HEADER ISOMERASE 03-SEP-18 6HJG TITLE TRYPANOSOMA CRUZI PROLINE RACEMASE IN COMPLEX WITH INHIBITOR OXOPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE RACEMASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TCPA45-A,TCPRACA,RTCPA45; COMPND 5 EC: 5.1.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: PA45-A, TC00.1047053506795.80; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS PROLINE RACEMASE, DRUG DESIGN, MICHAEL REACTION, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.SAUL,A.HAOUZ,P.URIAC,A.BLONDEL,P.MINOPRIO REVDAT 2 17-JAN-24 6HJG 1 REMARK REVDAT 1 07-NOV-18 6HJG 0 JRNL AUTH P.A.AMARAL,D.AUTHEMAN,G.D.DE MELO,N.GOUAULT,J.F.CUPIF, JRNL AUTH 2 S.GOYARD,P.DUTRA,N.COATNOAN,A.COSSON,D.MONET,F.SAUL,A.HAOUZ, JRNL AUTH 3 P.URIAC,A.BLONDEL,P.MINOPRIO JRNL TITL DESIGNED MONO- AND DI-COVALENT INHIBITORS TRAP MODELED JRNL TITL 2 FUNCTIONAL MOTIONS FOR TRYPANOSOMA CRUZI PROLINE RACEMASE IN JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF PLOS NEGL TROP DIS V. 12 06853 2018 JRNL REFN ESSN 1935-2735 JRNL PMID 30372428 JRNL DOI 10.1371/JOURNAL.PNTD.0006853 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 59988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 40 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2116 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04000 REMARK 3 B22 (A**2) : -1.95000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5692 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5437 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7734 ; 1.487 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12501 ; 0.772 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ; 6.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;37.893 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 935 ;14.409 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;13.840 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 882 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6548 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1275 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1W61 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM PHOSPHATE DIBASIC 21% REMARK 280 (W/V) PEG-3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.62000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.66550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.62000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.66550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 790 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 10 REMARK 465 LYS A 11 REMARK 465 TYR A 12 REMARK 465 LYS A 13 REMARK 465 ILE A 14 REMARK 465 ILE A 15 REMARK 465 LYS A 16 REMARK 465 GLY A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 19 REMARK 465 LYS A 20 REMARK 465 GLU A 21 REMARK 465 LYS A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 ARG A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 ARG A 30 REMARK 465 ARG A 31 REMARK 465 GLU A 32 REMARK 465 HIS A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 LYS A 36 REMARK 465 ARG A 37 REMARK 465 PRO A 203 REMARK 465 LYS A 204 REMARK 465 PRO A 205 REMARK 465 TYR A 206 REMARK 465 GLY A 207 REMARK 465 ILE A 395 REMARK 465 TRP A 396 REMARK 465 SER A 397 REMARK 465 SER A 398 REMARK 465 SER A 399 REMARK 465 VAL A 400 REMARK 465 ASP A 401 REMARK 465 LYS A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 404 REMARK 465 ALA A 405 REMARK 465 ALA A 406 REMARK 465 LEU A 407 REMARK 465 GLU A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 GLU B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 PHE B 8 REMARK 465 ASP B 9 REMARK 465 GLN B 10 REMARK 465 LYS B 11 REMARK 465 TYR B 12 REMARK 