HEADER GENE REGULATION 07-SEP-18 6HKP TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND ASPP2 (970- TITLE 2 992) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: APOPTOSIS-STIMULATING OF P53 PROTEIN 2; COMPND 10 CHAIN: S; COMPND 11 SYNONYM: BCL2-BINDING PROTEIN,BBP,RENAL CARCINOMA ANTIGEN NY-REN-51, COMPND 12 TUMOR SUPPRESSOR P53-BINDING PROTEIN 2,P53BP2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NON-HEME, DIOXYGENASE, OXYGENASE, METAL-BINDING, TRANSCRIPTION, KEYWDS 2 DOUBLE STRANDED BETA-HELIX, DSBH, FACIAL TRIAD, ASPARAGINYL/ASPARTYL KEYWDS 3 HYDROXYLASE, EPIGENETIC REGULATION, SIGNALING, ARD, BETA- KEYWDS 4 HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE COMPLEX, KEYWDS 5 OXIDOREDUCTASE, ANKYRIN REPEAT DOMAIN, APOPTOSIS, P53 BINDING KEYWDS 6 PROTEIN, ANK REPEAT, SH3 DOMAIN, ANKYRIN REPEATS, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,I.J.CLIFTON,X.LU,C.J.SCHOFIELD REVDAT 2 17-JAN-24 6HKP 1 REMARK REVDAT 1 18-SEP-19 6HKP 0 JRNL AUTH T.M.LEISSING,I.J.CLIFTON,X.LU,C.J.SCHOFIELD JRNL TITL FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND JRNL TITL 2 ASPP2 (970-992) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3116 - 4.7868 1.00 2889 146 0.1883 0.2184 REMARK 3 2 4.7868 - 3.7997 1.00 2714 164 0.1332 0.1422 REMARK 3 3 3.7997 - 3.3194 1.00 2694 143 0.1587 0.1740 REMARK 3 4 3.3194 - 3.0159 1.00 2673 149 0.1766 0.1925 REMARK 3 5 3.0159 - 2.7998 1.00 2652 140 0.1769 0.2094 REMARK 3 6 2.7998 - 2.6347 1.00 2644 133 0.1790 0.1950 REMARK 3 7 2.6347 - 2.5028 1.00 2629 148 0.1720 0.2037 REMARK 3 8 2.5028 - 2.3938 1.00 2612 156 0.1690 0.1766 REMARK 3 9 2.3938 - 2.3017 1.00 2625 142 0.1771 0.2140 REMARK 3 10 2.3017 - 2.2222 1.00 2618 141 0.1878 0.2219 REMARK 3 11 2.2222 - 2.1527 1.00 2614 126 0.1974 0.2276 REMARK 3 12 2.1527 - 2.0912 1.00 2625 118 0.2183 0.2699 REMARK 3 13 2.0912 - 2.0362 1.00 2623 133 0.2417 0.2802 REMARK 3 14 2.0362 - 1.9865 1.00 2581 154 0.2565 0.2756 REMARK 3 15 1.9865 - 1.9413 1.00 2610 142 0.2905 0.2720 REMARK 3 16 1.9413 - 1.9000 1.00 2575 135 0.3084 0.3012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2955 REMARK 3 ANGLE : 0.684 4021 REMARK 3 CHIRALITY : 0.048 409 REMARK 3 PLANARITY : 0.005 526 REMARK 3 DIHEDRAL : 12.701 1707 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1101 71.8397 10.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.4438 T22: 0.2293 REMARK 3 T33: 0.3164 T12: 0.0010 REMARK 3 T13: -0.0903 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.6992 L22: 2.6886 REMARK 3 L33: 2.0957 L12: -0.6078 REMARK 3 L13: 0.3611 L23: -1.4012 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0761 S13: -0.0797 REMARK 3 S21: -0.0012 S22: 0.1124 S23: -0.0672 REMARK 3 S31: 0.1303 S32: -0.0728 S33: -0.0961 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4395 93.1751 -4.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.4706 REMARK 3 T33: 0.3877 T12: 0.0510 REMARK 3 T13: -0.0382 T23: 0.0987 REMARK 3 L TENSOR REMARK 3 L11: 2.5702 L22: 5.6219 REMARK 3 L33: 3.0395 L12: -0.5942 REMARK 3 L13: -0.5167 L23: 1.7036 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: 0.2646 S13: 0.0682 REMARK 3 S21: -0.2766 S22: -0.0068 S23: -0.2371 REMARK 3 S31: 0.4481 S32: 0.1494 S33: -0.1468 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'S' AND (RESID 975 THROUGH 987 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6193 72.9590 5.2140 REMARK 3 T TENSOR REMARK 3 T11: 1.0858 T22: 0.9910 REMARK 3 T33: 0.9634 T12: -0.1086 REMARK 3 T13: -0.0072 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.4708 L22: 2.2037 REMARK 3 L33: 1.7106 L12: 0.3256 REMARK 3 L13: 1.4599 L23: -1.1377 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -0.0212 S13: -0.2914 REMARK 3 S21: -0.2252 S22: 0.3655 S23: 0.3105 REMARK 3 S31: 0.2340 S32: -0.0799 S33: -0.3917 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3908 72.8507 22.