data_6HKC # _entry.id 6HKC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6HKC pdb_00006hkc 10.2210/pdb6hkc/pdb WWPDB D_1200011634 ? ? BMRB 27581 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 27581 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6HKC _pdbx_database_status.recvd_initial_deposition_date 2018-09-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Volkov, A.N.' 1 ? 'Buts, L.' 2 ? 'Van Molle, I.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 363 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Secreted amyloid-beta precursor protein functions as a GABABR1a ligand to modulate synaptic transmission.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aao4827 _citation.pdbx_database_id_PubMed 30630900 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rice, H.C.' 1 0000-0002-5818-4338 primary 'de Malmazet, D.' 2 ? primary 'Schreurs, A.' 3 0000-0001-5407-7933 primary 'Frere, S.' 4 0000-0001-6819-2211 primary 'Van Molle, I.' 5 0000-0003-0114-9379 primary 'Volkov, A.N.' 6 ? primary 'Creemers, E.' 7 0000-0002-9675-8195 primary 'Vertkin, I.' 8 0000-0001-9395-7968 primary 'Nys, J.' 9 ? primary 'Ranaivoson, F.M.' 10 ? primary 'Comoletti, D.' 11 0000-0003-2081-6376 primary 'Savas, J.N.' 12 ? primary 'Remaut, H.' 13 ? primary 'Balschun, D.' 14 0000-0003-0065-0188 primary 'Wierda, K.D.' 15 0000-0002-8784-9490 primary 'Slutsky, I.' 16 0000-0002-0700-2266 primary 'Farrow, K.' 17 0000-0003-1409-096X primary 'De Strooper, B.' 18 ? primary 'de Wit, J.' 19 0000-0003-1120-1089 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Gamma-aminobutyric acid type B receptor subunit 1' _entity.formula_weight 8519.714 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name Gb1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPTSEGCQIIHPPWEGGIRYRGLTRDQVKAINFLPVDYEIEYVCRGEREVVGPKVRKCLANGSWTDMDTPSRCVR _entity_poly.pdbx_seq_one_letter_code_can GPTSEGCQIIHPPWEGGIRYRGLTRDQVKAINFLPVDYEIEYVCRGEREVVGPKVRKCLANGSWTDMDTPSRCVR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 THR n 1 4 SER n 1 5 GLU n 1 6 GLY n 1 7 CYS n 1 8 GLN n 1 9 ILE n 1 10 ILE n 1 11 HIS n 1 12 PRO n 1 13 PRO n 1 14 TRP n 1 15 GLU n 1 16 GLY n 1 17 GLY n 1 18 ILE n 1 19 ARG n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 LEU n 1 24 THR n 1 25 ARG n 1 26 ASP n 1 27 GLN n 1 28 VAL n 1 29 LYS n 1 30 ALA n 1 31 ILE n 1 32 ASN n 1 33 PHE n 1 34 LEU n 1 35 PRO n 1 36 VAL n 1 37 ASP n 1 38 TYR n 1 39 GLU n 1 40 ILE n 1 41 GLU n 1 42 TYR n 1 43 VAL n 1 44 CYS n 1 45 ARG n 1 46 GLY n 1 47 GLU n 1 48 ARG n 1 49 GLU n 1 50 VAL n 1 51 VAL n 1 52 GLY n 1 53 PRO n 1 54 LYS n 1 55 VAL n 1 56 ARG n 1 57 LYS n 1 58 CYS n 1 59 LEU n 1 60 ALA n 1 61 ASN n 1 62 GLY n 1 63 SER n 1 64 TRP n 1 65 THR n 1 66 ASP n 1 67 MET n 1 68 ASP n 1 69 THR n 1 70 PRO n 1 71 SER n 1 72 ARG n 1 73 CYS n 1 74 VAL n 1 75 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 75 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GABBR1, GPRC3A' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GABR1_HUMAN _struct_ref.pdbx_db_accession Q9UBS5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TSEGCQIIHPPWEGGIRYRGLTRDQVKAINFLPVDYEIEYVCRGEREVVGPKVRKCLANGSWTDMDTPSRCVR _struct_ref.pdbx_align_begin 26 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6HKC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UBS5 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 98 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 75 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6HKC GLY A 1 ? UNP Q9UBS5 ? ? 