HEADER OXIDOREDUCTASE 31-AUG-18 6HIU TITLE CYTOCHROME P460 FROM METHYLOCOCCUS CAPSULATUS (BATH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P460; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS (STRAIN ATCC 33009 / SOURCE 3 NCIMB 11132 / BATH); SOURCE 4 ORGANISM_TAXID: 243233; SOURCE 5 STRAIN: ATCC 33009 / NCIMB 11132 / BATH; SOURCE 6 GENE: MCA0524; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYTOCHROME, NO, CO, METHANOTROPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ADAMS,T.M.CHICANO,M.A.HOUGH REVDAT 2 01-MAY-19 6HIU 1 JRNL REVDAT 1 20-MAR-19 6HIU 0 JRNL AUTH H.R.ADAMS,C.KREWSON,J.E.VARDANEGA,S.FUJII,T.MORENO, JRNL AUTH 2 Y.SAMBONGI,D.SVISTUNENKO,J.PAPS,C.R.ANDREW,M.A.HOUGH JRNL TITL ONE FOLD, TWO FUNCTIONS: CYTOCHROME P460 AND JRNL TITL 2 CYTOCHROMEC'-BETA FROM THE METHANOTROPHMETHYLOCOCCUS JRNL TITL 3 CAPSULATUS(BATH). JRNL REF CHEM SCI V. 10 3031 2019 JRNL REFN ISSN 2041-6520 JRNL PMID 30996884 JRNL DOI 10.1039/C8SC05210G REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 68885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2456 ; 0.021 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2135 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3372 ; 1.840 ; 1.724 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4993 ; 1.557 ; 1.680 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ;17.623 ; 5.309 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;28.652 ;22.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;13.404 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3199 ; 0.024 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 501 ; 0.066 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 1.699 ; 1.848 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1186 ; 1.677 ; 1.847 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1494 ; 2.401 ; 2.767 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6HIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 46.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MICROLITRES OF 15MG/ML PROTEIN IN REMARK 280 20MM TRIS BUFFER, PH8, WITH AN EQUIVALENT VOLUME OF RESERVOIR REMARK 280 SOLUTION CONTAINING 0.1M TRIS, 2.4M AMMONIUM SULFATE PH8, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.31150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.63200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.82350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.63200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.31150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.82350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 PHE B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 VAL B 15 REMARK 465 LEU B 16 REMARK 465 ALA B 17 REMARK 465 GLU B 18 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 PHE A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 LYS B 128 CD CE NZ REMARK 470 LYS B 148 CE NZ REMARK 470 LYS A 82 CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 110 NZ REMARK 470 LYS A 128 CD CE NZ REMARK 470 LYS A 148 NZ REMARK 470 LYS A 159 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 78 C4D HEC B 201 2.09 REMARK 500 CD LYS A 78 C2A HEC A 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 313 O HOH A 375 4555 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 89 77.53 -157.70 REMARK 500 PHE A 89 77.24 -155.