HEADER TRANSFERASE 07-SEP-18 6HKM TITLE CRYSTAL STRUCTURE OF COMPOUND 1 WITH ERK5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: MAPK 7,BIG MAP KINASE 1,BMK-1,EXTRACELLULAR SIGNAL-REGULATED COMPND 6 KINASE 5,ERK-5; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK7, BMK1, ERK5, PRKM7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ERK5 KINASE, IMMUNE SYSTEM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NGUYEN,C.LEMOS,L.WORTMANN,K.EIS,S.J.HOLTON,U.BOEMER,C.LECHNER, AUTHOR 2 S.PRECHTL,D.SUELZE,F.SIEGEL,F.PRINZ,R.LESCHE,B.NICKE,D.MUMBERG, AUTHOR 3 M.BAUSER,A.HAEGEBARTH REVDAT 2 15-MAY-24 6HKM 1 REMARK REVDAT 1 27-FEB-19 6HKM 0 JRNL AUTH D.NGUYEN,C.LEMOS,L.WORTMANN,K.EIS,S.J.HOLTON,U.BOEMER, JRNL AUTH 2 D.MOOSMAYER,U.EBERSPAECHER,J.WEISKE,C.LECHNER,S.PRECHTL, JRNL AUTH 3 D.SUELZLE,F.SIEGEL,F.PRINZ,R.LESCHE,B.NICKE,K.NOWAK-REPPEL, JRNL AUTH 4 H.HIMMEL,D.MUMBERG,F.VON NUSSBAUM,C.F.NISING,M.BAUSER, JRNL AUTH 5 A.HAEGEBARTH JRNL TITL DISCOVERY AND CHARACTERIZATION OF THE POTENT AND HIGHLY JRNL TITL 2 SELECTIVE (PIPERIDIN-4-YL)PYRIDO[3,2- D]PYRIMIDINE BASED IN JRNL TITL 3 VITRO PROBE BAY-885 FOR THE KINASE ERK5. JRNL REF J. MED. CHEM. V. 62 928 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30563338 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01606 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.394 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2726 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2594 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3703 ; 1.208 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5924 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;33.717 ;22.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;14.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3055 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3060 -36.2080 -12.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.3312 REMARK 3 T33: 0.4152 T12: -0.0736 REMARK 3 T13: -0.1623 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 8.6321 L22: 1.9103 REMARK 3 L33: 2.9574 L12: -2.3690 REMARK 3 L13: -3.4965 L23: 1.9825 REMARK 3 S TENSOR REMARK 3 S11: -0.1716 S12: 0.6602 S13: -1.1036 REMARK 3 S21: -0.1002 S22: -0.0921 S23: 0.5517 REMARK 3 S31: 0.2592 S32: -0.3208 S33: 0.2637 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8580 -32.9630 1.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.4530 REMARK 3 T33: 0.0622 T12: -0.0980 REMARK 3 T13: -0.0080 T23: -0.1482 REMARK 3 L TENSOR REMARK 3 L11: 3.0500 L22: 3.3388 REMARK 3 L33: 6.3280 L12: -0.0703 REMARK 3 L13: -1.6359 L23: 0.6134 REMARK 3 S TENSOR REMARK 3 S11: 0.3320 S12: -0.6869 S13: 0.2233 REMARK 3 S21: 0.4796 S22: 0.0529 S23: -0.0922 REMARK 3 S31: -0.0031 S32: 0.9186 S33: -0.3850 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 365 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2140 -23.7390 -12.