HEADER PROTEIN BINDING 04-SEP-18 6HJL TITLE AFFIMER:BCLXL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 8 CHAIN: B, E, F; COMPND 9 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: AFFIMER ADB13; COMPND 13 CHAIN: C, D, H; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: AFFIMER ADB13; COMPND 17 CHAIN: G; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BCL2L1, BCL2L, BCLX; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFFIMER, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.A.MILES,C.H.TRINH,D.C.TOMLINSON,A.J.WILSON,T.A.EDWARDS REVDAT 2 15-MAY-24 6HJL 1 JRNL REVDAT 1 18-MAR-20 6HJL 0 JRNL AUTH J.A.MILES,F.HOBOR,J.TAYLOR,C.TIEDE,P.R.ROWELL,C.H.TRINH, JRNL AUTH 2 J.JACKSON,F.NADAT,H.F.KYLE,B.I.M.WICKY,J.CLARKE, JRNL AUTH 3 D.C.TOMLINSON,A.J.WILSON,T.A.EDWARDS JRNL TITL SELECTIVE AFFIMERS RECOGNIZE BCL-2 FAMILY PROTEINS THROUGH JRNL TITL 2 NON-CANONICAL STRUCTURAL MOTIFS JRNL REF BIORXIV 2020 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/651364V1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 62008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3227 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7633 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6906 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10315 ; 1.548 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15983 ; 0.971 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 896 ; 6.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 391 ;33.827 ;24.527 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1309 ;15.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;15.917 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1081 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8451 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3626 ; 5.311 ; 6.592 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3625 ; 5.311 ; 6.590 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4508 ; 7.873 ; 9.867 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4509 ; 7.872 ; 9.869 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4007 ; 5.449 ; 7.107 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4008 ; 5.449 ; 7.108 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5808 ; 8.503 ;10.413 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8763 ;11.133 ;72.718 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8756 ;11.112 ;72.661 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9174 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 55.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, H, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER E 2 REMARK 465 SER F 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 MET B 159 CG SD CE REMARK 470 GLU C 2 CG CD OE1 OE2 REMARK 470 GLU D 2 CG CD OE1 OE2 REMARK 470 GLN E 3 CG CD OE1 NE2 REMARK 470 ARG E 132 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 3 CG CD OE1 NE2 REMARK 470 ARG F 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 132 CG CD NE CZ NH1 NH2 REMARK 470 ASP F 133 CG OD1 OD2 REMARK 470 GLU H 2 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO G 72 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 PRO G 72 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 110 2.75 -67.74 REMARK 500 ASP A 133 44.45 -97.48 REMARK 500 VAL B 161 -35.05 -39.17 REMARK 500 ASN B 185 32.27 -95.68 REMARK 500 SER C 4 -37.84 -33.81 REMARK 500 VAL C 29 -65.99 -106.52 REMARK 500 LEU C 42 -118.50 51.01 REMARK 500 TRP C 76 -56.53 52.96 REMARK 500 LEU D 42 -118.66 46.92 REMARK 500 LEU D 74 -91.99 -104.46 REMARK 500 PHE F 131 44.55 -102.96 REMARK 500 ASP F 133 9.79 -63.58 REMARK 500 LEU H 25 58.17 -148.83 REMARK 500 LEU H 42 -119.14 54.04 REMARK 500 LEU H 74 -82.90 -97.94 REMARK 500 ARG G 30 149.28 -178.41 REMARK 500 VAL G 32 -61.93 -93.28 REMARK 500 LEU G 42 -115.53 49.02 REMARK 500 PRO G 72 150.85 -46.93 REMARK 500 TRP G 76 -75.51 55.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 216 DISTANCE = 8.58 ANGSTROMS DBREF 6HJL A 83 197 UNP Q07817 B2CL1_HUMAN 83 197 DBREF 6HJL B 83 195 UNP Q07817 B2CL1_HUMAN 83 195 DBREF 6HJL C 2 91 PDB 6HJL 6HJL 2 91 DBREF 6HJL D 2 91 PDB 6HJL 6HJL 2 91 DBREF 6HJL E 83 195 UNP Q07817 B2CL1_HUMAN 83 195 DBREF 6HJL F 83 195 UNP Q07817 B2CL1_HUMAN 83 195 DBREF 6HJL H 2 91 PDB 6HJL 6HJL 2 91 DBREF 6HJL G 4 91 PDB 6HJL 6HJL 4 91 SEQADV 6HJL SER A 2 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN A 3 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER A 4 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASN A 5 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ARG A 6 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLU A 7 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU A 8 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL A 9 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL A 10 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASP A 11 UNP Q07817 EXPRESSION TAG SEQADV 6HJL PHE A 12 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU A 13 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER A 14 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR A 15 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS A 16 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU A 17 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER A 18 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN A 19 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS A 20 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLY A 21 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR A 22 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER A 23 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TRP A 24 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER A 25 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN A 26 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER B 2 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN B 3 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER B 4 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASN B 5 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ARG B 6 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLU B 7 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU B 8 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL B 9 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL B 10 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASP B 11 UNP Q07817 EXPRESSION TAG SEQADV 6HJL PHE B 12 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU B 13 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER B 14 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR B 15 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS B 16 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU B 17 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER B 18 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN B 19 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS B 20 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLY B 21 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR B 22 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER B 23 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TRP B 24 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER B 25 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN B 26 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER E 2 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN E 3 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER E 4 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASN E 5 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ARG E 6 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLU E 7 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU E 8 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL E 9 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL E 10 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASP E 11 UNP Q07817 EXPRESSION TAG SEQADV 6HJL PHE E 12 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU E 13 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER E 14 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR E 15 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS E 16 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU E 17 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER E 18 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN E 19 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS E 20 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLY E 21 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR E 22 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER E 23 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TRP E 24 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER E 25 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN E 26 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER F 2 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN F 3 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER F 4 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASN F 5 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ARG F 6 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLU F 7 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU F 8 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL F 9 UNP Q07817 EXPRESSION TAG SEQADV 6HJL VAL F 10 UNP Q07817 EXPRESSION TAG SEQADV 6HJL ASP F 11 UNP Q07817 EXPRESSION TAG SEQADV 6HJL PHE F 12 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU F 13 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER F 14 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR F 15 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS F 16 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LEU F 17 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER F 18 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN F 19 UNP Q07817 EXPRESSION TAG SEQADV 6HJL LYS F 20 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLY F 21 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TYR F 22 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER F 23 UNP Q07817 EXPRESSION TAG SEQADV 6HJL TRP F 24 UNP Q07817 EXPRESSION TAG SEQADV 6HJL SER F 25 UNP Q07817 EXPRESSION TAG SEQADV 6HJL GLN F 26 UNP Q07817 EXPRESSION TAG SEQRES 1 A 140 SER GLN SER ASN ARG GLU LEU VAL VAL ASP PHE LEU SER SEQRES 2 A 140 TYR LYS LEU SER GLN LYS GLY TYR SER TRP SER GLN MET SEQRES 3 A 140 ALA ALA VAL LYS GLN ALA LEU ARG GLU ALA GLY ASP GLU SEQRES 4 A 140 PHE GLU LEU ARG TYR ARG ARG ALA PHE SER ASP LEU THR SEQRES 5 A 140 SER GLN LEU HIS ILE THR PRO GLY