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 144 NE2 REMARK 620 2 HEC B 201 NA 90.6 REMARK 620 3 HEC B 201 NB 91.6 90.8 REMARK 620 4 HEC B 201 NC 93.3 176.1 89.7 REMARK 620 5 HEC B 201 ND 95.3 88.6 173.1 90.4 REMARK 620 6 HOH B 318 O 176.0 85.9 86.8 90.2 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HEC A 201 NA 91.7 REMARK 620 3 HEC A 201 NB 92.1 90.2 REMARK 620 4 HEC A 201 NC 93.7 174.5 88.8 REMARK 620 5 HEC A 201 ND 94.9 88.2 172.8 92.1 REMARK 620 6 HOH A 377 O 176.2 85.9 85.0 88.7 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC A 201 and LYS A REMARK 800 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC A 201 and CYS A REMARK 800 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC A 201 and CYS A REMARK 800 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC A 201 and LYS A REMARK 800 78 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HIH RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM SAME ORGANISM: PUBLISHED IN SAME CITATION DBREF 6HIU B 1 161 UNP G1UBD9 G1UBD9_METCA 1 161 DBREF 6HIU A 1 161 UNP G1UBD9 G1UBD9_METCA 1 161 SEQRES 1 B 161 MET ARG LYS LEU ALA ILE ALA LEU LEU PHE PRO ALA ALA SEQRES 2 B 161 ALA VAL LEU ALA GLU PRO ALA ALA ALA PRO ASN GLY ILE SEQRES 3 B 161 SER LEU PRO ALA GLY TYR LYS ASP TRP LYS MET ILE GLY SEQRES 4 B 161 VAL SER SER ARG ILE GLU GLN ASN ASN LEU ARG ALA ILE SEQRES 5 B 161 LEU GLY ASN ASP ILE ALA VAL LYS ALA ALA ARG GLU GLY SEQRES 6 B 161 ARG THR HIS PRO TRP PRO ASP GLY ALA ILE LEU VAL LYS SEQRES 7 B 161 LEU SER TRP LYS LYS SER THR HIS GLU LEU PHE PRO SER SEQRES 8 B 161 ALA GLU VAL PRO GLY ASP PHE THR GLN ALA ASP PHE MET SEQRES 9 B 161 VAL LYS ASP ALA ALA LYS TYR ALA SER THR GLY GLY TRP SEQRES 10 B 161 GLY TYR ALA ARG TRP LEU GLY MET GLU GLN LYS PRO TYR SEQRES 11 B 161 GLY ALA ASN ALA ASP PHE ALA GLN GLU CYS MET GLY CYS SEQRES 12 B 161 HIS SER GLY ALA LYS ALA ALA ASP TYR VAL PHE THR HIS SEQRES 13 B 161 PRO ALA LYS LEU PRO SEQRES 1 A 161 MET ARG LYS LEU ALA ILE ALA LEU LEU PHE PRO ALA ALA SEQRES 2 A 161 ALA VAL LEU ALA GLU PRO ALA ALA ALA PRO ASN GLY ILE SEQRES 3 A 161 SER LEU PRO ALA GLY TYR LYS ASP TRP LYS MET ILE GLY SEQRES 4 A 161 VAL SER SER ARG ILE GLU GLN ASN ASN LEU ARG ALA ILE SEQRES 5 A 161 LEU GLY ASN ASP ILE ALA VAL LYS ALA ALA ARG GLU GLY SEQRES 6 A 161 ARG THR HIS PRO TRP PRO ASP GLY ALA ILE LEU VAL LYS SEQRES 7 A 161 LEU SER TRP LYS LYS SER THR HIS GLU LEU PHE PRO SER SEQRES 8 A 161 ALA GLU VAL PRO GLY ASP PHE THR GLN ALA ASP PHE MET SEQRES 9 A 161 VAL LYS ASP ALA ALA LYS TYR ALA SER THR GLY GLY TRP SEQRES 10 A 161 GLY TYR ALA ARG TRP LEU GLY MET GLU GLN LYS PRO TYR SEQRES 11 A 161 GLY ALA ASN ALA ASP PHE ALA GLN GLU CYS MET GLY CYS SEQRES 12 A 161 HIS SER GLY ALA LYS ALA ALA ASP TYR VAL PHE THR HIS SEQRES 13 A 161 PRO ALA LYS LEU PRO HET HEC B 201 43 HET GOL B 202 6 HET HEC A 201 43 HET SO4 A 202 5 HETNAM HEC HEME C HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 GOL C3 H8 O3 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *248(H2 O) HELIX 1 AA1 GLY B 31 TRP B 35 5 5 HELIX 2 AA2 ASN B 55 GLY B 65 1 11 HELIX 3 AA3 TYR B 111 GLY B 115 5 5 HELIX 4 AA4 PHE B 136 SER B 145 1 10 HELIX 5 AA5 GLY B 146 ASP B 151 5 6 HELIX 6 AA6 GLY A 31 TRP A 35 5 5 HELIX 7 AA7 ASN A 55 GLY A 65 1 11 HELIX 8 AA8 TYR A 111 GLY A 115 5 5 HELIX 9 AA9 PHE A 136 SER A 145 1 10 HELIX 10 AB1 GLY A 146 ASP A 151 5 6 SHEET 1 AA1 9 LYS B 128 