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.2948 REMARK 3 T33: 0.0492 T12: 0.0589 REMARK 3 T13: -0.0202 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 8.3372 L22: 5.2580 REMARK 3 L33: 3.8805 L12: 0.0376 REMARK 3 L13: -0.6320 L23: 1.8667 REMARK 3 S TENSOR REMARK 3 S11: 0.2592 S12: 0.5718 S13: 0.1143 REMARK 3 S21: -0.5912 S22: -0.1518 S23: 0.0177 REMARK 3 S31: -0.3308 S32: -0.0989 S33: -0.1073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6HKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999999701977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 70.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 4000, 100MM MGCL2, 160MM REMARK 280 SODIUM FORMATE, 100MM MES PH 6.75, 10MM TRIS PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.22500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.23850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.23850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.11250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.23850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.23850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.33750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.23850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.23850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.11250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.23850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.23850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.33750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 49 REMARK 465 ASP A 50 REMARK 465 VAL A 51 REMARK 465 GLY A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 TYR A 66 REMARK 465 GLY A 67 REMARK 465 ARG A 73 REMARK 465 ARG A 74 REMARK 465 ARG A 75 REMARK 465 LEU A 76 REMARK 465 THR A 77 REMARK 465 GLY A 78 REMARK 465 THR A 124 REMARK 465 PRO A 211 REMARK 465 ALA A 212 REMARK 465 PRO A 303 REMARK 465 ARG A 304 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 54 CG CD OE1 OE2 REMARK 480 GLU A 56 CG CD OE1 OE2 REMARK 480 ILE A 57 CD1 REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 ASN A 63 CG OD1 ND2 REMARK 480 VAL A 68 CG1 CG2 REMARK 480 SER A 70 OG REMARK 480 GLN A 79 CD OE1 NE2 REMARK 480 LYS A 84 NZ REMARK 480 LYS A 110 NZ REMARK 480 LYS A 131 CD CE NZ REMARK 480 MET A 173 CE REMARK 480 GLU A 192 CG CD OE1 OE2 REMARK 480 MET A 218 CE REMARK 480 ARG A 259 CZ NH1 NH2 REMARK 480 LYS A 265 CD CE NZ REMARK 480 LEU A 271 CD1 CD2 REMARK 480 MET A 276 CE REMARK 480 GLU A 292 CD OE1 OE2 REMARK 480 VAL A 294 CG1 CG2 REMARK 480 LEU A 301 CG CD1 CD2 REMARK 480 PRO A 308 CG CD REMARK 480 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 349 NZ REMARK 480 ILE A 395 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 61 -65.65 -101.65 REMARK 500 ASP A 182 29.91 -151.15 REMARK 500 ASP A 200 77.83 56.25 REMARK 500 ALA A 223 -145.41 70.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G92 A 1001 DBREF 6HKM A 49 395 UNP Q13164 MK07_HUMAN 49 395 SEQRES 1 A 347 PHE ASP VAL GLY ASP GLU TYR GLU ILE ILE GLU THR ILE SEQRES 2 A 347 GLY ASN GLY ALA TYR GLY VAL VAL SER SER ALA ARG ARG SEQRES 3 A 347 ARG LEU THR GLY GLN GLN VAL ALA ILE LYS LYS ILE PRO SEQRES 4 A 347 ASN ALA PHE ASP VAL VAL THR ASN ALA LYS ARG THR LEU SEQRES 5 A 347 ARG GLU LEU LYS ILE LEU LYS HIS PHE LYS HIS ASP ASN SEQRES 6 A 347 ILE ILE ALA ILE LYS ASP ILE