HEADER PROTEIN BINDING 28-AUG-18 6HHD TITLE MOUSE PRION PROTEIN IN COMPLEX WITH NANOBODY 484 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP,PRP27-30,PRP33-35C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NANOBODY 484; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: MAJOR PRION PROTEIN; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: PRP,PRP27-30,PRP33-35C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: NANOBODY 484; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRNP, PRN-P, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 10 ORGANISM_COMMON: ARABIAN CAMEL; SOURCE 11 ORGANISM_TAXID: 9838; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 GENE: PRNP, PRN-P, PRP; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 23 ORGANISM_COMMON: ARABIAN CAMEL; SOURCE 24 ORGANISM_TAXID: 9838; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRION, NANOBODY, AGGREGATION, B-SHEET, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.SOROR,R.ABSKHARON,A.WOHLKONIG REVDAT 3 17-JAN-24 6HHD 1 LINK REVDAT 2 18-DEC-19 6HHD 1 JRNL REVDAT 1 11-DEC-19 6HHD 0 JRNL AUTH R.ABSKHARON,F.WANG,A.WOHLKONIG,J.RUAN,S.SOROR,G.GIACHIN, JRNL AUTH 2 E.PARDON,W.ZOU,G.LEGNAME,J.MA,J.STEYAERT JRNL TITL STRUCTURAL EVIDENCE FOR THE CRITICAL ROLE OF THE PRION JRNL TITL 2 PROTEIN HYDROPHOBIC REGION IN FORMING AN INFECTIOUS PRION. JRNL REF PLOS PATHOG. V. 15 08139 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 31815959 JRNL DOI 10.1371/JOURNAL.PPAT.1008139 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.8683 - 4.6750 1.00 2644 140 0.1889 0.2203 REMARK 3 2 4.6750 - 3.7109 0.99 2554 135 0.1541 0.1990 REMARK 3 3 3.7109 - 3.2418 1.00 2589 136 0.1830 0.2335 REMARK 3 4 3.2418 - 2.9454 1.00 2558 135 0.1945 0.2355 REMARK 3 5 2.9454 - 2.7343 1.00 2573 135 0.2145 0.2367 REMARK 3 6 2.7343 - 2.5731 1.00 2531 133 0.2188 0.2733 REMARK 3 7 2.5731 - 2.4443 1.00 2576 136 0.2369 0.2522 REMARK 3 8 2.4443 - 2.3379 1.00 2553 134 0.2510 0.2821 REMARK 3 9 2.3379 - 2.2478 0.99 2530 134 0.2674 0.2853 REMARK 3 10 2.2478 - 2.1703 1.00 2547 134 0.2885 0.3498 REMARK 3 11 2.1703 - 2.1024 0.97 2458 129 0.3099 0.3529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3805 REMARK 3 ANGLE : 0.550 5144 REMARK 3 CHIRALITY : 0.040 522 REMARK 3 PLANARITY : 0.003 676 REMARK 3 DIHEDRAL : 15.655 2238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.8402 -24.4808 -15.3606 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.2161 REMARK 3 T33: 0.1829 T12: 0.0177 REMARK 3 T13: -0.0003 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: -0.1096 L22: 1.1431 REMARK 3 L33: 0.0798 L12: -0.0491 REMARK 3 L13: 0.0015 L23: 0.0244 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.0003 S13: -0.0026 REMARK 3 S21: -0.0157 S22: -0.0413 S23: 0.0465 REMARK 3 S31: -0.0033 S32: -0.0001 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M AMMONIUM SULFATE, 0.1 M MES REMARK 280 PH6.0, 15% W/V PEG 40000., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.89900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 SER B 124 O REMARK 470 SER D 124 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG B 45 O HOH B 301 1.13 REMARK 500 HE ARG A 156 OE2 GLU A 196 1.55 REMARK 500 HH TYR C 128 O HOH C 403 1.58 REMARK 500 O HOH B 370 O HOH B 392 1.81 REMARK 500 O1 SO4 B 201 O HOH B 301 1.83 REMARK 500 O HOH D 329 O HOH D 389 1.89 REMARK 500 O HOH C 406 O HOH C 433 1.91 REMARK 500 OH TYR A 218 O HOH A 401 1.98 REMARK 500 NH2 ARG B 45 O HOH B 301 1.99 REMARK 500 O2 SO4 B 201 O HOH B 301 1.99 REMARK 500 OE1 GLN C 212 O HOH C 401 1.99 REMARK 500 O GLY B 15 