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.7087 T22: 0.4230 REMARK 3 T33: 0.6850 T12: 0.0134 REMARK 3 T13: -0.2390 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.3589 L22: 0.0570 REMARK 3 L33: 0.0870 L12: -0.0367 REMARK 3 L13: -0.1006 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.2353 S12: -0.4002 S13: 0.0316 REMARK 3 S21: 0.6399 S22: -0.1699 S23: -0.8210 REMARK 3 S31: -0.2376 S32: 0.4171 S33: 0.3398 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8761 63.2756 4.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.6644 T22: 0.3725 REMARK 3 T33: 0.4221 T12: 0.1136 REMARK 3 T13: -0.0302 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 1.8273 L22: 2.4709 REMARK 3 L33: 1.8516 L12: -0.1452 REMARK 3 L13: 0.4116 L23: -1.1398 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: 0.4141 S13: -0.1247 REMARK 3 S21: -0.5444 S22: -0.1314 S23: -0.3367 REMARK 3 S31: 0.3543 S32: 0.3039 S33: 0.0287 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44748 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 86.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.60 REMARK 200 R MERGE FOR SHELL (I) : 1.92300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH = 7.5, 2.0 M AMMONIUM REMARK 280 SULFATE, 5.5% PEG400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.25400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.01000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.12700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.01000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.38100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.12700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.38100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.25400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -263.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -86.02000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 86.02000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY S 970 REMARK 465 HIS S 971 REMARK 465 THR S 972 REMARK 465 GLU S 973 REMARK 465 ILE S 974 REMARK 465 ASP S 989 REMARK 465 SER S 990 REMARK 465 ASP S 991 REMARK 465 GLY S 992 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 SER A 34 OG REMARK 470 LYS A 106 CE NZ REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 119 CG OD1 ND2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 GLN A 133 CD OE1 NE2 REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 298 CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 306 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 LYS A 345 NZ REMARK 470 LYS S 976 CG CD CE NZ REMARK 470 GLN S 980 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 39.45 -142.86 REMARK 500 PHE A 100 76.42 -105.86 REMARK 500 ILE A 210 -51.01 -120.44 REMARK 500 ARG A 238 -7.46 81.03 REMARK 500 TYR A 276 -2.13 78.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 413 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 105.1 REMARK 620 3 HIS A 279 NE2 88.7 86.9 REMARK 620 4 OGA A 412 O1 167.9 86.8 94.6 REMARK 620 5 OGA A 412 O2' 88.8 163.8 102.0 79.1 REMARK 620 6 HOH A 544 O 85.6 84.0 167.6 93.2 88.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 413 DBREF 6HKP A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 6HKP S 970 992 UNP Q13625 ASPP2_HUMAN 976 998 SEQADV 6HKP SER A 0 UNP Q9NWT6 EXPRESSION TAG SEQRES 1 A 350 SER MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SEQRES 2 A 350 SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO SEQRES 3 A 350 ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO SEQRES 4 A 350 THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG SEQRES 5 A 350 ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU SEQRES 6 A 350 THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP SEQRES 7 A 350 LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SEQRES 8 A 350 SER VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR SEQRES 9 A 350 ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO SEQRES 10 A 350 ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL SEQRES 11 A 350 GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU SEQRES 12 A 350 ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY SEQRES 13 A 350 ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN SEQRES 14 A 350 TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN SEQRES 15 A 350 LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN SEQRES 16 A 350 VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE SEQRES 17 A 350 ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO SEQRES 18 A 350 PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS SEQRES 19 A 350 HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN SEQRES 20 A 350 PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL SEQRES 21 A 350 GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR SEQRES 22 A 350 ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU SEQRES 23 A 350 ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS SEQRES 24 A 350 GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS SEQRES 25 A 350 ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS SEQRES 26 A 350 MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY SEQRES 27 A 350 PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 S 23 GLY HIS THR GLU ILE VAL LYS PHE LEU VAL GLN PHE GLY SEQRES 2 S 23 VAL ASN VAL ASN ALA ALA ASP SER ASP GLY HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET GOL A 411 6 HET OGA A 412 10 HET ZN A 413 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM OGA N-OXALYLGLYCINE HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 GOL 5(C3 H8 O3) FORMUL 14 OGA C4 H5 N O5 FORMUL 15 ZN ZN 2+ FORMUL 16 HOH *177(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 ASP A 104 ASN A 110 5 7 HELIX 6 AA6 PHE A 125 GLY A 139 1 15 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 GLY A 178 1 13 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 GLY A 331 1 21 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 SER A 118 LYS A 124 -1 O ASN A 119 N SER A 94 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 413 1555 1555 2.18 LINK OD2 ASP A 201 ZN ZN A 413 1555 1555 1.99 LINK NE2 HIS A 279 ZN ZN A 413 1555 1555 2.13 LINK O1 OGA A 412 ZN ZN A 413 1555 1555 2.26 LINK O2' OGA A 412 ZN ZN A 413 1555 1555 1.95 LINK ZN ZN A 413 O HOH A 544 1555 1555 2.06 CISPEP 1 TYR A 308 PRO A 309 0 20.46 SITE 1 AC1 1 ARG A 120 SITE 1 AC2 2 ARG A 44 HOH A 511 SITE 1 AC3 2 GLN A 148 HOH A 585 SITE 1 AC4 4 LYS A 311 ALA A 312 HOH A 520 HOH A 581 SITE 1 AC5 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC6 5 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC6 5 ASN A 286 SITE 1 AC7 7 LYS A 99 TYR A 230 SER A 240 GLN A 241 SITE 2 AC7 7 VAL A 242 ASP A 243 HOH A 508 SITE 1 AC8 2 ASN A 151 PHE A 162 SITE 1 AC9 1 PHE A 162 SITE 1 AD1 3 ARG A 33 SER A 34 ASP A 245 SITE 1 AD2 2 GLY A 155 ARG A 156 SITE 1 AD3 15 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AD3 15 ASP A 201 ASN A 205 PHE A 207 LYS A 214 SITE 3 AD3 15 HIS A 279 ILE A 281 ASN A 294 TRP A 296 SITE 4 AD3 15 ZN A 413 HOH A 544 HOH A 593 SITE 1 AD4 5 HIS A 199 ASP A 201 HIS A 279 OGA A 412 SITE 2 AD4 5 HOH A 544 CRYST1 86.020 86.020 148.508 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006734 0.00000