465 LYS B 13 REMARK 465 ILE B 14 REMARK 465 ILE B 15 REMARK 465 LYS B 16 REMARK 465 GLY B 17 REMARK 465 GLU B 18 REMARK 465 LYS B 19 REMARK 465 LYS B 20 REMARK 465 SER B 397 REMARK 465 SER B 398 REMARK 465 SER B 399 REMARK 465 VAL B 400 REMARK 465 ASP B 401 REMARK 465 LYS B 402 REMARK 465 LEU B 403 REMARK 465 ALA B 404 REMARK 465 ALA B 405 REMARK 465 ALA B 406 REMARK 465 LEU B 407 REMARK 465 GLU B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLU B 355 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 621 O HOH A 718 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 -5.00 67.89 REMARK 500 SER A 179 -7.39 -165.16 REMARK 500 ASP A 197 60.29 22.17 REMARK 500 ASN A 266 30.74 -151.20 REMARK 500 ARG A 293 58.62 34.54 REMARK 500 CYS A 300 111.07 74.60 REMARK 500 LYS B 152 -8.06 78.92 REMARK 500 SER B 179 12.88 -155.47 REMARK 500 ASN B 266 65.48 -166.37 REMARK 500 CYS B 300 112.29 77.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SHF A 500 REMARK 610 SHF B 502 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SHF A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SHF B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W61 RELATED DB: PDB DBREF 6HJG A 2 393 UNP Q4DA80 PRCMA_TRYCC 32 423 DBREF 6HJG B 2 393 UNP Q4DA80 PRCMA_TRYCC 32 423 SEQADV 6HJG MET A 1 UNP Q4DA80 INITIATING METHIONINE SEQADV 6HJG ILE A 118 UNP Q4DA80 MET 148 CONFLICT SEQADV 6HJG TYR A 394 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ILE A 395 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG TRP A 396 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG SER A 397 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG SER A 398 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG SER A 399 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG VAL A 400 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ASP A 401 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG LYS A 402 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG LEU A 403 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ALA A 404 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ALA A 405 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ALA A 406 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG LEU A 407 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG GLU A 408 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS A 409 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS A 410 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS A 411 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS A 412 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS A 413 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS A 414 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG MET B 1 UNP Q4DA80 INITIATING METHIONINE SEQADV 6HJG ILE B 118 UNP Q4DA80 MET 148 CONFLICT SEQADV 6HJG TYR B 394 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ILE B 395 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG TRP B 396 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG SER B 397 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG SER B 398 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG SER B 399 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG VAL B 400 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ASP B 401 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG LYS B 402 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG LEU B 403 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ALA B 404 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ALA B 405 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG ALA B 406 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG LEU B 407 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG GLU B 408 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS B 409 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS B 410 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS B 411 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS B 412 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS B 413 UNP Q4DA80 EXPRESSION TAG SEQADV 6HJG HIS B 414 UNP Q4DA80 EXPRESSION TAG SEQRES 1 A 414 MET GLY GLN GLU LYS LEU LEU PHE ASP GLN LYS TYR LYS SEQRES 2 A 414 ILE ILE LYS GLY GLU LYS LYS GLU LYS LYS LYS ASN GLN SEQRES 3 A 414 ARG ALA ASN ARG ARG GLU HIS GLN GLN LYS ARG GLU ILE SEQRES 4 A 414 MET ARG PHE LYS LYS SER PHE THR CYS ILE ASP MET HIS SEQRES 5 A 414 THR GLU GLY GLU ALA ALA ARG ILE VAL THR SER GLY LEU SEQRES 6 A 414 PRO HIS ILE PRO GLY SER ASN MET ALA GLU LYS LYS ALA SEQRES 7 A 414 TYR LEU GLN GLU ASN MET ASP TYR LEU ARG ARG GLY ILE SEQRES 8 A 414 MET LEU GLU PRO ARG GLY HIS ASP ASP MET PHE GLY ALA SEQRES 9 A 414 PHE LEU PHE ASP PRO ILE GLU GLU GLY ALA ASP LEU GLY SEQRES 10 A 414 ILE VAL PHE MET ASP THR GLY GLY TYR LEU ASN MET CYS SEQRES 11 A 414 GLY HIS ASN SER ILE ALA ALA VAL THR ALA ALA VAL GLU SEQRES 12 A 414 THR GLY ILE VAL SER VAL PRO ALA LYS ALA THR ASN VAL SEQRES 13 A 414 PRO VAL VAL LEU ASP THR PRO ALA GLY LEU VAL ARG GLY SEQRES 14 A 414 THR ALA HIS LEU GLN SER GLY THR GLU SER GLU VAL SER SEQRES 15 A 414 ASN ALA SER ILE ILE ASN VAL PRO SER PHE LEU TYR GLN SEQRES 16 A 414 GLN ASP VAL VAL VAL VAL LEU PRO LYS PRO TYR GLY GLU SEQRES 17 A 414 VAL ARG VAL ASP ILE ALA PHE GLY GLY ASN PHE PHE ALA SEQRES 18 A 414 ILE VAL PRO ALA GLU GLN LEU GLY ILE ASP ILE SER VAL SEQRES 19 A 414 GLN ASN LEU SER ARG LEU GLN GLU ALA GLY GLU LEU LEU SEQRES 20 A 414 ARG THR GLU ILE ASN ARG SER VAL LYS VAL GLN HIS PRO SEQRES 21 A 414 GLN LEU PRO HIS ILE ASN THR VAL ASP CYS VAL GLU ILE SEQRES 22 A 414 TYR GLY PRO PRO THR ASN PRO GLU ALA ASN TYR LYS ASN SEQRES 23 A 414 VAL VAL ILE PHE GLY ASN ARG GLN ALA ASP ARG SER PRO SEQRES 24 A 414 CYS GLY THR GLY THR SER ALA LYS MET ALA THR LEU TYR SEQRES 25 A 414 ALA LYS GLY GLN LEU ARG ILE GLY GLU THR PHE VAL TYR SEQRES 26 A 414 GLU SER ILE LEU GLY SER LEU PHE GLN GLY ARG VAL LEU SEQRES 27 A 414 GLY GLU GLU ARG ILE PRO GLY VAL LYS VAL PRO VAL THR SEQRES 28 A 414 LYS ASP ALA GLU GLU GLY MET LEU VAL VAL THR ALA GLU SEQRES 29 A 414 ILE THR GLY LYS ALA PHE ILE MET GLY PHE ASN THR MET SEQRES 30 A 414 LEU PHE ASP PRO THR ASP PRO PHE LYS ASN GLY PHE THR SEQRES 31 A 414 LEU LYS GLN TYR ILE TRP SER SER SER VAL ASP LYS LEU SEQRES 32 A 414 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 414 MET GLY GLN GLU LYS LEU LEU PHE ASP GLN LYS TYR LYS SEQRES 2 B 414 ILE ILE LYS GLY GLU LYS LYS GLU LYS LYS LYS ASN GLN SEQRES 3 B 414 ARG ALA ASN ARG ARG GLU HIS GLN GLN LYS ARG GLU ILE SEQRES 4 B 414 MET ARG PHE LYS LYS SER PHE THR CYS ILE ASP MET HIS SEQRES 5 B 414 THR GLU GLY GLU ALA ALA ARG ILE VAL THR SER GLY LEU SEQRES 6 B 414 PRO HIS ILE PRO GLY SER ASN MET ALA GLU LYS LYS ALA SEQRES 7 B 414 TYR LEU GLN GLU ASN MET ASP TYR LEU ARG ARG GLY ILE SEQRES 8 B 414 MET LEU GLU PRO ARG GLY HIS ASP ASP MET PHE GLY ALA SEQRES 9 B 414 PHE LEU PHE ASP PRO ILE GLU GLU GLY ALA ASP LEU GLY SEQRES 10 B 414 ILE VAL PHE MET ASP THR GLY GLY TYR LEU ASN MET CYS SEQRES 11 B 414 GLY HIS ASN SER ILE ALA ALA VAL THR ALA ALA VAL GLU SEQRES 12 B 414 THR GLY ILE VAL SER VAL PRO ALA LYS ALA THR ASN VAL SEQRES 13 B 414 PRO VAL VAL LEU ASP THR PRO ALA GLY LEU VAL ARG GLY SEQRES 14 B 414 THR ALA HIS LEU GLN SER GLY THR GLU SER GLU VAL SER SEQRES 15 B 414 ASN ALA SER ILE ILE ASN VAL PRO SER PHE LEU TYR GLN SEQRES 16 B 414 GLN ASP VAL VAL VAL