O HOH B 302 2.01 REMARK 500 OE1 GLU A 200 O HOH A 402 2.01 REMARK 500 O HOH A 411 O HOH A 456 2.03 REMARK 500 O HOH D 358 O HOH D 380 2.03 REMARK 500 OE2 GLU A 200 O HOH A 402 2.03 REMARK 500 O HOH B 342 O HOH B 389 2.03 REMARK 500 O HOH A 416 O HOH A 463 2.04 REMARK 500 O HOH B 336 O HOH B 386 2.06 REMARK 500 O HOH A 431 O HOH D 360 2.08 REMARK 500 NZ LYS D 65 O HOH D 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH21 ARG D 45 O HOH B 301 1545 1.37 REMARK 500 H HIS B 113 O2 SO4 D 202 1565 1.58 REMARK 500 O HOH B 367 O HOH C 435 2455 1.84 REMARK 500 NH2 ARG D 45 O HOH B 301 1545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 192 1.13 -62.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 382 O REMARK 620 2 HOH D 310 O 96.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 203 DBREF 6HHD A 119 226 UNP P04925 PRIO_MOUSE 118 225 DBREF 6HHD B 1 124 PDB 6HHD 6HHD 1 124 DBREF 6HHD C 119 225 UNP P04925 PRIO_MOUSE 118 224 DBREF 6HHD D 1 125 PDB 6HHD 6HHD 1 125 SEQRES 1 A 108 GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 2 A 108 SER ALA MET SER ARG PRO MET ILE HIS PHE GLY ASN ASP SEQRES 3 A 108 TRP GLU ASP ARG TYR TYR ARG GLU ASN MET TYR ARG TYR SEQRES 4 A 108 PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR SER SEQRES 5 A 108 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 6 A 108 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 7 A 108 ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG VAL SEQRES 8 A 108 VAL GLU GLN MET CYS VAL THR GLN TYR GLN LYS GLU SER SEQRES 9 A 108 GLN ALA TYR TYR SEQRES 1 B 124 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 124 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 124 ARG THR PHE SER SER TYR ASN MET GLY TRP PHE ARG GLN SEQRES 4 B 124 ALA PRO GLY LYS GLY ARG GLU PHE VAL ALA SER ILE THR SEQRES 5 B 124 SER SER GLY ASP LYS SER ASP TYR THR ASP SER VAL LYS SEQRES 6 B 124 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 124 MET TYR LEU GLN MET ASN ASN LEU LYS PRO GLU ASP THR SEQRES 8 B 124 ALA THR TYR TYR CYS ALA ARG GLY LEU GLY ILE TYR ILE SEQRES 9 B 124 ILE ARG ALA ARG GLY GLY TYR ASP HIS TRP GLY GLN GLY SEQRES 10 B 124 THR GLN VAL THR VAL SER SER SEQRES 1 C 107 GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 2 C 107 SER ALA MET SER ARG PRO MET ILE HIS PHE GLY ASN ASP SEQRES 3 C 107 TRP GLU ASP ARG TYR TYR ARG GLU ASN MET TYR ARG TYR SEQRES 4 C 107 PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR SER SEQRES 5 C 107 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 6 C 107 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 7 C 107 ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG VAL SEQRES 8 C 107 VAL GLU GLN MET CYS VAL THR GLN TYR GLN LYS GLU SER SEQRES 9 C 107 GLN ALA TYR SEQRES 1 D 125 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 125 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 125 ARG THR PHE SER SER TYR ASN MET GLY TRP PHE ARG GLN SEQRES 4 D 125 ALA PRO GLY LYS GLY ARG GLU PHE VAL ALA SER ILE THR SEQRES 5 D 125 SER SER GLY ASP LYS SER ASP TYR THR ASP SER VAL LYS SEQRES 6 D 125 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 125 MET TYR LEU GLN MET ASN ASN LEU LYS PRO GLU ASP THR SEQRES 8 D 125 ALA THR TYR TYR CYS ALA ARG GLY LEU GLY ILE TYR ILE SEQRES 9 D 125 ILE ARG ALA ARG GLY GLY TYR ASP HIS TRP GLY GLN GLY SEQRES 10 D 125 THR GLN VAL THR VAL SER SER HIS HET CL A 301 1 HET SO4 B 201 5 HET CL B 202 1 HET GOL C 301 14 HET SO4 C 302 5 HET NA C 303 1 HET SO4 D 201 5 HET SO4 D 202 5 HET CL D 203 1 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL 3(CL 1-) FORMUL 6 