LEU ARG PRO THR VAL PRO SEQRES 7 A 347 TYR GLY GLU PHE LYS SER VAL TYR VAL VAL LEU ASP LEU SEQRES 8 A 347 MET GLU SER ASP LEU HIS GLN ILE ILE HIS SER SER GLN SEQRES 9 A 347 PRO LEU THR LEU GLU HIS VAL ARG TYR PHE LEU TYR GLN SEQRES 10 A 347 LEU LEU ARG GLY LEU LYS TYR MET HIS SER ALA GLN VAL SEQRES 11 A 347 ILE HIS ARG ASP LEU LYS PRO SER ASN LEU LEU VAL ASN SEQRES 12 A 347 GLU ASN CYS GLU LEU LYS ILE GLY ASP PHE GLY MET ALA SEQRES 13 A 347 ARG GLY LEU CYS THR SER PRO ALA GLU HIS GLN TYR PHE SEQRES 14 A 347 MET THR GLU TYR VAL ALA THR ARG TRP TYR ARG ALA PRO SEQRES 15 A 347 GLU LEU MET LEU SER LEU HIS GLU TYR THR GLN ALA ILE SEQRES 16 A 347 ASP LEU TRP SER VAL GLY CYS ILE PHE GLY GLU MET LEU SEQRES 17 A 347 ALA ARG ARG GLN LEU PHE PRO GLY LYS ASN TYR VAL HIS SEQRES 18 A 347 GLN LEU GLN LEU ILE MET MET VAL LEU GLY THR PRO SER SEQRES 19 A 347 PRO ALA VAL ILE GLN ALA VAL GLY ALA GLU ARG VAL ARG SEQRES 20 A 347 ALA TYR ILE GLN SER LEU PRO PRO ARG GLN PRO VAL PRO SEQRES 21 A 347 TRP GLU THR VAL TYR PRO GLY ALA ASP ARG GLN ALA LEU SEQRES 22 A 347 SER LEU LEU GLY ARG MET LEU ARG PHE GLU PRO SER ALA SEQRES 23 A 347 ARG ILE SER ALA ALA ALA ALA LEU ARG HIS PRO PHE LEU SEQRES 24 A 347 ALA LYS TYR HIS ASP PRO ASP ASP GLU PRO ASP CYS ALA SEQRES 25 A 347 PRO PRO PHE ASP PHE ALA PHE ASP ARG GLU ALA LEU THR SEQRES 26 A 347 ARG GLU ARG ILE LYS GLU ALA ILE VAL ALA GLU ILE GLU SEQRES 27 A 347 ASP PHE HIS ALA ARG ARG GLU GLY ILE HET G92 A1001 33 HETNAM G92 [4-(6,7-DIMETHOXYQUINAZOLIN-4-YL)PIPERIDIN-1-YL]-[4- HETNAM 2 G92 (TRIFLUOROMETHYLOXY)PHENYL]METHANONE FORMUL 2 G92 C23 H22 F3 N3 O4 FORMUL 3 HOH *33(H2 O) HELIX 1 AA1 VAL A 92 PHE A 109 1 18 HELIX 2 AA2 PRO A 126 PHE A 130 5 5 HELIX 3 AA3 LEU A 144 HIS A 149 1 6 HELIX 4 AA4 THR A 155 ALA A 176 1 22 HELIX 5 AA5 LYS A 184 SER A 186 5 3 HELIX 6 AA6 GLU A 213 PHE A 217 5 5 HELIX 7 AA7 MET A 218 VAL A 222 5 5 HELIX 8 AA8 THR A 224 ARG A 228 5 5 HELIX 9 AA9 ALA A 229 SER A 235 1 7 HELIX 10 AB1 GLN A 241 ARG A 258 1 18 HELIX 11 AB2 ASN A 266 GLY A 279 1 14 HELIX 12 AB3 SER A 282 ALA A 288 1 7 HELIX 13 AB4 ALA A 291 LEU A 301 1 11 HELIX 14 AB5 PRO A 308 TYR A 313 1 6 HELIX 15 AB6 ASP A 317 ARG A 326 1 10 HELIX 16 AB7 GLU A 331 ARG A 335 5 5 HELIX 17 AB8 SER A 337 LEU A 342 1 6 HELIX 18 AB9 ARG A 343 ALA A 348 5 6 HELIX 19 AC1 ASP A 352 GLU A 356 5 5 HELIX 20 AC2 PHE A 365 GLU A 370 1 6 HELIX 21 AC3 THR A 373 ARG A 391 1 19 SHEET 1 AA1 5 GLU A 59 GLY A 62 0 SHEET 2 AA1 5 VAL A 69 ALA A 72 -1 O SER A 71 N GLU A 59 SHEET 3 AA1 5 VAL A 81 ILE A 86 -1 O VAL A 81 N ALA A 72 SHEET 4 AA1 5 VAL A 133 LEU A 137 -1 O LEU A 137 N ALA A 82 SHEET 5 AA1 5 ASP A 119 ILE A 120 -1 N ASP A 119 O VAL A 136 SHEET 1 AA2 3 SER A 142 ASP A 143 0 SHEET 2 AA2 3 LEU A 188 VAL A 190 -1 O VAL A 190 N SER A 142 SHEET 3 AA2 3 LEU A 196 ILE A 198 -1 O LYS A 197 N LEU A 189 CISPEP 1 ALA A 360 PRO A 361 0 -3.84 SITE 1 AC1 12 ILE A 61 ALA A 82 LYS A 84 ILE A 86 SITE 2 AC1 12 GLU A 102 LEU A 103 LEU A 106 VAL A 135 SITE 3 AC1 12 ASP A 138 MET A 140 LEU A 189 ASP A 200 CRYST1 92.477 92.477 108.450 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009221 0.00000