HEADER GENE REGULATION 10-SEP-18 6HL5 TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND ASPP1(932- TITLE 2 954) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: APOPTOSIS-STIMULATING OF P53 PROTEIN 1; COMPND 10 CHAIN: S; COMPND 11 SYNONYM: PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 13B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NON-HEME, DIOXYGENASE, OXYGENASE, METAL-BINDING, TRANSCRIPTION, KEYWDS 2 DOUBLE STRANDED BETA-HELIX, DSBH, FACIAL TRIAD, ASPARAGINYL/ASPARTYL KEYWDS 3 HYDROXYLASE, EPIGENETIC REGULATION, SIGNALING, ARD, BETA- KEYWDS 4 HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE COMPLEX, KEYWDS 5 OXIDOREDUCTASE, ANKYRIN REPEAT DOMAIN, APOPTOSIS, P53 BINDING KEYWDS 6 PROTEIN, ANK REPEAT, SH3 DOMAIN, ANKYRIN REPEATS, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,R.CHOWDHURY,I.J.CLIFTON,X.LU,C.J.SCHOFIELD REVDAT 2 24-JAN-24 6HL5 1 LINK REVDAT 1 09-OCT-19 6HL5 0 JRNL AUTH T.M.LEISSING,R.CHOWDHURY,I.J.CLIFTON,X.LU,C.J.SCHOFIELD JRNL TITL FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND JRNL TITL 2 ASPP1(932-954) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 39176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3323 - 4.7712 1.00 2883 172 0.1797 0.1829 REMARK 3 2 4.7712 - 3.7873 1.00 2726 151 0.1321 0.1474 REMARK 3 3 3.7873 - 3.3086 1.00 2694 158 0.1613 0.1824 REMARK 3 4 3.3086 - 3.0061 1.00 2682 146 0.1800 0.2271 REMARK 3 5 3.0061 - 2.7907 1.00 2658 133 0.1838 0.2223 REMARK 3 6 2.7907 - 2.6261 1.00 2647 162 0.1871 0.2305 REMARK 3 7 2.6261 - 2.4946 1.00 2646 129 0.1859 0.2024 REMARK 3 8 2.4946 - 2.3860 1.00 2618 154 0.1975 0.2176 REMARK 3 9 2.3860 - 2.2942 1.00 2626 142 0.2162 0.2650 REMARK 3 10 2.2942 - 2.2150 0.99 2594 150 0.2282 0.2789 REMARK 3 11 2.2150 - 2.1457 0.99 2597 151 0.2662 0.2888 REMARK 3 12 2.1457 - 2.0844 0.99 2620 122 0.2915 0.3385 REMARK 3 13 2.0844 - 2.0295 0.98 2592 114 0.3240 0.3671 REMARK 3 14 2.0295 - 1.9800 0.98 2592 117 0.3608 0.3736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2919 REMARK 3 ANGLE : 1.150 3971 REMARK 3 CHIRALITY : 0.070 407 REMARK 3 PLANARITY : 0.008 521 REMARK 3 DIHEDRAL : 12.085 1699 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5463 29.7198 22.4751 REMARK 3 T TENSOR REMARK 3 T11: 0.7380 T22: 0.4334 REMARK 3 T33: 0.6617 T12: 0.0244 REMARK 3 T13: -0.2510 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8888 L22: 2.2154 REMARK 3 L33: 1.1826 L12: -0.9637 REMARK 3 L13: 0.6134 L23: -1.5679 REMARK 3 S TENSOR REMARK 3 S11: -0.2638 S12: -0.2413 S13: 0.0082 REMARK 3 S21: 0.8283 S22: -0.2220 S23: -0.9928 REMARK 3 S31: -0.2552 S32: 0.4469 S33: 0.2907 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2716 16.4086 14.4039 REMARK 3 T TENSOR REMARK 3 T11: 0.5617 T22: 0.2889 REMARK 3 T33: 0.4398 T12: 0.0837 REMARK 3 T13: -0.1472 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 2.0301 L22: 3.8035 REMARK 3 L33: 2.1692 L12: -0.6364 REMARK 3 L13: 0.3833 L23: -1.3882 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.1899 S13: -0.4907 REMARK 3 S21: -0.0996 S22: -0.0592 S23: -0.1119 REMARK 3 S31: 0.5093 S32: 0.0675 S33: -0.0640 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7937 19.5445 -1.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.8995 T22: 0.5385 REMARK 3 T33: 0.4640 T12: 0.1737 REMARK 3 T13: -0.0043 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 1.5614 L22: 3.4756 REMARK 3 L33: 1.5371 L12: -0.7369 REMARK 3 L13: 0.4598 L23: -1.1956 REMARK 3 S TENSOR REMARK 3 S11: 0.2572 S12: 0.6236 S13: -0.1065 REMARK 3 S21: -1.0713 S22: -0.2828 S23: -0.3419 REMARK 3 S31: 0.7247 S32: 0.3246 S33: 0.0307 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2083 30.9451 10.3276 REMARK 3 T TENSOR REMARK 3 T11: 0.4329 T22: 0.2406 REMARK 3 T33: 0.3353 T12: 0.0220 REMARK 3 T13: -0.0825 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.2148 L22: 3.6402 REMARK 3 L33: 2.3941 L12: -0.9935 REMARK 3 L13: 0.7964 L23: -1.8279 