HEADER BLOOD CLOTTING 27-AUG-18 6HHC TITLE ALLOSTERIC INHIBITION AS A NEW MODE OF ACTION FOR BAY 1213790, A TITLE 2 NEUTRALIZING ANTIBODY TARGETING THE ACTIVATED FORM OF COAGULATION TITLE 3 FACTOR XI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FXIA ANTIBODY FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FXIA ANTIBODY FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: COAGULATION FACTOR XI; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA; COMPND 13 EC: 3.4.21.27; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: F11; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FXIA ANTIBODY FAB, BLOOD CLOTTING, BLOOD CLOTTING-IMMUNE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHAEFER,A.BUCHMUELLER,F.DITTMER,J.STRASSBURGER,A.WILMEN REVDAT 4 17-JAN-24 6HHC 1 REMARK REVDAT 3 25-DEC-19 6HHC 1 JRNL REVDAT 2 06-NOV-19 6HHC 1 JRNL REVDAT 1 11-SEP-19 6HHC 0 JRNL AUTH M.SCHAEFER,A.BUCHMUELLER,F.DITTMER,J.STRASSBURGER,A.WILMEN JRNL TITL ALLOSTERIC INHIBITION AS A NEW MODE OF ACTION FOR BAY JRNL TITL 2 1213790, A NEUTRALIZING ANTIBODY TARGETING THE ACTIVATED JRNL TITL 3 FORM OF COAGULATION FACTOR XI. JRNL REF J.MOL.BIOL. V. 431 4817 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31655039 JRNL DOI 10.1016/J.JMB.2019.09.008 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -2.68000 REMARK 3 B33 (A**2) : 3.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.337 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.815 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5181 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4622 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7038 ; 2.171 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10781 ; 1.153 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 651 ; 9.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;37.599 ;24.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 840 ;20.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 779 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5740 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1034 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 3 L 215 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6857 -31.8893 37.1000 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.2367 REMARK 3 T33: 0.2000 T12: 0.0014 REMARK 3 T13: 0.0338 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.7698 L22: 1.5966 REMARK 3 L33: 0.5738 L12: -0.3512 REMARK 3 L13: -0.0803 L23: -0.8119 REMARK 3 S TENSOR REMARK 3 S11: -0.2058 S12: -0.0114 S13: -0.2302 REMARK 3 S21: -0.2160 S22: 0.1007 S23: 0.0712 REMARK 3 S31: 0.1222 S32: -0.0871 S33: 0.1051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0881 -17.2624 48.1852 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.3558 REMARK 3 T33: 0.1726 T12: 0.0503 REMARK 3 T13: 0.0200 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.3932 L22: 1.6023 REMARK 3 L33: 0.1203 L12: -0.1730 REMARK 3 L13: -0.1860 L23: -0.1110 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: -0.1095 S13: -0.0075 REMARK 3 S21: 0.1041 S22: 0.1419 S23: -0.0156 REMARK 3 S31: 0.0275 S32: 0.0557 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 388 A 623 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4775 15.1261 11.