PRO B 129 0 SHEET 2 AA1 9 TRP B 117 LEU B 123 -1 N LEU B 123 O LYS B 128 SHEET 3 AA1 9 PHE B 89 LYS B 106 -1 N PHE B 103 O ALA B 120 SHEET 4 AA1 9 ILE B 75 HIS B 86 -1 N LYS B 82 O GLY B 96 SHEET 5 AA1 9 ASN B 48 GLY B 54 -1 N ALA B 51 O LEU B 79 SHEET 6 AA1 9 LYS B 36 ARG B 43 -1 N ILE B 38 O ILE B 52 SHEET 7 AA1 9 PHE A 89 LYS A 106 -1 O GLU A 93 N SER B 42 SHEET 8 AA1 9 TRP A 117 LEU A 123 -1 O ALA A 120 N PHE A 103 SHEET 9 AA1 9 LYS A 128 PRO A 129 -1 O LYS A 128 N LEU A 123 SHEET 1 AA2 9 LYS B 128 PRO B 129 0 SHEET 2 AA2 9 TRP B 117 LEU B 123 -1 N LEU B 123 O LYS B 128 SHEET 3 AA2 9 PHE B 89 LYS B 106 -1 N PHE B 103 O ALA B 120 SHEET 4 AA2 9 LYS A 36 ARG A 43 -1 O SER A 42 N GLU B 93 SHEET 5 AA2 9 ASN A 48 GLY A 54 -1 O ILE A 52 N ILE A 38 SHEET 6 AA2 9 ILE A 75 HIS A 86 -1 O LEU A 79 N ALA A 51 SHEET 7 AA2 9 PHE A 89 LYS A 106 -1 O THR A 99 N SER A 80 SHEET 8 AA2 9 TRP A 117 LEU A 123 -1 O ALA A 120 N PHE A 103 SHEET 9 AA2 9 LYS A 128 PRO A 129 -1 O LYS A 128 N LEU A 123 LINK NZ ALYS B 78 CHA HEC B 201 1555 1555 1.33 LINK NZ BLYS B 78 CHA HEC B 201 1555 1555 1.37 LINK SG CYS B 140 CAB HEC B 201 1555 1555 1.82 LINK SG CYS B 143 CAC HEC B 201 1555 1555 1.81 LINK NE2 HIS B 144 FE HEC B 201 1555 1555 2.12 LINK NZ ALYS A 78 CHA HEC A 201 1555 1555 1.35 LINK NZ BLYS A 78 CHA HEC A 201 1555 1555 1.35 LINK SG CYS A 140 CAB HEC A 201 1555 1555 1.78 LINK SG CYS A 143 CAC HEC A 201 1555 1555 1.78 LINK NE2 HIS A 144 FE HEC A 201 1555 1555 2.13 LINK FE HEC B 201 O HOH B 318 1555 1555 2.37 LINK FE HEC A 201 O HOH A 377 1555 1555 2.32 CISPEP 1 HIS B 68 PRO B 69 0 -0.69 CISPEP 2 HIS A 68 PRO A 69 0 1.63 CISPEP 3 HIS A 68 PRO A 69 0 -0.51 SITE 1 AC1 18 PHE A 89 SER B 41 ARG B 43 ARG B 50 SITE 2 AC1 18 LYS B 78 ASP B 102 PHE B 103 ALA B 120 SITE 3 AC1 18 ARG B 121 CYS B 140 CYS B 143 HIS B 144 SITE 4 AC1 18 VAL B 153 PHE B 154 THR B 155 GOL B 202 SITE 5 AC1 18 HOH B 318 HOH B 324 SITE 1 AC2 7 ARG B 43 GLN B 46 ARG B 50 GLN B 100 SITE 2 AC2 7 ARG B 121 HEC B 201 HOH B 318 SITE 1 AC3 4 ARG A 66 PRO A 71 ASP A 72 ILE B 57 SITE 1 AC4 23 SER A 41 ARG A 43 ARG A 50 ALA A 51 SITE 2 AC4 23 ILE A 52 VAL A 77 LEU A 79 GLN A 100 SITE 3 AC4 23 ALA A 101 ASP A 102 PHE A 103 ALA A 120 SITE 4 AC4 23 ARG A 121 CYS A 140 CYS A 143 HIS A 144 SITE 5 AC4 23 VAL A 153 PHE A 154 THR A 155 HOH A 303 SITE 6 AC4 23 HOH A 337 HOH A 377 PHE B 89 SITE 1 AC5 22 SER A 41 ARG A 43 ARG A 50 LYS A 78 SITE 2 AC5 22 ASP A 102 PHE A 103 ALA A 120 ARG A 121 SITE 3 AC5 22 CYS A 140 MET A 141 GLY A 142 HIS A 144 SITE 4 AC5 22 SER A 145 GLY A 146 VAL A 153 PHE A 154 SITE 5 AC5 22 THR A 155 HOH A 337 HOH A 377 PHE B 89 SITE 6 AC5 22 GLY B 142 HOH B 347 SITE 1 AC6 22 SER A 41 ARG A 43 ARG A 50 LYS A 78 SITE 2 AC6 22 ASP A 102 PHE A 103 TYR A 119 ALA A 120 SITE 3 AC6 22 ARG A 121 ALA A 137 GLN A 138 GLU A 139 SITE 4 AC6 22 MET A 141 GLY A 142 CYS A 143 HIS A 144 SITE 5 AC6 22 VAL A 153 PHE A 154 THR A 155 HOH A 337 SITE 6 AC6 22 HOH A 377 PHE B 89 SITE 1 AC7 23 SER A 41 ARG A 43 ARG A 50 ALA A 51 SITE 2 AC7 23 ILE A 52 VAL A 77 LEU A 79 GLN A 100 SITE 3 AC7 23 ALA A 101 ASP A 102 PHE A 103 ALA A 120 SITE 4 AC7 23 ARG A 121 CYS A 140 CYS A 143 HIS A 144 SITE 5 AC7 23 VAL A 153 PHE A 154 THR A 155 HOH A 303 SITE 6 AC7 23 HOH A 337 HOH A 377 PHE B 89 CRYST1 46.623 81.647 85.264 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011728 0.00000