N SER A 16 SHEET 1 AA2 9 ILE A 28 GLY A 31 0 SHEET 2 AA2 9 HIS A 59 ASP A 61 1 O HIS A 59 N PHE A 30 SHEET 3 AA2 9 LEU A 93 ALA A 98 1 O LEU A 93 N PHE A 60 SHEET 4 AA2 9 VAL A 132 HIS A 137 1 O TYR A 136 N THR A 96 SHEET 5 AA2 9 ALA A 162 SER A 168 1 O TYR A 164 N PHE A 135 SHEET 6 AA2 9 PHE A 189 ARG A 195 1 O GLN A 193 N ILE A 167 SHEET 7 AA2 9 GLY A 218 PHE A 222 1 O GLY A 218 N VAL A 190 SHEET 8 AA2 9 SER A 294 ILE A 297 1 O LEU A 296 N ALA A 221 SHEET 9 AA2 9 ILE A 28 GLY A 31 1 N GLY A 31 O ILE A 297 CISPEP 1 GLY A 67 PRO A 68 0 -1.00 SITE 1 AC1 30 GLY A 31 LEU A 32 TRP A 33 ASN A 35 SITE 2 AC1 30 ASP A 61 TYR A 66 HIS A 138 SER A 168 SITE 3 AC1 30 ASN A 169 GLN A 193 PHE A 222 SER A 223 SITE 4 AC1 30 PRO A 224 LEU A 225 LEU A 296 ILE A 297 SITE 5 AC1 30 GLY A 298 ALA A 299 SER A 300 GLN A 304 SITE 6 AC1 30 GLU A 307 ASN A 308 HOH A 509 HOH A 522 SITE 7 AC1 30 HOH A 566 HOH A 575 HOH A 585 HOH A 624 SITE 8 AC1 30 HOH A 642 HOH A 694 SITE 1 AC2 4 GLY A 105 PRO A 106 HOH A 508 HOH A 661 SITE 1 AC3 3 PRO A 142 HOH A 540 HOH A 596 SITE 1 AC4 8 GLY A 37 SER A 38 ALA A 40 TYR A 42 SITE 2 AC4 8 MET A 45 ASN A 76 ARG A 79 HOH A 677 SITE 1 AC5 10 HIS A 34 ASN A 35 PHE A 36 GLY A 37 SITE 2 AC5 10 ALA A 40 GLY A 67 PRO A 68 HOH A 511 SITE 3 AC5 10 HOH A 591 HOH A 662 SITE 1 AC6 8 ALA A 86 ARG A 89 LEU A 129 GLU A 130 SITE 2 AC6 8 HOH A 501 HOH A 612 HOH A 627 HOH A 667 SITE 1 AC7 6 GLU A 204 ASN A 205 ASN A 206 GLY A 207 SITE 2 AC7 6 ARG A 210 HOH A 676 SITE 1 AC8 4 LYS A 158 SER A 159 HOH A 521 HOH A 555 SITE 1 AC9 7 ASP A 121 TYR A 131 LYS A 161 LEU A 163 SITE 2 AC9 7 HOH A 507 HOH A 565 HOH A 623 CRYST1 109.165 109.165 72.157 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013859 0.00000