'expression tag' 1 1 1 6HKC PRO A 2 ? UNP Q9UBS5 ? ? 'expression tag' 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D HNCACB' 1 isotropic 3 1 1 '3D HN(COCA)CB' 1 isotropic 4 1 1 '3D HNCO' 1 isotropic 5 1 1 '3D HN(CA)CO' 1 isotropic 6 1 1 '3D HBHA(CO)NH' 1 isotropic 9 1 1 '3D C(CO)NH' 1 isotropic 8 1 1 '3D HCCH-TOCSY' 1 isotropic 7 1 1 '2D 1H-13C HSQC' 1 isotropic 10 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 11 1 1 '3D 1H-15N NOESY' 1 isotropic 12 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 13 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 14 1 1 '2D (HB)CB(CGCD)HD' 1 isotropic 15 1 1 '2D (HB)CB(CGCDCE)HE' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'condition 1' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1 mM [U-100% 13C; U-100% 15N] sushi 1, 3 mM APP 9mer, 50 mM potassium phosphate, 50 mM sodium chloride, 0.01 % sodium azide, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'sample 1' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6HKC _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 8 # _pdbx_nmr_ensemble.entry_id 6HKC _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6HKC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 4 'peak picking' 'CcpNmr Analysis' ? CCPN 5 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 6 'data analysis' 'CcpNmr Analysis' ? CCPN 7 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 8 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6HKC _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6HKC _struct.title 'Solution structure of the Sushi 1 domain of GABAbR1a' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6HKC _struct_keywords.text 'neurotransmitter receptor, G protein coupled receptors, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 58 SG ? ? A CYS 7 A CYS 58 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 73 SG ? ? A CYS 44 A CYS 73 1_555 ? ? ? ? ? ? ? 2.032 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 16 ? ARG A 19 ? GLY A 16 ARG A 19 AA1 2 GLU A 39 ? CYS A 44 ? GLU A 39 CYS A 44 AA1 3 ARG A 56 ? LYS A 57 ? ARG A 56 LYS A 57 AA2 1 VAL A 50 ? VAL A 51 ? VAL A 50 VAL A 51 AA2 2 ARG A 72 ? CYS A 73 ? ARG A 72 CYS A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 19 ? N ARG A 19 O GLU A 41 ? O GLU A 41 AA1 2 3 N ILE A 40 ? N ILE A 40 O ARG A 56 ? O ARG A 56 AA2 1 2 N VAL A 51 ? N VAL A 51 O ARG A 72 ? O ARG A 72 # _atom_sites.entry_id 6HKC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ARG 75 75 75 ARG ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-23 2 'Structure model' 1 1 2019-05-08 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_nmr_software 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_nmr_software.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sushi 1' 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'APP 9mer' 3 ? mM 'natural abundance' 1 'potassium phosphate' 50 ? mM 'natural abundance' 1 'sodium chloride' 50 ? mM 'natural abundance' 1 'sodium azide' 0.01 ? % 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HG A LEU 23 ? ? HH A TYR 38 ? ? 