HEADER TRANSFERASE 24-AUG-18 6HH1 TITLE STRUCTURE OF C-KIT WITH ALLOSTERIC INHIBITOR 3G8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT,MAST/STEM CELL COMPND 3 GROWTH FACTOR RECEPTOR KIT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 6 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 7 SARCOMA VIRAL ONCOGENE HOMOLOG,SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO- COMPND 8 ONCOGENE C-KIT,TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY- COMPND 9 ZUCKERMAN 4 FELINE SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 10 EC: 2.7.10.1,2.7.10.1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21 KEYWDS C-KIT, KINASE, ALLOSTERIC, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.WRASIDLO,D.A.CHERESH REVDAT 2 15-MAY-24 6HH1 1 REMARK REVDAT 1 18-SEP-19 6HH1 0 JRNL AUTH W.J.WRASIDLO,D.A.CHERESH JRNL TITL STRUCTURE OF C-KIT WITH ALLOSTERIC INHIBITOR 3G8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 17585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.4230 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 3.05000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2518 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2369 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3411 ; 1.896 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5493 ; 1.321 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 6.868 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.871 ;21.597 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;18.937 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;23.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2773 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 565 A 2001 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5998 38.4738 14.7802 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.4004 REMARK 3 T33: 0.0889 T12: 0.0742 REMARK 3 T13: -0.0349 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 2.4784 L22: 3.6107 REMARK 3 L33: 3.2065 L12: 0.1719 REMARK 3 L13: 0.1460 L23: -1.6358 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.0421 S13: -0.1341 REMARK 3 S21: -0.2080 S22: 0.0633 S23: 0.4457 REMARK 3 S31: -0.0059 S32: -0.1656 S33: -0.1778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6HH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.940 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.05 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9.3 MG/ML PROTEIN IN 250 MM NACL, 25 REMARK 280 MM TRIS-HCL PH 7.4, 1 MM EDTA, 0.5 MM TCEP, 1.2 MM 3G8, 0.1% W/W REMARK 280 V8 PROTEASE. 800 NL OF PROTEIN WAS MIXED WITH 800 NL OF REMARK 280 CRYSTALLIZATION SOLUTION (0.1 M TRIS-HCL PH 9.1, 1.5 M REMARK 280 DIAMMONIUM HYDROGEN PHOSPHATE) AND INCUBATED OVER 0.4 ML REMARK 280 CRYSTALLIZATION SOLUTION IN 24 WELL VDX PLATES. CRYSTALS WERE REMARK 280 CRYO-PROTECTED WITH 20% V/V ETHYLENE GLYCOL., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.00267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.00133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.00133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.00267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1141 O HOH A 1200 1.89 REMARK 500 OE2 GLU A 671 O HOH A 1101 1.99 REMARK 500 NH1 ARG A 815 O HOH A 1102 2.13 REMARK 500 O PHE A 782 OG SER A 785 2.19 REMARK 500 NH2 ARG A 815 O HOH A 1102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1154 O HOH A 1163 4655 2.07 REMARK 500 O HOH A 1200 O HOH A 1207 4655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 574 3.78 -60.81 REMARK 500 ARG A 791 -22.19 98.15 REMARK 500 ALA A 794 155.97 178.68 REMARK 500 ASP A 816 84.71 -68.49 REMARK 500 TRP A 907 43.56 -98.38 REMARK 500 ILE A 928 59.98 -100.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4E A 1002 DBREF 6HH1 A 565 764 UNP P10721 KIT_HUMAN 561 698 DBREF 6HH1 A 802 929 UNP P10721 KIT_HUMAN 802 929 SEQADV 6HH1 THR A 694 UNP P10721 GLN 690 CONFLICT SEQADV 6HH1 SER A 753 UNP P10721 GLU 691 CONFLICT SEQADV 6HH1 PRO A 754 UNP P10721 ASP 692 CONFLICT SEQADV 6HH1 ALA A 755 UNP P10721 HIS 693 CONFLICT SEQADV 6HH1 ILE A 756 UNP P10721 ALA 694 CONFLICT SEQADV 6HH1 LEU A 762 UNP P10721 ALA 696 CONFLICT SEQADV 6HH1 ASP A 765 UNP P10721 LINKER SEQADV 6HH1 LEU A 766 UNP P10721 LINKER SEQADV 6HH1 GLU A 767 UNP P10721 LINKER SEQADV 6HH1 ASP A 768 UNP P10721 LINKER SEQADV 6HH1 LEU A 769 UNP P10721 LINKER SEQADV 6HH1 LEU A 770 UNP P10721 LINKER SEQADV 6HH1 SER A 771 UNP P10721 LINKER SEQADV 6HH1 PHE A 772 UNP P10721 LINKER SEQADV 6HH1 SER A 773 UNP P10721 LINKER SEQADV 6HH1 TYR A 774 UNP P10721 LINKER SEQADV 6HH1 GLN A 775 UNP P10721 LINKER SEQADV 6HH1 VAL A 776 UNP P10721 LINKER SEQADV 6HH1 ALA A 777 UNP P10721 LINKER SEQADV 6HH1 LYS A 778 UNP P10721 LINKER SEQADV 6HH1 GLY A 779 UNP P10721 LINKER SEQADV 6HH1 MET A 780 UNP P10721 LINKER SEQADV 6HH1 ALA A 781 UNP P10721 LINKER SEQADV 6HH1 PHE A 782 UNP P10721 LINKER SEQADV 6HH1 LEU A 783 UNP P10721 LINKER SEQADV 6HH1 ALA A 784 UNP P10721 LINKER SEQADV 6HH1 SER A 785 UNP P10721 LINKER SEQADV 6HH1 LYS A 786 UNP P10721 LINKER SEQADV 6HH1 ASN A 787 UNP P10721 LINKER SEQADV 6HH1 CYS A 788 UNP P10721 LINKER SEQADV 6HH1 ILE A 789 UNP P10721 LINKER SEQADV 6HH1 HIS A 790 UNP P10721 LINKER SEQADV 6HH1 ARG A 791 UNP P10721 LINKER SEQADV 6HH1 ASP A 792 UNP P10721 LINKER SEQADV 6HH1 LEU A 793 UNP P10721 LINKER SEQADV 6HH1 ALA A 794 UNP P10721 LINKER SEQADV 6HH1 ALA A 795 UNP P10721 LINKER SEQADV 6HH1 ARG A 796 UNP P10721 LINKER SEQADV 6HH1 ASN A 797 UNP P10721 LINKER SEQADV 6HH1 ILE A 798 UNP P10721 LINKER SEQADV 6HH1 LEU A 799 UNP P10721 LINKER SEQADV 6HH1 LEU A 800 UNP P10721 LINKER SEQADV 6HH1 THR A 801 UNP P10721 LINKER SEQRES 1 A 303 GLY ASN ASN TYR VAL TYR ILE ASP PRO THR GLN LEU PRO SEQRES 2 A 303 TYR ASP HIS LYS TRP GLU PHE PRO ARG ASN ARG LEU SER SEQRES 3 A 303 PHE GLY LYS THR LEU GLY ALA GLY ALA PHE GLY LYS VAL SEQRES 4 A 303 VAL GLU ALA THR ALA TYR GLY LEU ILE LYS SER ASP ALA SEQRES 5 A 303 ALA MET THR VAL ALA VAL LYS MET LEU LYS PRO SER ALA SEQRES 6 A 303 HIS LEU THR GLU ARG GLU ALA LEU MET SER GLU LEU LYS SEQRES 7 A 303 VAL LEU SER TYR LEU GLY ASN HIS MET ASN ILE VAL ASN SEQRES 8 A 303 LEU LEU GLY ALA CYS THR ILE GLY GLY PRO THR LEU VAL SEQRES 9 A 303 ILE THR GLU TYR CYS CYS TYR GLY ASP LEU LEU ASN PHE SEQRES 10 A 303 LEU ARG ARG LYS ARG ASP SER PHE ILE CYS SER LYS THR SEQRES 11 A 303 SER PRO ALA ILE GLU LEU ALA LEU ASP LEU GLU ASP LEU SEQRES 12 A 303 LEU SER PHE SER TYR GLN VAL ALA LYS GLY MET ALA PHE SEQRES 13 A 303 LEU ALA SER LYS ASN CYS ILE HIS ARG ASP LEU ALA ALA SEQRES 14 A 303 ARG ASN ILE LEU LEU THR HIS GLY ARG ILE THR LYS ILE SEQRES 15 A 303 CYS ASP PHE GLY LEU ALA ARG ASP ILE LYS ASN ASP SER SEQRES 16 A 303 ASN TYR VAL VAL LYS GLY ASN ALA ARG LEU PRO VAL LYS SEQRES 17 A 303 TRP MET ALA PRO GLU SER ILE PHE ASN CYS VAL TYR THR SEQRES 18 A 303 PHE GLU SER ASP VAL TRP SER TYR GLY ILE PHE LEU TRP SEQRES 19 A 303 GLU LEU PHE SER LEU GLY SER SER PRO TYR PRO GLY MET SEQRES 20 A 303 PRO VAL ASP SER LYS PHE TYR LYS MET ILE LYS GLU GLY SEQRES 21 A 303 PHE ARG MET LEU SER PRO GLU HIS ALA PRO ALA GLU MET SEQRES 22 A 303 TYR ASP ILE MET LYS THR CYS TRP ASP ALA ASP PRO LEU SEQRES 23 A 303 LYS ARG PRO THR PHE LYS GLN ILE VAL GLN LEU ILE GLU SEQRES 24 A 303 LYS GLN ILE SER HET PO4 A1001 5 HET G4E A1002 27 HETNAM PO4 PHOSPHATE ION HETNAM G4E ~{N}-(2,3-DIMETHYLPHENYL)-5-(4-PYRIDIN-4-YLOXYPHENYL)- HETNAM 2 G4E 4~{H}-1,2,4-TRIAZOL-3-AMINE FORMUL 2 PO4 O4 P 3- FORMUL 3 G4E C21 H19 N5 O FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 PRO A 627 HIS A 630 5 4 HELIX 5 AA5 GLU A 633 LEU A 647 1 15 HELIX 6 AA6 ASP A 677 LYS A 685 1 9 HELIX 7 AA7 LYS A 685 SER A 692 1 8 HELIX 8 AA8 ASP A 765 LYS A 786 1 22 HELIX 9 AA9 ALA A 794 ARG A 796 5 3 HELIX 10 AB1 HIS A 802 ARG A 804 5 3 HELIX 11 AB2 PHE A 811 ARG A 815 5 5 HELIX 12 AB3 PRO A 832 MET A 836 5 5 HELIX 13 AB4 ALA A 837 CYS A 844 1 8 HELIX 14 AB5 THR A 847 SER A 864 1 18 HELIX 15 AB6 ASP A 876 GLY A 886 1 11 HELIX 16 AB7 PRO A 896 TRP A 907 1 12 HELIX 17 AB8 ASP A 910 ARG A 914 5 5 HELIX 18 AB9 THR A 916 ILE A 928 1 13 SHEET 1 AA1 5 LEU A 589 ALA A 597 0 SHEET 2 AA1 5 GLY A 601 TYR A 609 -1 O VAL A 603 N LEU A 595 SHEET 3 AA1 5 ALA A 617 LEU A 625 -1 O VAL A 622 N VAL A 604 SHEET 4 AA1 5 LEU A 667 GLU A 671 -1 O VAL A 668 N LYS A 623 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N GLY A 658 O ILE A 669 SHEET 1 AA2 2 ILE A 798 THR A 801 0 SHEET 2 AA2 2 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA3 2 VAL A 824 LYS A 826 0 SHEET 2 AA3 2 ALA A 829 LEU A 831 -1 O LEU A 831 N VAL A 824 SITE 1 AC1 5 ARG A 634 TYR A 675 GLU A 761 HIS A 802 SITE 2 AC1 5 GLY A 803 SITE 1 AC2 13 LEU A 595 VAL A 603 LYS A 623 LEU A 644 SITE 2 AC2 13 GLU A 671 CYS A 673 LEU A 799 ILE A 808 SITE 3 AC2 13 CYS A 809 ASP A 810 PHE A 811 HOH A1132 SITE 4 AC2 13 HOH A1135 CRYST1 65.614 65.614 159.004 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015241 0.008799 0.000000 0.00000 SCALE2 0.000000 0.017598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006289 0.00000