THR ALA TYR GLN SER SEQRES 6 A 140 PHE GLU GLN VAL VAL ASN GLU LEU PHE ARG ASP GLY VAL SEQRES 7 A 140 ASN TRP GLY ARG ILE VAL ALA PHE PHE SER PHE GLY GLY SEQRES 8 A 140 ALA LEU CYS VAL GLU SER VAL ASP LYS GLU MET GLN VAL SEQRES 9 A 140 LEU VAL SER ARG ILE ALA ALA TRP MET ALA THR TYR LEU SEQRES 10 A 140 ASN ASP HIS LEU GLU PRO TRP ILE GLN GLU ASN GLY GLY SEQRES 11 A 140 TRP ASP THR PHE VAL GLU LEU TYR GLY ASN SEQRES 1 B 138 SER GLN SER ASN ARG GLU LEU VAL VAL ASP PHE LEU SER SEQRES 2 B 138 TYR LYS LEU SER GLN LYS GLY TYR SER TRP SER GLN MET SEQRES 3 B 138 ALA ALA VAL LYS GLN ALA LEU ARG GLU ALA GLY ASP GLU SEQRES 4 B 138 PHE GLU LEU ARG TYR ARG ARG ALA PHE SER ASP LEU THR SEQRES 5 B 138 SER GLN LEU HIS ILE THR PRO GLY THR ALA TYR GLN SER SEQRES 6 B 138 PHE GLU GLN VAL VAL ASN GLU LEU PHE ARG ASP GLY VAL SEQRES 7 B 138 ASN TRP GLY ARG ILE VAL ALA PHE PHE SER PHE GLY GLY SEQRES 8 B 138 ALA LEU CYS VAL GLU SER VAL ASP LYS GLU MET GLN VAL SEQRES 9 B 138 LEU VAL SER ARG ILE ALA ALA TRP MET ALA THR TYR LEU SEQRES 10 B 138 ASN ASP HIS LEU GLU PRO TRP ILE GLN GLU ASN GLY GLY SEQRES 11 B 138 TRP ASP THR PHE VAL GLU LEU TYR SEQRES 1 C 90 GLU ASN SER LEU GLU ILE GLU GLU LEU ALA ARG PHE ALA SEQRES 2 C 90 VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU LEU GLU SEQRES 3 C 90 PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN MET PHE SER SEQRES 4 C 90 TRP LEU ASP TRP GLU GLU THR MET TYR TYR LEU THR LEU SEQRES 5 C 90 GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR GLU ALA SEQRES 6 C 90 LYS VAL TRP VAL LYS PRO ALA LEU LEU TRP SER PRO HIS SEQRES 7 C 90 GLY ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO VAL SEQRES 1 D 90 GLU ASN SER LEU GLU ILE GLU GLU LEU ALA ARG PHE ALA SEQRES 2 D 90 VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU LEU GLU SEQRES 3 D 90 PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN MET PHE SER SEQRES 4 D 90 TRP LEU ASP TRP GLU GLU THR MET TYR TYR LEU THR LEU SEQRES 5 D 90 GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR GLU ALA SEQRES 6 D 90 LYS VAL TRP VAL LYS PRO ALA LEU LEU TRP SER PRO HIS SEQRES 7 D 90 GLY ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO VAL SEQRES 1 E 138 SER GLN SER ASN ARG GLU LEU VAL VAL ASP PHE LEU SER SEQRES 2 E 138 TYR LYS LEU SER GLN LYS GLY TYR SER TRP SER GLN MET SEQRES 3 E 138 ALA ALA VAL LYS GLN ALA LEU ARG GLU ALA GLY ASP GLU SEQRES 4 E 138 PHE GLU LEU ARG TYR ARG ARG ALA PHE SER ASP LEU THR SEQRES 5 E 138 SER GLN LEU HIS ILE THR PRO GLY THR ALA TYR GLN SER SEQRES 6 E 138 PHE GLU GLN VAL VAL ASN GLU LEU PHE ARG ASP GLY VAL SEQRES 7 E 138 ASN TRP GLY ARG ILE VAL ALA PHE PHE SER PHE GLY GLY SEQRES 8 E 138 ALA LEU CYS VAL GLU SER VAL ASP LYS GLU MET GLN VAL SEQRES 9 E 138 LEU VAL SER ARG ILE ALA ALA TRP MET ALA THR TYR LEU SEQRES 10 E 138 ASN ASP HIS LEU GLU PRO TRP ILE GLN GLU ASN GLY GLY SEQRES 11 E 138 TRP ASP THR PHE VAL GLU LEU TYR SEQRES 1 F 138 SER GLN SER ASN ARG GLU LEU VAL VAL ASP PHE LEU SER SEQRES 2 F 138 TYR LYS LEU SER GLN LYS GLY TYR SER TRP SER GLN MET SEQRES 3 F 138 ALA ALA VAL LYS GLN ALA LEU ARG GLU ALA GLY ASP GLU SEQRES 4 F 138 PHE GLU LEU ARG TYR ARG ARG ALA PHE SER ASP LEU THR SEQRES 5 F 138 SER GLN LEU HIS ILE THR PRO GLY THR ALA TYR GLN SER SEQRES 6 F 138 PHE GLU GLN VAL VAL ASN GLU LEU PHE ARG ASP GLY VAL SEQRES 7 F 138 ASN TRP GLY ARG ILE VAL ALA PHE PHE SER PHE GLY GLY SEQRES 8 F 138 ALA LEU CYS VAL GLU SER VAL ASP LYS GLU MET GLN VAL SEQRES 9 F 138 LEU VAL SER ARG ILE ALA ALA TRP MET ALA THR TYR LEU SEQRES 10 F 138 ASN ASP HIS LEU