1.21 2 8 HG A LEU 23 ? ? HH A TYR 38 ? ? 1.22 3 9 OE1 A GLU 41 ? ? HZ2 A LYS 54 ? ? 1.57 4 9 OE1 A GLU 39 ? ? HZ2 A LYS 57 ? ? 1.58 5 15 OE1 A GLU 41 ? ? HZ1 A LYS 54 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 13 ? ? -76.51 -80.00 2 1 GLU A 15 ? ? -58.71 100.54 3 1 ARG A 21 ? ? -109.72 -86.58 4 1 ASP A 26 ? ? 68.50 -27.03 5 1 GLN A 27 ? ? -90.33 -146.07 6 1 VAL A 28 ? ? 54.26 19.75 7 1 LYS A 29 ? ? -101.41 -74.85 8 1 ASN A 32 ? ? -74.39 -70.20 9 1 ASP A 37 ? ? 61.97 75.81 10 1 THR A 65 ? ? -49.89 -75.40 11 1 ASP A 68 ? ? -172.65 96.73 12 2 PRO A 2 ? ? -68.23 93.08 13 2 PRO A 13 ? ? -66.75 -85.01 14 2 GLU A 15 ? ? -50.67 100.90 15 2 ASP A 26 ? ? 56.17 12.77 16 2 GLN A 27 ? ? -124.47 -162.69 17 2 VAL A 28 ? ? 56.92 13.83 18 2 ASP A 37 ? ? 167.20 -27.51 19 2 GLU A 47 ? ? -155.11 49.07 20 2 ASP A 68 ? ? -168.82 89.16 21 3 ASP A 26 ? ? 92.91 3.96 22 3 VAL A 28 ? ? 52.36 18.78 23 3 ALA A 30 ? ? -168.03 107.81 24 3 ASP A 68 ? ? -170.61 89.18 25 4 GLU A 15 ? ? -65.54 92.47 26 4 ARG A 21 ? ? -103.40 -65.71 27 4 ARG A 25 ? ? -64.77 -173.05 28 4 ASP A 26 ? ? 68.63 -45.74 29 4 GLN A 27 ? ? -76.42 -155.92 30 4 VAL A 28 ? ? 49.31 27.51 31 4 ASP A 37 ? ? 80.16 -4.00 32 4 ASP A 68 ? ? -169.88 89.29 33 5 PRO A 2 ? ? -68.29 92.86 34 5 PRO A 13 ? ? -78.23 -146.22 35 5 GLU A 15 ? ? -44.20 101.31 36 5 ALA A 30 ? ? -151.07 89.01 37 5 ASP A 66 ? ? -157.93 74.88 38 5 ASP A 68 ? ? -167.96 88.95 39 6 PRO A 13 ? ? -76.88 -132.04 40 6 GLU A 15 ? ? -43.95 101.05 41 6 ARG A 25 ? ? -60.70 -172.08 42 6 ASP A 26 ? ? 69.40 -35.86 43 6 VAL A 28 ? ? 59.45 11.88 44 6 ALA A 30 ? ? -166.13 91.16 45 6 SER A 63 ? ? -174.19 149.09 46 6 ASP A 68 ? ? -170.26 89.05 47 6 THR A 69 ? ? -160.29 107.88 48 7 PRO A 2 ? ? -78.96 33.55 49 7 PRO A 13 ? ? -88.07 -150.22 50 7 TRP A 14 ? ? -63.48 -177.59 51 7 GLU A 15 ? ? -38.82 100.33 52 7 ASP A 26 ? ? 67.38 -42.79 53 7 VAL A 28 ? ? 57.90 9.38 54 7 VAL A 36 ? ? -67.30 84.59 55 7 ASP A 37 ? ? 165.59 -30.92 56 7 ASP A 68 ? ? -166.65 87.60 57 7 PRO A 70 ? ? -66.68 97.60 58 8 PRO A 13 ? ? -76.38 -84.03 59 8 GLU A 15 ? ? -47.68 102.31 60 8 ASP A 26 ? ? 67.32 -44.50 61 8 GLN A 27 ? ? -68.03 -163.62 62 8 ALA A 30 ? ? -154.65 89.68 63 8 ASP A 68 ? ? -169.31 89.67 64 9 PRO A 13 ? ? -91.19 -94.73 65 9 ARG A 25 ? ? -67.40 -174.99 66 9 ASP A 26 ? ? 65.64 -34.26 67 9 VAL A 28 ? ? 52.89 18.50 68 9 ALA A 30 ? ? -141.74 16.03 69 9 ASP A 37 ? ? 78.75 -11.96 70 9 THR A 65 ? ? -57.73 -73.18 71 9 ASP A 68 ? ? -168.34 89.79 72 10 PRO A 2 ? ? -66.34 95.29 73 10 PRO A 13 ? ? -73.21 -160.05 74 10 TRP A 14 ? ? -68.80 -175.94 75 10 GLU A 15 ? ? -37.86 100.53 76 10 ARG A 21 ? ? -106.43 -75.86 77 10 ASP A 26 ? ? 69.27 -2.27 78 10 GLN A 27 ? ? -119.98 -156.51 79 10 VAL A 28 ? ? 47.83 27.57 80 10 ALA A 30 ? ? -160.60 81.54 81 10 ASP A 37 ? ? 172.94 -27.78 82 10 ASP A 68 ? ? -167.08 87.85 83 10 THR A 69 ? ? -160.33 109.00 84 10 VAL A 74 ? ? -127.14 -95.64 85 11 PRO A 13 ? ? -88.79 -145.18 86 11 TRP A 14 ? ? -68.36 -179.67 87 11 GLU A 15 ? ? -47.99 101.50 88 11 ASP A 26 ? ? 73.24 -40.77 89 11 ALA A 30 ? ? -165.95 35.97 90 11 ASP A 37 ? ? 