VAL LEU PRO LYS PRO TYR GLY GLU SEQRES 17 B 414 VAL ARG VAL ASP ILE ALA PHE GLY GLY ASN PHE PHE ALA SEQRES 18 B 414 ILE VAL PRO ALA GLU GLN LEU GLY ILE ASP ILE SER VAL SEQRES 19 B 414 GLN ASN LEU SER ARG LEU GLN GLU ALA GLY GLU LEU LEU SEQRES 20 B 414 ARG THR GLU ILE ASN ARG SER VAL LYS VAL GLN HIS PRO SEQRES 21 B 414 GLN LEU PRO HIS ILE ASN THR VAL ASP CYS VAL GLU ILE SEQRES 22 B 414 TYR GLY PRO PRO THR ASN PRO GLU ALA ASN TYR LYS ASN SEQRES 23 B 414 VAL VAL ILE PHE GLY ASN ARG GLN ALA ASP ARG SER PRO SEQRES 24 B 414 CYS GLY THR GLY THR SER ALA LYS MET ALA THR LEU TYR SEQRES 25 B 414 ALA LYS GLY GLN LEU ARG ILE GLY GLU THR PHE VAL TYR SEQRES 26 B 414 GLU SER ILE LEU GLY SER LEU PHE GLN GLY ARG VAL LEU SEQRES 27 B 414 GLY GLU GLU ARG ILE PRO GLY VAL LYS VAL PRO VAL THR SEQRES 28 B 414 LYS ASP ALA GLU GLU GLY MET LEU VAL VAL THR ALA GLU SEQRES 29 B 414 ILE THR GLY LYS ALA PHE ILE MET GLY PHE ASN THR MET SEQRES 30 B 414 LEU PHE ASP PRO THR ASP PRO PHE LYS ASN GLY PHE THR SEQRES 31 B 414 LEU LYS GLN TYR ILE TRP SER SER SER VAL ASP LYS LEU SEQRES 32 B 414 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET SHF A 500 4 HET PO4 B 501 5 HET SHF B 502 5 HETNAM SHF LAEVULINIC ACID HETNAM PO4 PHOSPHATE ION HETSYN SHF LEVULINIC ACID FORMUL 3 SHF 2(C5 H8 O3) FORMUL 4 PO4 O4 P 3- FORMUL 6 HOH *347(H2 O) HELIX 1 AA1 ILE A 39 LYS A 43 5 5 HELIX 2 AA2 ASN A 72 MET A 84 1 13 HELIX 3 AA3 MET A 84 LEU A 93 1 10 HELIX 4 AA4 CYS A 130 THR A 144 1 15 HELIX 5 AA5 GLU A 226 LEU A 228 5 3 HELIX 6 AA6 ASN A 236 VAL A 255 1 20 HELIX 7 AA7 CYS A 300 LYS A 314 1 15 HELIX 8 AA8 LYS B 22 ILE B 39 1 18 HELIX 9 AA9 ASN B 72 MET B 84 1 13 HELIX 10 AB1 MET B 84 LEU B 93 1 10 HELIX 11 AB2 CYS B 130 THR B 144 1 15 HELIX 12 AB3 ALA B 225 GLY B 229 1 5 HELIX 13 AB4 ASN B 236 VAL B 255 1 20 HELIX 14 AB5 CYS B 300 LYS B 314 1 15 SHEET 1 A 5 GLY A 117 ASP A 122 0 SHEET 2 A 5 PHE A 102 PHE A 107 -1 SHEET 3 A 5 GLU A 56 SER A 63 1 SHEET 4 A 5 PHE A 46 THR A 53 -1 SHEET 5 A 5 ALA A 369 MET A 377 -1 SHEET 1 B11 ASN A 155 THR A 162 0 SHEET 2 B11 GLY A 165 LEU A 173 -1 SHEET 3 B11 VAL A 181 ILE A 187 -1 SHEET 4 B11 MET A 358 GLY A 367 -1 SHEET 5 B11 LEU A 332 ILE A 343 -1 SHEET 6 B11 THR A 322 SER A 327 -1 SHEET 7 B11 TYR A 284 ILE A 289 1 SHEET 8 B11 VAL A 268 GLY A 275 -1 SHEET 9 B11 PHE A 219 PRO A 224 1 SHEET 10 B11 ASP A 212 PHE A 215 -1 SHEET 11 B11 PHE A 192 GLN A 195 -1 SHEET 1 C 2 VAL A 198 VAL A 200 0 SHEET 2 C 2 VAL A 209 VAL A 211 -1 SHEET 1 D11 THR B 322 GLU B 326 0 SHEET 2 D11 LEU B 332 ILE B 343 -1 SHEET 3 D11 MET B 358 GLY B 367 -1 SHEET 4 D11 VAL B 181 ILE B 187 -1 SHEET 5 D11 GLY B 165 LEU B 173 -1 SHEET 6 D11 ASN B 155 THR B 162 -1 SHEET 7 D11 LEU B 116 ASP B 122 1 SHEET 8 D11 PHE B 102 PHE B 107 -1 SHEET 9 D11 GLU B 56 SER B 63 1 SHEET 10 D11 LYS B 44 THR B 53 -1 SHEET 11 D11 ALA B 369 PHE B 379 -1 SHEET 1 E 2 VAL B 198 VAL B 201 0 SHEET 2 E 2 GLU B 208 VAL B 211 -1 SHEET 1 F 5 LYS B 285 PHE B 290 0 SHEET 2 F 5 CYS B 270 GLY B 275 -1 SHEET 3 F 5 PHE B 219 PRO B 224 1 SHEET 4 F 5 ASP B 212 PHE B 215 -1 SHEET 5 F 5 PHE B 192 GLN B 195 -1 CISPEP 1 GLU A 94 PRO A 95 0 7.24 CISPEP 2 GLU B 94 PRO B 95 0 4.25 CISPEP 3 LYS B 204 PRO B 205 0 5.05 SITE 1 AC1 7 CYS A 130 GLY A 131 HIS A 132 ASP A 296 SITE 2 AC1 7 CYS A 300 GLY A 301 THR A 302 SITE 1 AC2 5 THR B 177 GLU B 178 SER B 179 GLU B 180 SITE 2 AC2 5 HOH B 719 SITE 1 AC3 7 CYS B 130 GLY B 131 HIS B 132 ASP B 296 SITE 2 AC3 7 CYS B 300 GLY B 301 THR B 302 CRYST1 129.240 91.331 85.632 90.00 126.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007738 0.000000 0.005714 0.00000 SCALE2 0.000000 0.010949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014517 0.00000