HEADER NUCLEAR PROTEIN 10-SEP-18 6HL1 TITLE CRYSTAL STRUCTURE OF FARNESOID X RECEPTOR (FXR) WITH BOUND NCOA-2 TITLE 2 PEPTIDE AND CDCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FARNESOID X-ACTIVATED RECEPTOR,FARNESOL RECEPTOR HRR-1, COMPND 5 NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 4,RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 14,RXR-INTERACTING PROTEIN 14; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: PROTEIN DOMAIN WITH BOUND CDCA; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NCOA-2 PEPTIDE (NUCLEAR RECEPTOR COACTIVATOR 2), LYS-GLU- COMPND 11 ASN-ALA-LEU-LEU-ARG-TYR-LEU-LEU-ASP-LYS-ASP; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H4, BAR, FXR, HRR1, RIP14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ACTIVATOR, DNA-BINDING, RECEPTOR, REPRESSOR, COMPLEX, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,D.MERK,V.L.LINHARD,K.SAXENA,M.SCHUBERT-ZSILAVECZ, AUTHOR 2 H.SCHWALBE REVDAT 3 24-JAN-24 6HL1 1 REMARK REVDAT 2 17-JUL-19 6HL1 1 JRNL REVDAT 1 29-MAY-19 6HL1 0 SPRSDE 29-MAY-19 6HL1 4QE6 JRNL AUTH D.MERK,S.SREERAMULU,D.KUDLINZKI,K.SAXENA,V.LINHARD, JRNL AUTH 2 S.L.GANDE,F.HILLER,C.LAMERS,E.NILSSON,A.AAGAARD,L.WISSLER, JRNL AUTH 3 N.DEKKER,K.BAMBERG,M.SCHUBERT-ZSILAVECZ,H.SCHWALBE JRNL TITL MOLECULAR TUNING OF FARNESOID X RECEPTOR PARTIAL AGONISM. JRNL REF NAT COMMUN V. 10 2915 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31266946 JRNL DOI 10.1038/S41467-019-10853-2 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3259: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 29411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2438 - 3.5549 0.99 2754 145 0.1764 0.2238 REMARK 3 2 3.5549 - 2.8220 1.00 2669 141 0.1969 0.2531 REMARK 3 3 2.8220 - 2.4654 1.00 2693 142 0.1927 0.2468 REMARK 3 4 2.4654 - 2.2400 1.00 2649 139 0.1904 0.1995 REMARK 3 5 2.2400 - 2.0795 1.00 2654 140 0.1988 0.2766 REMARK 3 6 2.0795 - 1.9569 1.00 2658 140 0.2136 0.2584 REMARK 3 7 1.9569 - 1.8589 1.00 2647 139 0.2217 0.2582 REMARK 3 8 1.8589 - 1.7780 1.00 2618 137 0.2405 0.2970 REMARK 3 9 1.7780 - 1.7096 0.96 2548 134 0.2523 0.3216 REMARK 3 10 1.7096 - 1.6506 0.85 2249 119 0.2716 0.3255 REMARK 3 11 1.6506 - 1.5990 0.69 1801 95 0.2986 0.3982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2020 REMARK 3 ANGLE : 0.775 2727 REMARK 3 CHIRALITY : 0.048 306 REMARK 3 PLANARITY : 0.005 351 REMARK 3 DIHEDRAL : 18.218 1244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0266 -26.7512 33.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.1342 REMARK 3 T33: 0.2616 T12: 0.0273 REMARK 3 T13: -0.0050 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.1348 L22: 3.0944 REMARK 3 L33: 4.1738 L12: 1.6280 REMARK 3 L13: -2.0907 L23: 1.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.0828 S13: -0.0428 REMARK 3 S21: 0.0397 S22: 0.0325 S23: 0.0480 REMARK 3 S31: 0.2332 S32: 0.0998 S33: -0.0710 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4365 -23.7022 4.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.4903 T22: 0.4381 REMARK 3 T33: 0.4007 T12: 0.0848 REMARK 3 T13: -0.0002 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 2.8111 L22: 3.6064 REMARK 3 L33: 7.4748 L12: -1.9327 REMARK 3 L13: -0.5307 L23: -0.6011 REMARK 3 S TENSOR REMARK 3 S11: -0.2493 S12: 0.0494 S13: -0.5903 REMARK 3 S21: -0.8590 S22: 0.3453 S23: 0.3286 REMARK 3 S31: 1.5289 S32: 0.6663 S33: -0.2083 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5895 -14.3430 14.