77.12 -3.85 91 11 GLU A 47 ? ? -91.56 37.51 92 11 ASP A 66 ? ? -159.03 42.96 93 11 ASP A 68 ? ? -170.32 88.97 94 12 PRO A 13 ? ? -77.76 -129.80 95 12 GLU A 15 ? ? -68.91 76.37 96 12 ARG A 25 ? ? -69.30 -173.07 97 12 ASP A 26 ? ? 69.79 -40.33 98 12 VAL A 28 ? ? 54.73 10.00 99 12 VAL A 36 ? ? -69.84 82.07 100 12 ASP A 37 ? ? 172.44 -26.39 101 12 ASP A 68 ? ? -168.94 88.39 102 12 PRO A 70 ? ? -66.95 92.81 103 13 PRO A 2 ? ? -80.34 44.82 104 13 PRO A 13 ? ? -80.52 -101.40 105 13 GLU A 15 ? ? -54.84 101.21 106 13 ARG A 25 ? ? -68.78 -175.89 107 13 ASP A 26 ? ? 62.64 -26.83 108 13 ALA A 30 ? ? -165.99 102.65 109 13 ASP A 37 ? ? 82.48 -28.93 110 13 GLU A 47 ? ? -146.83 47.52 111 13 MET A 67 ? ? -119.54 74.38 112 13 ASP A 68 ? ? -170.68 89.20 113 13 PRO A 70 ? ? -92.56 46.48 114 14 PRO A 13 ? ? -86.68 -138.74 115 14 TRP A 14 ? ? -66.85 -177.50 116 14 GLU A 15 ? ? -39.88 101.35 117 14 VAL A 28 ? ? 54.40 9.22 118 14 ALA A 30 ? ? -156.31 81.15 119 14 VAL A 36 ? ? -65.22 86.14 120 14 ASP A 37 ? ? 168.94 -26.84 121 14 ASP A 68 ? ? -168.03 88.45 122 14 VAL A 74 ? ? 177.04 151.76 123 15 PRO A 13 ? ? -69.09 -159.05 124 15 GLU A 15 ? ? -39.42 100.90 125 15 ARG A 21 ? ? -91.39 -72.20 126 15 VAL A 28 ? ? 53.59 15.00 127 15 ALA A 30 ? ? -159.47 86.96 128 15 VAL A 36 ? ? -68.19 85.72 129 15 ASP A 37 ? ? 175.32 -39.46 130 15 PRO A 53 ? ? -82.28 42.22 131 15 MET A 67 ? ? -100.69 76.25 132 15 ASP A 68 ? ? -171.76 89.89 133 16 PRO A 2 ? ? -84.83 30.95 134 16 PRO A 12 ? ? -57.86 109.99 135 16 ARG A 25 ? ? -67.80 -172.75 136 16 ASP A 26 ? ? 68.09 -42.79 137 16 VAL A 28 ? ? 57.45 9.88 138 16 ALA A 30 ? ? -161.90 94.53 139 16 VAL A 36 ? ? -64.55 83.87 140 16 ASP A 37 ? ? 168.45 -33.46 141 16 ASP A 68 ? ? -168.60 88.85 142 17 PRO A 13 ? ? -74.87 -87.60 143 17 GLU A 15 ? ? -39.81 101.93 144 17 TYR A 20 ? ? -110.76 -168.03 145 17 ARG A 25 ? ? -61.94 -173.51 146 17 ASP A 26 ? ? 65.06 -46.14 147 17 GLN A 27 ? ? -68.96 -169.76 148 17 VAL A 28 ? ? 55.61 15.66 149 17 ALA A 30 ? ? -161.21 117.48 150 17 ASN A 32 ? ? -105.07 -65.09 151 17 VAL A 36 ? ? -62.63 94.93 152 17 ASP A 37 ? ? 173.85 -43.41 153 17 ARG A 45 ? ? -59.72 108.61 154 17 ASP A 68 ? ? -170.83 88.63 155 18 PRO A 13 ? ? -87.50 -149.02 156 18 GLU A 15 ? ? -46.03 100.59 157 18 ARG A 25 ? ? -66.88 -173.43 158 18 ASP A 26 ? ? 59.07 19.24 159 18 VAL A 28 ? ? 49.44 24.01 160 18 ALA A 30 ? ? -166.42 101.07 161 18 THR A 65 ? ? -75.62 33.03 162 18 ASP A 66 ? ? -160.75 13.91 163 18 ASP A 68 ? ? -169.68 88.88 164 19 PRO A 2 ? ? -69.60 92.90 165 19 PRO A 13 ? ? -87.60 -140.10 166 19 TRP A 14 ? ? -67.54 -179.44 167 19 GLU A 15 ? ? -43.20 102.38 168 19 ASP A 26 ? ? 72.77 -38.90 169 19 VAL A 28 ? ? 55.60 9.54 170 19 LYS A 54 ? ? -69.03 91.34 171 19 THR A 65 ? ? -77.23 38.23 172 19 ASP A 66 ? ? -162.51 20.16 173 19 ASP A 68 ? ? -169.76 89.27 174 20 PRO A 13 ? ? -88.85 -74.96 175 20 ARG A 25 ? ? -66.55 -172.63 176 20 ASP A 26 ? ? 70.24 -38.67 177 20 GLN A 27 ? ? -94.73 -153.25 178 20 VAL A 28 ? ? 57.80 13.16 179 20 VAL A 36 ? ? -61.48 94.92 180 20 ASP A 37 ? ? 160.92 -29.90 181 20 ALA A 60 ? ? -78.47 36.98 182 20 ASP A 68 ? ? -168.48 87.93 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Research Foundation - Flanders' Belgium Odyssey 1 'European Research Council' Belgium 311083 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #