HEADER TRANSFERASE 07-SEP-18 6HKN TITLE CRYSTAL STRUCTURE OF COMPOUND 35 WITH ERK5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: MAPK 7,BIG MAP KINASE 1,BMK-1,EXTRACELLULAR SIGNAL-REGULATED COMPND 6 KINASE 5,ERK-5; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK7, BMK1, ERK5, PRKM7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ERK5 KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NGUYEN,C.LEMOS,L.WORTMANN,K.EIS,S.J.HOLTON,U.BOEMER,C.LECHNER, AUTHOR 2 S.PRECHTL,D.SUELZE,F.SIEGEL,F.PRINZ,R.LESCHE,B.NICKE,D.MUMBERG, AUTHOR 3 M.BAUSER,A.HAEGEBARTH REVDAT 1 27-FEB-19 6HKN 0 JRNL AUTH D.NGUYEN,C.LEMOS,L.WORTMANN,K.EIS,S.J.HOLTON,U.BOEMER, JRNL AUTH 2 D.MOOSMAYER,U.EBERSPAECHER,J.WEISKE,C.LECHNER,S.PRECHTL, JRNL AUTH 3 D.SUELZLE,F.SIEGEL,F.PRINZ,R.LESCHE,B.NICKE,K.NOWAK-REPPEL, JRNL AUTH 4 H.HIMMEL,D.MUMBERG,F.VON NUSSBAUM,C.F.NISING,M.BAUSER, JRNL AUTH 5 A.HAEGEBARTH JRNL TITL DISCOVERY AND CHARACTERIZATION OF THE POTENT AND HIGHLY JRNL TITL 2 SELECTIVE (PIPERIDIN-4-YL)PYRIDO[3,2- D]PYRIMIDINE BASED IN JRNL TITL 3 VITRO PROBE BAY-885 FOR THE KINASE ERK5. JRNL REF J. MED. CHEM. V. 62 928 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30563338 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01606 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2701 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.256 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2766 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2643 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3761 ; 1.164 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6041 ; 2.531 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 4.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;34.028 ;22.720 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;13.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3105 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 656 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 117 REMARK 3 RESIDUE RANGE : A 343 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5860 -31.7580 -12.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.2600 REMARK 3 T33: 0.0432 T12: -0.0100 REMARK 3 T13: -0.0448 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 6.4913 L22: 1.1772 REMARK 3 L33: 1.7705 L12: -1.7783 REMARK 3 L13: -1.7806 L23: 0.7917 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.3357 S13: -0.3513 REMARK 3 S21: -0.2642 S22: -0.0910 S23: 0.1925 REMARK 3 S31: 0.0653 S32: -0.2294 S33: 0.0604 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9490 -33.9440 -0.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.2568 REMARK 3 T33: 0.0069 T12: -0.0654 REMARK 3 T13: -0.0037 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.4534 L22: 2.1473 REMARK 3 L33: 3.1497 L12: -0.4858 REMARK 3 L13: -0.5247 L23: 0.7605 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.3035 S13: 0.1075 REMARK 3 S21: 0.2299 S22: 0.0565 S23: -0.0451 REMARK 3 S31: 0.0366 S32: 0.2974 S33: -0.1005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6HKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99982 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 71.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 100MM MGCL2, 180MM REMARK 280 SODIUM FORMATE, 100 MM MES PH 6.5, 10MM TRIS PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.79250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.24400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.24400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.39625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.24400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.24400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.18875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.24400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.24400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.39625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.24400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.24400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.18875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.79250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 62 REMARK 465 ASN A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 75 REMARK 465 LEU A 76 REMARK 465 THR A 77 REMARK 465 GLY A 78 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 54 CD OE1 OE2 REMARK 480 GLU A 56 CG CD OE1 OE2 REMARK 480 ILE A 57 CG1 CG2 CD1 REMARK 480 VAL A 68 CG1 CG2 REMARK 480 SER A 70 OG REMARK 480 ARG A 73 CD NE CZ NH1 NH2 REMARK 480 GLN A 79 CG CD OE1 NE2 REMARK 480 ILE A 83 CD1 REMARK 480 LYS A 85 NZ REMARK 480 LYS A 110 CE NZ REMARK 480 LYS A 118 NZ REMARK 480 THR A 124 OG1 CG2 REMARK 480 GLU A 129 CD OE1 OE2 REMARK 480 LYS A 131 CE NZ REMARK 480 GLN A 146 CD OE1 NE2 REMARK 480 CYS A 208 SG REMARK 480 LYS A 265 CE NZ REMARK 480 GLU A 292 CD OE1 OE2 REMARK 480 LEU A 301 CD1 CD2 REMARK 480 GLN A 305 CD OE1 NE2 REMARK 480 ARG A 318 NE CZ NH1 NH2 REMARK 480 LYS A 349 NZ REMARK 480 ARG A 391 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 58 -73.21 -99.79 REMARK 500 HIS A 149 52.96 -96.27 REMARK 500 LEU A 154 76.35 -153.21 REMARK 500 ARG A 181 -1.17 72.35 REMARK 500 ASP A 182 36.51 -144.47 REMARK 500 ASP A 200 71.23 56.69 REMARK 500 ALA A 223 -147.27 64.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G9E A 1001 DBREF 6HKN A 54 393 UNP Q13164 MK07_HUMAN 54 393 SEQRES 1 A 340 GLU TYR GLU ILE ILE GLU THR ILE GLY ASN GLY ALA TYR SEQRES 2 A 340 GLY VAL VAL SER SER ALA ARG ARG ARG LEU THR GLY GLN SEQRES 3 A 340 GLN VAL ALA ILE LYS LYS ILE PRO ASN ALA PHE ASP VAL SEQRES 4 A 340 VAL THR ASN ALA LYS ARG THR LEU ARG GLU LEU LYS ILE SEQRES 5 A 340 LEU LYS HIS PHE LYS HIS ASP ASN ILE ILE ALA ILE LYS SEQRES 6 A 340 ASP ILE LEU ARG PRO THR VAL PRO TYR GLY GLU PHE LYS SEQRES 7 A 340 SER VAL TYR VAL VAL LEU ASP LEU MET GLU SER ASP LEU SEQRES 8 A 340 HIS GLN ILE ILE HIS SER SER GLN PRO LEU THR LEU GLU SEQRES 9 A 340 HIS VAL ARG TYR PHE LEU TYR GLN LEU LEU ARG GLY LEU SEQRES 10 A 340 LYS TYR MET HIS SER ALA GLN VAL ILE HIS ARG ASP LEU SEQRES 11 A 340 LYS PRO SER ASN LEU LEU VAL ASN GLU ASN CYS GLU LEU SEQRES 12 A 340 LYS ILE GLY ASP PHE GLY MET ALA ARG GLY LEU CYS THR SEQRES 13 A 340 SER PRO ALA GLU HIS GLN TYR PHE MET THR GLU TYR VAL SEQRES 14 A 340 ALA THR ARG TRP TYR ARG ALA PRO GLU LEU MET LEU SER SEQRES 15 A 340 LEU HIS GLU TYR THR GLN ALA ILE ASP LEU TRP SER VAL SEQRES 16 A 340 GLY CYS ILE PHE GLY GLU MET LEU ALA ARG ARG GLN LEU SEQRES 17 A 340 PHE PRO GLY LYS ASN TYR VAL HIS GLN LEU GLN LEU ILE SEQRES 18 A 340 MET MET VAL LEU GLY THR PRO SER PRO ALA VAL ILE GLN SEQRES 19 A 340 ALA VAL GLY ALA GLU ARG VAL ARG ALA TYR ILE GLN SER SEQRES 20 A 340 LEU PRO PRO ARG GLN PRO VAL PRO TRP GLU THR VAL TYR SEQRES 21 A 340 PRO GLY ALA ASP ARG GLN ALA LEU SER LEU LEU GLY ARG SEQRES 22 A 340 MET LEU ARG PHE GLU PRO SER ALA ARG ILE SER ALA ALA SEQRES 23 A 340 ALA ALA LEU ARG HIS PRO PHE LEU ALA LYS TYR HIS ASP SEQRES 24 A 340 PRO ASP ASP GLU PRO ASP CYS ALA PRO PRO PHE ASP PHE SEQRES 25 A 340 ALA PHE ASP ARG GLU ALA LEU THR ARG GLU ARG ILE LYS SEQRES 26 A 340 GLU ALA ILE VAL ALA GLU ILE GLU ASP PHE HIS ALA ARG SEQRES 27 A 340 ARG GLU HET G9E A1001 32 HETNAM G9E [2-AZANYL-4-(TRIFLUOROMETHYLOXY)PHENYL]-[4-(7- HETNAM 2 G9E METHOXYQUINAZOLIN-4-YL)PIPERIDIN-1-YL]METHANONE FORMUL 2 G9E C22 H21 F3 N4 O3 FORMUL 3 HOH *98(H2 O) HELIX 1 AA1 VAL A 92 PHE A 109 1 18 HELIX 2 AA2 PRO A 126 PHE A 130 5 5 HELIX 3 AA3 LEU A 144 HIS A 149 1 6 HELIX 4 AA4 THR A 155 ALA A 176 1 22 HELIX 5 AA5 LYS A 184 SER A 186 5 3 HELIX 6 AA6 ASP A 200 ALA A 204 5 5 HELIX 7 AA7 GLU A 213 PHE A 217 5 5 HELIX 8 AA8 MET A 218 VAL A 222 5 5 HELIX 9 AA9 THR A 224 ARG A 228 5 5 HELIX 10 AB1 ALA A 229 LEU A 234 1 6 HELIX 11 AB2 GLN A 241 ARG A 258 1 18 HELIX 12 AB3 ASN A 266 GLY A 279 1 14 HELIX 13 AB4 SER A 282 VAL A 289 1 8 HELIX 14 AB5 ALA A 291 LEU A 301 1 11 HELIX 15 AB6 PRO A 308 TYR A 313 1 6 HELIX 16 AB7 ASP A 317 ARG A 326 1 10 HELIX 17 AB8 GLU A 331 ARG A 335 5 5 HELIX 18 AB9 SER A 337 ARG A 343 1 7 HELIX 19 AC1 HIS A 344 ALA A 348 5 5 HELIX 20 AC2 ASP A 352 GLU A 356 5 5 HELIX 21 AC3 PHE A 365 GLU A 370 1 6 HELIX 22 AC4 THR A 373 GLU A 393 1 21 SHEET 1 AA1 5 GLU A 56 THR A 60 0 SHEET 2 AA1 5 VAL A 68 ARG A 73 -1 O SER A 71 N ILE A 58 SHEET 3 AA1 5 VAL A 81 ILE A 86 -1 O LYS A 85 N VAL A 68 SHEET 4 AA1 5 VAL A 133 ASP A 138 -1 O LEU A 137 N ALA A 82 SHEET 5 AA1 5 ASP A 119 LEU A 121 -1 N ASP A 119 O VAL A 136 SHEET 1 AA2 3 SER A 142 ASP A 143 0 SHEET 2 AA2 3 LEU A 188 VAL A 190 -1 O VAL A 190 N SER A 142 SHEET 3 AA2 3 LEU A 196 ILE A 198 -1 O LYS A 197 N LEU A 189 CISPEP 1 ALA A 360 PRO A 361 0 3.36 SITE 1 AC1 16 ILE A 61 TYR A 66 ALA A 82 LYS A 84 SITE 2 AC1 16 ILE A 86 THR A 99 GLU A 102 LEU A 103 SITE 3 AC1 16 LEU A 106 VAL A 135 LEU A 137 ASP A 138 SITE 4 AC1 16 MET A 140 LEU A 189 ASP A 200 HOH A1141 CRYST1 92.488 92.488 113.585 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010812 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008804 0.00000