SO4 4(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 10 NA NA 1+ FORMUL 14 HOH *285(H2 O) HELIX 1 AA1 ASN A 143 MET A 154 1 12 HELIX 2 AA2 TYR A 155 TYR A 157 5 3 HELIX 3 AA3 PRO A 165 TYR A 169 5 5 HELIX 4 AA4 ASN A 171 LYS A 194 1 24 HELIX 5 AA5 THR A 199 GLN A 223 1 25 HELIX 6 AA6 THR B 28 TYR B 32 5 5 HELIX 7 AA7 LYS B 87 THR B 91 5 5 HELIX 8 AA8 ALA B 107 GLY B 109 5 3 HELIX 9 AA9 ASN C 143 MET C 154 1 12 HELIX 10 AB1 TYR C 155 TYR C 157 5 3 HELIX 11 AB2 PRO C 165 TYR C 169 5 5 HELIX 12 AB3 ASN C 171 THR C 192 1 22 HELIX 13 AB4 THR C 199 GLN C 223 1 25 HELIX 14 AB5 THR D 28 TYR D 32 5 5 HELIX 15 AB6 LYS D 87 THR D 91 5 5 HELIX 16 AB7 ALA D 107 GLY D 109 5 3 SHEET 1 AA1 3 ALA A 120 VAL A 122 0 SHEET 2 AA1 3 LEU A 125 LEU A 130 -1 O TYR A 128 N ALA A 120 SHEET 3 AA1 3 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SHEET 1 AA2 4 LEU B 4 SER B 7 0 SHEET 2 AA2 4 LEU B 18 ALA B 24 -1 O SER B 21 N SER B 7 SHEET 3 AA2 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA2 4 PHE B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 AA3 6 GLY B 10 VAL B 12 0 SHEET 2 AA3 6 THR B 118 VAL B 122 1 O THR B 121 N GLY B 10 SHEET 3 AA3 6 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 118 SHEET 4 AA3 6 MET B 34 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA3 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 AA3 6 SER B 58 TYR B 60 -1 O ASP B 59 N SER B 50 SHEET 1 AA4 4 GLY B 10 VAL B 12 0 SHEET 2 AA4 4 THR B 118 VAL B 122 1 O THR B 121 N GLY B 10 SHEET 3 AA4 4 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 118 SHEET 4 AA4 4 TYR B 111 ASP B 112 -1 O ASP B 112 N ARG B 98 SHEET 1 AA5 3 ALA C 120 VAL C 122 0 SHEET 2 AA5 3 LEU C 125 LEU C 130 -1 O LEU C 125 N VAL C 122 SHEET 3 AA5 3 TYR C 162 TYR C 163 -1 O TYR C 163 N MET C 129 SHEET 1 AA6 4 LEU D 4 SER D 7 0 SHEET 2 AA6 4 LEU D 18 ALA D 24 -1 O ALA D 23 N GLN D 5 SHEET 3 AA6 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA6 4 PHE D 68 ASP D 73 -1 N THR D 69 O GLN D 82 SHEET 1 AA7 6 GLY D 10 VAL D 12 0 SHEET 2 AA7 6 THR D 118 VAL D 122 1 O THR D 121 N GLY D 10 SHEET 3 AA7 6 ALA D 92 GLY D 99 -1 N TYR D 94 O THR D 118 SHEET 4 AA7 6 MET D 34 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 5 AA7 6 GLU D 46 ILE D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 AA7 6 SER D 58 TYR D 60 -1 O ASP D 59 N SER D 50 SHEET 1 AA8 4 GLY D 10 VAL D 12 0 SHEET 2 AA8 4 THR D 118 VAL D 122 1 O THR D 121 N GLY D 10 SHEET 3 AA8 4 ALA D 92 GLY D 99 -1 N TYR D 94 O THR D 118 SHEET 4 AA8 4 TYR D 111 ASP D 112 -1 O ASP D 112 N ARG D 98 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.05 SSBOND 3 CYS C 179 CYS C 214 1555 1555 2.03 SSBOND 4 CYS D 22 CYS D 96 1555 1555 2.05 LINK O HOH B 382 NA NA C 303 1545 1555 3.05 LINK NA NA C 303 O HOH D 310 1555 1555 2.48 SITE 1 AC1 10 GLN B 39 GLY B 44 ARG B 45 ARG B 108 SITE 2 AC1 10 HOH B 301 HOH B 333 GLY D 44 ARG D 45 SITE 3 AC1 10 ARG D 108 HOH D 340 SITE 1 AC2 4 GLN B 116 HOH B 306 HOH B 382 NA C 303 SITE 1 AC3 3 SER C 222 TYR C 225 HOH C 418 SITE 1 AC4 5 HIS A 140 MET C 138 HIS C 140 ARG C 151 SITE 2 AC4 5 HOH C 415 SITE 1 AC5 6 CL B 202 HOH B 382 ARG C 164 GLN C 168 SITE 2 AC5 6 GLY D 109 HOH D 310 SITE 1 AC6 5 GLN D 1 VAL D 2 ARG D 98 HIS D 113 SITE 2 AC6 5 HOH D 302 SITE 1 AC7 6 ASP B 112 HIS B 113 HOH B 305 CL D 203 SITE 2 AC7 6 HOH D 328 HOH D 342 SITE 1 AC8 2 HIS D 113 SO4 D 202 CRYST1 59.130 63.798 69.792 90.00 101.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016912 0.000000 0.003582 0.00000 SCALE2 0.000000 0.015674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014646 0.00000