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.6733 T22: 0.2667 REMARK 3 T33: 0.0307 T12: -0.0126 REMARK 3 T13: -0.0444 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 0.4946 L22: 5.4771 REMARK 3 L33: 1.9472 L12: -0.0541 REMARK 3 L13: 0.4516 L23: -2.9336 REMARK 3 S TENSOR REMARK 3 S11: -0.1686 S12: -0.3222 S13: 0.1224 REMARK 3 S21: -1.3702 S22: 0.0404 S23: -0.0386 REMARK 3 S31: 0.5157 S32: -0.2678 S33: 0.1282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6HHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91832 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, BALBES REMARK 200 STARTING MODEL: 3GJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS-HCL PH 7.5,75 MM NACL, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.97050 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.94650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.97050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.94650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA L 1 REMARK 465 GLN L 2 REMARK 465 CYS L 216 REMARK 465 SER H 134 REMARK 465 SER H 135 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 SER H 222 REMARK 465 CYS H 223 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 THR H 226 REMARK 465 HIS H 227 REMARK 465 LYS A 504 REMARK 465 GLY A 505 REMARK 465 ASP A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 VAL A 509 REMARK 465 ILE A 510 REMARK 465 ALA A 624 REMARK 465 VAL A 625 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 543 OE1 GLU A 543 2455 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 3 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP L 3 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP L 30 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU L 203 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG H 19 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 LYS H 43 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP H 73 CB - CG - OD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 PRO H 133 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 564 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 28 -9.45 -59.15 REMARK 500 SER L 32 -117.73 47.68 REMARK 500 ALA L 53 -44.11 80.82 REMARK 500 SER L 54 -7.96 -140.91 REMARK 500 ALA L 86 163.31 165.98 REMARK 500 VAL L 112 131.12 -34.07 REMARK 500 ALA L 146 117.01 -162.85 REMARK 500 ASN L 154 73.50 37.78 REMARK 500 SER L 173 17.08 57.39 REMARK 500 LYS L 192 -56.92 -121.42 REMARK 500 GLN L 201 2.08 -68.65 REMARK 500 PHE H 29 -44.90 -26.70 REMARK 500 LYS H 43 -152.99 149.97 REMARK 500 SER H 57 95.90 49.75 REMARK 500 ALA H 92 158.89 176.28 REMARK 500 ASP H 151 62.39 71.85 REMARK 500 ALA H 165 4.25 -63.62 REMARK 500 THR H 167 -52.32 -130.51 REMARK 500 PRO H 209 -9.38 -58.14 REMARK 500 TRP A 399 60.70 -110.75 REMARK 500 ASN A 423 -50.03 -20.53 REMARK 500 TYR A 434 104.82 -46.71 REMARK 500 LEU A 449 -68.60 -122.38 REMARK 500 GLU A 456 -53.80 -6.48 REMARK 500 TYR A 479 17.37 59.00 REMARK 500 THR A 493 -144.32 -137.08 REMARK 500 GLN A 496 64.29 -158.87 REMARK 500 PRO A 502 -134.32 -87.37 REMARK 500 TRP A 519 -68.80 -94.83 REMARK 500 LYS A 523 109.62 -35.71 REMARK 500 LEU A 524 113.87 118.42 REMARK 500 ARG A 525 35.26 39.72 REMARK 500 ASP A 526 54.61 39.18 REMARK 500 LEU A 532 120.51 -36.68 REMARK 500 ALA A 561 86.70 -179.61 REMARK 500 CYS A 571 -169.29 -127.16 REMARK 500 SER A 594 -72.51 -122.75 REMARK 500 GLU A 620 -6.24 -55.60 REMARK 500 THR A 622 13.71 -66.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY H 42 LYS H 43 50.03 REMARK 500 ARG H 72 ASP H 73 149.28 REMARK 500 ARG A 522 LYS A 523 147.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS H 304 DBREF 6HHC L 1 216 PDB 6HHC 6HHC 1 216 DBREF 6HHC H 1 227 PDB 6HHC 6HHC 1 227 DBREF 6HHC A 388 625 UNP P03951 FA11_HUMAN 388 625 SEQADV 6HHC SER A 500 UNP P03951 CYS 500 ENGINEERED MUTATION SEQRES 1 L 216 ALA GLN ASP ILE GLN MET THR GLN SER PRO SER SER LEU SEQRES 2 L 216 SER ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN SEQRES 3 L 216 ALA SER GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN SEQRES 4 L 216 GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP SEQRES 5 L 216 ALA SER ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER SEQRES 6 L 216 GLY SER GLY SER GLY THR ASP PHE THR PHE THR ILE SER SEQRES 7 L 216 SER LEU GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN SEQRES 8 L 216 GLN ALA ASN SER PHE PRO VAL THR PHE GLY GLY GLY THR SEQRES 9 L 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR SER SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 227 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 227 PHE THR PHE SER GLN TYR GLY MET ASP TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE GLY SEQRES 5 H 227 PRO SER GLY GLY SER THR VAL TYR ALA ASP SER VAL LYS SEQRES 6 H 227 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 227 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS THR ARG GLY GLY PRO TYR TYR TYR SEQRES 9 H 227 TYR GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR SEQRES 10 H 227 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 227 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 227 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 227 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 227 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 227 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 227 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 227 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 227 SER CYS ASP LYS THR HIS SEQRES 1 A 238 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 A 238 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 A 238 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 A 238 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 A 238 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU ASN GLN SER SEQRES 6 A 238 GLU ILE LYS GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 A 238 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 A 238 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL ASN SEQRES 9 A 238 TYR THR ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 A 238 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 A 238 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 A 238 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 A 238 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 A 238 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 A 238 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 A 238 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 A 238 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 A 238 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 A 238 THR GLN ALA VAL HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET DMS H 304 4 HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 DMS C2 H6 O S HELIX 1 AA1 GLN L 81 ILE L 85 5 5 HELIX 2 AA2 SER L 123 LYS L 128 1 6 HELIX 3 AA3 LYS L 185 LYS L 190 1 6 HELIX 4 AA4 THR H 28 TYR H 32 5 5 HELIX 5 AA5 ARG H 87 THR H 91 5 5 HELIX 6 AA6 SER H 163 ALA H 165 5 3 HELIX 7 AA7 SER H 194 GLN H 199 1 6 HELIX 8 AA8 LYS H 208 ASN H 211 5 4 HELIX 9 AA9 ALA A 430 TYR A 434 5 5 HELIX 10 AB1 SER A 438 LYS A 440 5 3 HELIX 11 AB2 ASN A 450 ILE A 454 5 5 HELIX 12 AB3 MET A 474 GLY A 478 5 5 HELIX 13 AB4 THR A 541 ARG A 548 1 8 HELIX 14 AB5 TYR A 614 GLU A 620 1 7 SHEET 1 AA1 4 MET L 6 SER L 9 0 SHEET 2 AA1 4 VAL L 21 ALA L 27 -1 O THR L 24 N SER L 9 SHEET 3 AA1 4 ASP L 72 ILE L 77 -1 O PHE L 75 N ILE L 23 SHEET 4 AA1 4 PHE L 64 SER L 67 -1 N SER L 67 O THR L 74 SHEET 1 AA2 6 SER L 12 SER L 16 0 SHEET 2 AA2 6 THR L 104 LYS L 109 1 O GLU L 107 N LEU L 13 SHEET 3 AA2 6 ALA L 86 GLN L 92 -1 N TYR L 88 O THR L 104 SHEET 4 AA2 6 LEU L 35 GLN L 40 -1 N ASN L 36 O GLN L 91 SHEET 5 AA2 6 LYS L 47 TYR L 51 -1 O ILE L 50 N TRP L 37 SHEET 6 AA2 6 ASN L 55 LEU L 56 -1 O ASN L 55 N TYR L 51 SHEET 1 AA3 4 SER L 12 SER L 16 0 SHEET 2 AA3 4 THR L 104 LYS L 109 1 O GLU L 107 N LEU L 13 SHEET 3 AA3 4 ALA L 86 GLN L 92 -1 N TYR L 88 O THR L 104 SHEET 4 AA3 4 THR L 99 PHE L 100 -1 O THR L 99 N GLN L 92 SHEET 1 AA4 4 SER L 116 PHE L 120 0 SHEET 2 AA4 4 THR L 131 PHE L 141 -1 O LEU L 137 N PHE L 118 SHEET 3 AA4 4 TYR L 175 SER L 184 -1 O LEU L 183 N ALA L 132 SHEET 4 AA4 4 SER L 161 VAL L 165 -1 N GLN L 162 O THR L 180 SHEET 1 AA5 3 LYS L 147 VAL L 152 0 SHEET 2 AA5 3 VAL L 193 THR L 199 -1 O GLU L 197 N GLN L 149 SHEET 3 AA5 3 VAL L 207 ASN L 212 -1 O LYS L 209 N CYS L 196 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O ALA H 23 N LEU H 5 SHEET 3 AA6 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA6 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA7 6 GLY H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 AA7 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 114 SHEET 4 AA7 6 MET H 34 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O VAL H 59 N GLY H 50 SHEET 1 AA8 4 SER H 127 LEU H 131 0 SHEET 2 AA8 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AA8 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AA8 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AA9 4 SER H 127 LEU H 131 0 SHEET 2 AA9 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AA9 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AA9 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB1 3 THR H 158 TRP H 161 0 SHEET 2 AB1 3 TYR H 201 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AB1 3 THR H 212 VAL H 218 -1 O VAL H 214 N VAL H 205 SHEET 1 AB2 7 THR A 392 ALA A 393 0 SHEET 2 AB2 7 GLN A 533 LYS A 536 -1 O LYS A 534 N THR A 392 SHEET 3 AB2 7 CYS A 514 GLY A 518 -1 N VAL A 516 O ALA A 535 SHEET 4 AB2 7 PRO A 578 LYS A 582 -1 O SER A 580 N TRP A 515 SHEET 5 AB2 7 TRP A 587 TRP A 595 -1 O HIS A 588 N CYS A 581 SHEET 6 AB2 7 VAL A 607 ASN A 610 -1 O VAL A 607 N TRP A 595 SHEET 7 AB2 7 MET A 558 CYS A 560 -1 N ILE A 559 O TYR A 608 SHEET 1 AB3 6 LEU A 442 SER A 446 0 SHEET 2 AB3 6 GLN A 402 THR A 407 -1 N HIS A 406 O ARG A 443 SHEET 3 AB3 6 ARG A 413 GLY A 422 -1 O LEU A 415 N LEU A 405 SHEET 4 AB3 6 TRP A 425 THR A 428 -1 O TRP A 425 N ILE A 421 SHEET 5 AB3 6 ALA A 482 LEU A 486 -1 O ALA A 482 N THR A 428 SHEET 6 AB3 6 VAL A 463 ILE A 468 -1 N ILE A 467 O LEU A 483 SHEET 1 AB4 2 TYR A 521 ARG A 522 0 SHEET 2 AB4 2 LYS A 527 ILE A 528 -1 O LYS A 527 N ARG A 522 SSBOND 1 CYS L 25 CYS L 90 1555 1555 2.18 SSBOND 2 CYS L 136 CYS L 196 1555 1555 2.01 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.09 SSBOND 4 CYS H 147 CYS H 203 1555 1555 2.02 SSBOND 5 CYS A 416 CYS A 432 1555 1555 2.08 SSBOND 6 CYS A 514 CYS A 581 1555 1555 2.02 SSBOND 7 CYS A 545 CYS A 560 1555 1555 2.01 SSBOND 8 CYS A 571 CYS A 599 1555 1555 2.05 CISPEP 1 SER L 9 PRO L 10 0 0.06 CISPEP 2 PHE L 96 PRO L 97 0 -2.41 CISPEP 3 TYR L 142 SER L 143 0 -10.44 CISPEP 4 PHE H 153 PRO H 154 0 -10.87 CISPEP 5 GLU H 155 PRO H 156 0 1.05 CISPEP 6 SER A 409 PRO A 410 0 -2.94 SITE 1 AC1 8 GLY H 52 PRO H 53 SER H 54 GLY H 55 SITE 2 AC1 8 GLY H 56 SER H 57 SER L 204 SER L 205 SITE 1 AC2 4 THR A 411 PHE H 27 THR H 28 TYR H 32 SITE 1 AC3 3 THR H 114 THR H 115 LYS H 208 SITE 1 AC4 1 GLY H 125 CRYST1 61.941 70.679 185.893 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005379 0.00000