GLU PRO TRP ILE GLN GLU ASN GLY GLY SEQRES 11 F 138 TRP ASP THR PHE VAL GLU LEU TYR SEQRES 1 H 90 GLU ASN SER LEU GLU ILE GLU GLU LEU ALA ARG PHE ALA SEQRES 2 H 90 VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU LEU GLU SEQRES 3 H 90 PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN MET PHE SER SEQRES 4 H 90 TRP LEU ASP TRP GLU GLU THR MET TYR TYR LEU THR LEU SEQRES 5 H 90 GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR GLU ALA SEQRES 6 H 90 LYS VAL TRP VAL LYS PRO ALA LEU LEU TRP SER PRO HIS SEQRES 7 H 90 GLY ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO VAL SEQRES 1 G 88 SER LEU GLU ILE GLU GLU LEU ALA ARG PHE ALA VAL ASP SEQRES 2 G 88 GLU HIS ASN LYS LYS GLU ASN ALA LEU LEU GLU PHE VAL SEQRES 3 G 88 ARG VAL VAL LYS ALA LYS GLU GLN MET PHE SER TRP LEU SEQRES 4 G 88 ASP TRP GLU GLU THR MET TYR TYR LEU THR LEU GLU ALA SEQRES 5 G 88 LYS ASP GLY GLY LYS LYS LYS LEU TYR GLU ALA LYS VAL SEQRES 6 G 88 TRP VAL LYS PRO ALA LEU LEU TRP SER PRO HIS GLY ASN SEQRES 7 G 88 PHE LYS GLU LEU GLN GLU PHE LYS PRO VAL FORMUL 9 HOH *260(H2 O) HELIX 1 AA1 SER A 2 LYS A 20 1 19 HELIX 2 AA2 SER A 25 TYR A 101 1 21 HELIX 3 AA3 TYR A 101 SER A 110 1 10 HELIX 4 AA4 ALA A 119 PHE A 131 1 13 HELIX 5 AA5 ASN A 136 LYS A 157 1 22 HELIX 6 AA6 GLU A 158 VAL A 161 5 4 HELIX 7 AA7 LEU A 162 LEU A 178 1 17 HELIX 8 AA8 LEU A 178 ASN A 185 1 8 HELIX 9 AA9 GLY A 187 ASN A 197 1 11 HELIX 10 AB1 GLN B 3 LYS B 20 1 18 HELIX 11 AB2 SER B 25 TYR B 101 1 21 HELIX 12 AB3 TYR B 101 SER B 110 1 10 HELIX 13 AB4 ALA B 119 PHE B 131 1 13 HELIX 14 AB5 ASN B 136 LYS B 157 1 22 HELIX 15 AB6 VAL B 161 LEU B 178 1 18 HELIX 16 AB7 LEU B 178 ASN B 185 1 8 HELIX 17 AB8 GLY B 187 TYR B 195 1 9 HELIX 18 AB9 ASN C 3 ASN C 23 1 21 HELIX 19 AC1 ASN D 3 GLU D 22 1 20 HELIX 20 AC2 SER E 4 LYS E 20 1 17 HELIX 21 AC3 SER E 25 TYR E 101 1 21 HELIX 22 AC4 TYR E 101 SER E 110 1 10 HELIX 23 AC5 ALA E 119 PHE E 131 1 13 HELIX 24 AC6 ASN E 136 LYS E 157 1 22 HELIX 25 AC7 VAL E 161 LEU E 178 1 18 HELIX 26 AC8 LEU E 178 ASN E 185 1 8 HELIX 27 AC9 GLY E 186 TYR E 195 1 10 HELIX 28 AD1 SER F 4 LYS F 20 1 17 HELIX 29 AD2 SER F 25 TYR F 101 1 21 HELIX 30 AD3 TYR F 101 SER F 110 1 10 HELIX 31 AD4 ALA F 119 PHE F 131 1 13 HELIX 32 AD5 ASN F 136 LYS F 157 1 22 HELIX 33 AD6 MET F 159 VAL F 161 5 3 HELIX 34 AD7 LEU F 162 HIS F 177 1 16 HELIX 35 AD8 LEU F 178 ASN F 185 1 8 HELIX 36 AD9 GLY F 186 TYR F 195 1 10 HELIX 37 AE1 ASN H 3 GLU H 22 1 20 HELIX 38 AE2 LEU G 5 GLU G 22 1 18 SHEET 1 AA1 4 GLU C 27 TRP C 41 0 SHEET 2 AA1 4 TRP C 44 ASP C 57 -1 O TYR C 50 N LYS C 35 SHEET 3 AA1 4 LYS C 60 PRO C 72 -1 O ALA C 66 N LEU C 51 SHEET 4 AA1 4 ASN C 81 PRO C 90 -1 O LYS C 89 N GLU C 65 SHEET 1 AA2 4 GLU D 27 TRP D 41 0 SHEET 2 AA2 4 TRP D 44 ASP D 57 -1 O TYR D 50 N LYS D 35 SHEET 3 AA2 4 LYS D 60 LYS D 71 -1 O ALA D 66 N LEU D 51 SHEET 4 AA2 4 PHE D 82 PRO D 90 -1 O GLU D 84 N TRP D 69 SHEET 1 AA3 4 GLU H 27 TRP H 41 0 SHEET 2 AA3 4 TRP H 44 ASP H 57 -1 O LYS H 56 N GLU H 27 SHEET 3 AA3 4 LYS H 60 LYS H 71 -1 O ALA H 66 N LEU H 51 SHEET 4 AA3 4 PHE H 82 PRO H 90 -1 O GLU H 84 N TRP H 69 SHEET 1 AA4 4 GLU G 27 TRP G 41 0 SHEET 2 AA4 4 TRP G 44 ASP G 57 -1 O TYR G 50 N LYS G 35 SHEET 3 AA4 4 LYS G 60 PRO G 72 -1 O VAL G 68 N TYR G 49 SHEET 4 AA4 4 ASN G 81 PRO G 90 -1 O LYS G 89 N GLU G 65 CRYST1 68.270 87.290 112.180 90.00 96.18 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014648 0.000000 0.001586 0.00000 SCALE2 0.000000 0.011456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008966 0.00000