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1601 REMARK 3 T33: 0.1573 T12: -0.0052 REMARK 3 T13: -0.0007 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.6044 L22: 0.7908 REMARK 3 L33: 4.8678 L12: -0.0836 REMARK 3 L13: -0.6302 L23: -0.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: 0.2078 S13: -0.1294 REMARK 3 S21: -0.0624 S22: -0.0346 S23: -0.0730 REMARK 3 S31: 0.1233 S32: 0.4787 S33: 0.0912 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0176 -11.1985 19.9855 REMARK 3 T TENSOR REMARK 3 T11: 0.2598 T22: 0.7244 REMARK 3 T33: 0.2606 T12: -0.1346 REMARK 3 T13: -0.0569 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.6230 L22: 7.2246 REMARK 3 L33: 6.8728 L12: 2.1738 REMARK 3 L13: -2.4019 L23: -5.4463 REMARK 3 S TENSOR REMARK 3 S11: -0.1988 S12: 0.1903 S13: -0.0104 REMARK 3 S21: -0.0687 S22: -0.1742 S23: -0.3960 REMARK 3 S31: -0.1973 S32: 1.1634 S33: 0.4686 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3492 -12.8528 27.5172 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1255 REMARK 3 T33: 0.1382 T12: -0.0240 REMARK 3 T13: 0.0061 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 7.4994 L22: 9.0545 REMARK 3 L33: 3.2071 L12: -6.4377 REMARK 3 L13: 0.2751 L23: 0.1915 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: -0.0585 S13: 0.2142 REMARK 3 S21: 0.0511 S22: 0.1439 S23: -0.1435 REMARK 3 S31: -0.0914 S32: 0.0124 S33: -0.0318 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1591 -17.4928 37.0771 REMARK 3 T TENSOR REMARK 3 T11: 0.1847 T22: 0.0807 REMARK 3 T33: 0.1527 T12: -0.0143 REMARK 3 T13: -0.0172 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.2826 L22: 4.0969 REMARK 3 L33: 3.8666 L12: -1.8153 REMARK 3 L13: 2.3287 L23: -2.7240 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: -0.1477 S13: -0.0219 REMARK 3 S21: 0.5043 S22: 0.1222 S23: -0.1500 REMARK 3 S31: -0.1949 S32: -0.0531 S33: 0.0422 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9347 -6.8793 25.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.2690 REMARK 3 T33: 0.3101 T12: -0.1370 REMARK 3 T13: -0.0336 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.1297 L22: 7.4968 REMARK 3 L33: 5.3748 L12: -0.3241 REMARK 3 L13: 0.3175 L23: -6.3828 REMARK 3 S TENSOR REMARK 3 S11: -0.1911 S12: 0.2944 S13: 0.1640 REMARK 3 S21: 0.2813 S22: 0.1256 S23: -0.1978 REMARK 3 S31: -0.7985 S32: 0.4046 S33: 0.0363 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 452 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1968 -4.0130 5.0335 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.2998 REMARK 3 T33: 0.2036 T12: -0.0729 REMARK 3 T13: -0.0184 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 6.6290 L22: 3.4637 REMARK 3 L33: 5.4987 L12: 3.6637 REMARK 3 L13: -2.8633 L23: -1.1787 REMARK 3 S TENSOR REMARK 3 S11: 0.2049 S12: 0.5744 S13: 0.6698 REMARK 3 S21: 0.1854 S22: -0.0373 S23: 0.1141 REMARK 3 S31: -1.0548 S32: 0.2957 S33: -0.2787 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 740 THROUGH 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2032 -10.0912 11.5018 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.4397 REMARK 3 T33: 0.2466 T12: 0.0842 REMARK 3 T13: -0.0270 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 7.0865 L22: 1.9078 REMARK 3 L33: 8.5481 L12: 0.4614 REMARK 3 L13: -0.8396 L23: 0.4365 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: -0.1377 S13: 0.2347 REMARK 3 S21: 0.0939 S22: 0.1331 S23: 0.5084 REMARK 3 S31: -0.5556 S32: -1.2325 S33: 0.0694 