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.0620 S13: -0.1303 REMARK 3 S21: 0.0428 S22: 0.1273 S23: -0.0003 REMARK 3 S31: 0.1009 S32: -0.0569 S33: -0.1339 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9015 50.2174 -4.8662 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.4358 REMARK 3 T33: 0.3341 T12: 0.0075 REMARK 3 T13: -0.0384 T23: 0.0995 REMARK 3 L TENSOR REMARK 3 L11: 3.3385 L22: 9.4862 REMARK 3 L33: 4.6374 L12: -2.8005 REMARK 3 L13: -0.7093 L23: 1.0891 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.2862 S13: 0.1477 REMARK 3 S21: -0.4913 S22: 0.0370 S23: 0.0595 REMARK 3 S31: 0.2805 S32: -0.0262 S33: -0.3313 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'S' AND (RESID 938 THROUGH 951 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2753 28.6690 4.5175 REMARK 3 T TENSOR REMARK 3 T11: 0.9383 T22: 0.8942 REMARK 3 T33: 1.1132 T12: -0.2018 REMARK 3 T13: -0.0825 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.4401 L22: 1.4587 REMARK 3 L33: 1.8951 L12: -0.1331 REMARK 3 L13: 0.6793 L23: -1.2756 REMARK 3 S TENSOR REMARK 3 S11: 0.2143 S12: 0.1605 S13: -0.7623 REMARK 3 S21: -0.2203 S22: 0.2137 S23: 0.7836 REMARK 3 S31: 0.2864 S32: -0.4399 S33: -0.3724 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 56.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.90 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : 2.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH = 7.5, 1.2 M AMMONIUM REMARK 280 SULFATE, 4.5% PEG400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.55450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.09900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.09900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.77725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.09900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.09900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.33175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.09900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.09900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.77725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.09900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.09900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.33175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.55450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -213.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -86.19800 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 86.19800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY S 932 REMARK 465 HIS S 933 REMARK 465 HIS S 934 REMARK 465 HIS S 935 REMARK 465 ILE S 936 REMARK 465 VAL S 937 REMARK 465 SER S 952 REMARK 465 ASP S 953 REMARK 465 GLY S 954 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 17 NE CZ NH1 NH2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 83 CD OE1 OE2 REMARK 470 LYS A 106 CE NZ REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 131 CE NZ REMARK 470 GLN A 133 CD OE1 NE2 REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 172 CE NZ REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 GLN A 334 CD OE1 NE2 REMARK 470 ILE A 344 CD1 REMARK 470 LYS S 938 CG CD CE NZ REMARK 470 PHE S 939 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP S 951 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 100 76.55 -106.36 REMARK 500 ASP A 237 131.12 -38.16 REMARK 500 ARG A 238 -8.07 83.28 REMARK 500 TYR A 276 -6.11 71.99 REMARK 500 ASN A 332 119.28 -170.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 102.4 REMARK 620 3 HIS A 279 NE2 91.9 85.8 REMARK 620 4 OGA A 410 O1 171.1 80.7 96.7 REMARK 620 5 OGA A 410 O2' 90.1 161.8 107.2 85.1 REMARK 620 6 HOH A 512 O 83.2 82.2 165.7 89.1 86.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 410 DBREF 6HL5 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 6HL5 S 932 954 UNP Q96KQ4 ASPP1_HUMAN 932 954 SEQADV 6HL5 SER A 0 UNP Q9NWT6 EXPRESSION TAG SEQRES 1 A 350 SER MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SEQRES 2 A 350 SER GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO SEQRES 3 A 350 ALA TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO SEQRES 4 A 350 THR ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG SEQRES 5 A 350 ALA GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU SEQRES 6 A 350 THR ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP SEQRES 7 A 350 LEU GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SEQRES 8 A 350 SER VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR SEQRES 9 A 350 ASP GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO SEQRES 10 A 350 ARG SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL SEQRES 11 A 350 GLU LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU SEQRES 12 A 350 ARG LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY SEQRES 13 A 350 ARG LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN SEQRES 14 A 350 TRP ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN SEQRES 15 A 350 LEU THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN SEQRES 16 A 350 VAL THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE SEQRES 17 A 350 ALA GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO SEQRES 18 A 350 PRO ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS SEQRES 19 A 350 HIS PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN SEQRES 20 A 350 PRO ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL SEQRES 21 A 350 GLY TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR SEQRES 22 A 350 ILE PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU SEQRES 23 A 350 ASN GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS SEQRES 24 A 350 GLY ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS SEQRES 25 A 350 ALA HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS SEQRES 26 A 350 MET LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY SEQRES 27 A 350 PRO LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 S 23 GLY HIS HIS HIS ILE VAL LYS PHE LEU LEU ASP PHE GLY SEQRES 2 S 23 VAL ASN VAL ASN ALA ALA ASP SER ASP GLY HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET ZN A 409 1 HET OGA A 410 10 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM OGA N-OXALYLGLYCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 ZN ZN 2+ FORMUL 12 OGA C4 H5 N O5 FORMUL 13 HOH *139(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 ASN A 110 5 7 HELIX 7 AA7 LYS A 124 ARG A 138 1 15 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 ARG A 177 1 12 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 GLY A 331 1 21 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLY A 260 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 409 1555 1555 2.07 LINK OD2 ASP A 201 ZN ZN A 409 1555 1555 1.94 LINK NE2 HIS A 279 ZN ZN A 409 1555 1555 2.11 LINK ZN ZN A 409 O1 OGA A 410 1555 1555 2.08 LINK ZN ZN A 409 O2' OGA A 410 1555 1555 1.88 LINK ZN ZN A 409 O HOH A 512 1555 1555 2.08 CISPEP 1 TYR A 308 PRO A 309 0 -2.10 SITE 1 AC1 3 ARG A 33 HIS A 98 ARG A 143 SITE 1 AC2 6 LYS A 99 TYR A 230 SER A 240 GLN A 241 SITE 2 AC2 6 ASP A 243 HOH A 580 SITE 1 AC3 2 GLN A 148 THR A 149 SITE 1 AC4 4 LEU A 150 ASN A 151 ASP A 152 PHE A 162 SITE 1 AC5 4 LYS A 311 ALA A 312 HOH A 506 HOH A 605 SITE 1 AC6 5 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC6 5 ASN A 286 SITE 1 AC7 1 ARG A 120 SITE 1 AC8 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC9 5 HIS A 199 ASP A 201 HIS A 279 OGA A 410 SITE 2 AC9 5 HOH A 512 SITE 1 AD1 14 TYR A 145 THR A 196 HIS A 199 ASP A 201 SITE 2 AD1 14 ASN A 205 PHE A 207 LYS A 214 HIS A 279 SITE 3 AD1 14 ILE A 281 ASN A 294 TRP A 296 ZN A 409 SITE 4 AD1 14 HOH A 512 HOH A 531 CRYST1 86.198 86.198 147.109 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011601 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006798 0.00000