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 34.236 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.740 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.58 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QE6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM CA(CH3COO)2, 10 MM DTT, 25-30% REMARK 280 PEG 3350, 100 MM TRIS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.90750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.90750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 241 REMARK 465 LYS A 339 REMARK 465 LEU A 340 REMARK 465 PRO A 341 REMARK 465 SER A 342 REMARK 465 GLY A 343 REMARK 465 HIS A 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 264 -151.50 -143.55 REMARK 500 LEU A 391 57.93 -90.71 REMARK 500 LEU A 391 57.50 -90.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JN3 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QE6 RELATED DB: PDB REMARK 900 IMPROVED PROCESSING DBREF 6HL1 A 244 472 UNP Q96RI1 NR1H4_HUMAN 248 476 DBREF 6HL1 B 740 752 PDB 6HL1 6HL1 740 752 SEQADV 6HL1 SER A 241 UNP Q96RI1 EXPRESSION TAG SEQADV 6HL1 HIS A 242 UNP Q96RI1 EXPRESSION TAG SEQADV 6HL1 MET A 243 UNP Q96RI1 EXPRESSION TAG SEQRES 1 A 232 SER HIS MET GLU LEU THR PRO ASP GLN GLN THR LEU LEU SEQRES 2 A 232 HIS PHE ILE MET ASP SER TYR ASN LYS GLN ARG MET PRO SEQRES 3 A 232 GLN GLU ILE THR ASN LYS ILE LEU LYS GLU GLU PHE SER SEQRES 4 A 232 ALA GLU GLU ASN PHE LEU ILE LEU THR GLU MET ALA THR SEQRES 5 A 232 ASN HIS VAL GLN VAL LEU VAL GLU PHE THR LYS LYS LEU SEQRES 6 A 232 PRO GLY PHE GLN THR LEU ASP HIS GLU ASP GLN ILE ALA SEQRES 7 A 232 LEU LEU LYS GLY SER ALA VAL GLU ALA MET PHE LEU ARG SEQRES 8 A 232 SER ALA GLU ILE PHE ASN LYS LYS LEU PRO SER GLY HIS SEQRES 9 A 232 SER ASP LEU LEU GLU GLU ARG ILE ARG ASN SER GLY ILE SEQRES 10 A 232 SER ASP GLU TYR ILE THR PRO MET PHE SER PHE TYR LYS SEQRES 11 A 232 SER ILE GLY GLU LEU LYS MET THR GLN GLU GLU TYR ALA SEQRES 12 A 232 LEU LEU THR ALA ILE VAL ILE LEU SER PRO ASP ARG GLN SEQRES 13 A 232 TYR ILE LYS ASP ARG GLU ALA VAL GLU LYS LEU GLN GLU SEQRES 14 A 232 PRO LEU LEU ASP VAL LEU GLN LYS LEU CYS LYS ILE HIS SEQRES 15 A 232 GLN PRO GLU ASN PRO GLN HIS PHE ALA CYS LEU LEU GLY SEQRES 16 A 232 ARG LEU THR GLU LEU ARG THR PHE ASN HIS HIS HIS ALA SEQRES 17 A 232 GLU MET LEU MET SER TRP ARG VAL ASN ASP HIS LYS PHE SEQRES 18 A 232 THR PRO LEU LEU CYS GLU ILE TRP ASP VAL GLN SEQRES 1 B 13 LYS GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS ASP HET JN3 A 501 28 HETNAM JN3 CHENODEOXYCHOLIC ACID HETSYN JN3 (3ALPHA,5ALPHA,7BETA,8ALPHA,17ALPHA)-3,7- HETSYN 2 JN3 DIHYDROXYCHOLAN-24-OIC ACID FORMUL 3 JN3 C24 H40 O4 FORMUL 4 HOH *182(H2 O) HELIX 1 AA1 THR A 246 ASN A 261 1 16 HELIX 2 AA2 PRO A 266 GLU A 276 1 11 HELIX 3 AA3 SER A 279 LYS A 304 1 26 HELIX 4 AA4 GLY A 307 LEU A 311 5 5 HELIX 5 AA5 ASP A 312 PHE A 336 1 25 HELIX 6 AA6 ASP A 346 ASN A 354 1 9 HELIX 7 AA7 SER A 358 GLU A 374 1 17 HELIX 8 AA8 THR A 378 LEU A 391 1 14 HELIX 9 AA9 ASP A 400 GLN A 423 1 24 HELIX 10 AB1 GLN A 428 MET A 452 1 25 HELIX 11 AB2 THR A 462 ASP A 470 1 9 HELIX 12 AB3 ASN B 742 LYS B 751 1 10 SITE 1 AC1 12 MET A 265 MET A 290 HIS A 294 MET A 328 SITE 2 AC1 12 PHE A 329 ARG A 331 SER A 332 ILE A 335 SITE 3 AC1 12 TYR A 361 TYR A 369 HIS A 447 HOH A 606 CRYST1 84.444 33.815 83.040 90.00 101.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011842 0.000000 0.002403 0.00000 SCALE2 0.000000 0.029573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012288 0.00000