HEADER MEMBRANE PROTEIN 11-SEP-18 6HLO TITLE CRYSTAL STRUCTURE OF THE NEUROKININ 1 RECEPTOR IN COMPLEX WITH THE TITLE 2 SMALL MOLECULE ANTAGONIST APREPITANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBSTANCE-P RECEPTOR,GLGA GLYCOGEN SYNTHASE,SUBSTANCE-P COMPND 3 RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SPR,NK-1 RECEPTOR,NK-1R,TACHYKININ RECEPTOR 1,GLYCOGEN COMPND 6 SYNTHASE,SPR,NK-1 RECEPTOR,NK-1R,TACHYKININ RECEPTOR 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 272844; SOURCE 5 GENE: TACR1, NK1R, TAC1R, PAB2292; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS 7-TM; GPCR; SIGNALLING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SCHOPPE,J.EHRENMANN,C.KLENK,P.RUCKTOOA,M.SCHUTZ,A.S.DORE, AUTHOR 2 A.PLUCKTHUN REVDAT 2 24-JAN-24 6HLO 1 LINK REVDAT 1 16-JAN-19 6HLO 0 JRNL AUTH J.SCHOPPE,J.EHRENMANN,C.KLENK,P.RUCKTOOA,M.SCHUTZ,A.S.DORE, JRNL AUTH 2 A.PLUCKTHUN JRNL TITL CRYSTAL STRUCTURES OF THE HUMAN NEUROKININ 1 RECEPTOR IN JRNL TITL 2 COMPLEX WITH CLINICALLY USED ANTAGONISTS. JRNL REF NAT COMMUN V. 10 17 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30604743 JRNL DOI 10.1038/S41467-018-07939-8 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4439 - 5.4838 1.00 2704 141 0.1966 0.2086 REMARK 3 2 5.4838 - 4.3572 1.00 2554 169 0.1809 0.1853 REMARK 3 3 4.3572 - 3.8077 1.00 2534 141 0.1816 0.2213 REMARK 3 4 3.8077 - 3.4602 1.00 2508 145 0.1930 0.2061 REMARK 3 5 3.4602 - 3.2125 1.00 2519 146 0.2058 0.2559 REMARK 3 6 3.2125 - 3.0233 1.00 2505 139 0.2107 0.2454 REMARK 3 7 3.0233 - 2.8720 1.00 2497 126 0.2200 0.2995 REMARK 3 8 2.8720 - 2.7471 1.00 2499 122 0.2213 0.2923 REMARK 3 9 2.7471 - 2.6414 1.00 2495 127 0.2232 0.2913 REMARK 3 10 2.6414 - 2.5503 1.00 2470 132 0.2347 0.3046 REMARK 3 11 2.5503 - 2.4706 1.00 2495 136 0.2538 0.3084 REMARK 3 12 2.4706 - 2.4000 1.00 2463 132 0.2832 0.3595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4228 REMARK 3 ANGLE : 0.578 5652 REMARK 3 CHIRALITY : 0.044 614 REMARK 3 PLANARITY : 0.005 684 REMARK 3 DIHEDRAL : 13.405 2510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 4.0027 -11.0178 58.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.4715 T22: 0.4783 REMARK 3 T33: 0.5428 T12: 0.0162 REMARK 3 T13: 0.0015 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 0.4562 L22: 1.2796 REMARK 3 L33: 3.2033 L12: -0.1691 REMARK 3 L13: 0.3962 L23: -1.7452 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: -0.0371 S13: 0.0089 REMARK 3 S21: 0.0060 S22: 0.0138 S23: 0.0592 REMARK 3 S31: 0.0326 S32: 0.1057 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZJC REMARK 200 REMARK 200 REMARK: STAR-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 6.0, 31% REMARK 280 (V/V) PEG400, 50-70 MM MGCL2 AND 50 UM APREPITANT, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.09450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.56200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.56200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.09450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 ASN A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 ASN A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 ASN A 23 REMARK 465 GLN A 24 REMARK 465 PHE A 25 REMARK 465 VAL A 26 REMARK 465 GLN A 27 REMARK 465 LEU A 279 REMARK 465 LYS A 280 REMARK 465 LYS A 281 REMARK 465 PHE A 325 REMARK 465 ILE A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 TYR A 331 REMARK 465 GLU A 332 REMARK 465 GLY A 333 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 278 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 282 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 CIT A 1502 O HOH A 1601 2.15 REMARK 500 O2 CIT A 1502 O HOH A 1602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1610 O HOH A 1616 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A1413 CA - C - N ANGL. DEV. = -18.3 DEGREES REMARK 500 SER A1413 O - C - N ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 46.92 -84.81 REMARK 500 TYR A 205 -72.28 -135.54 REMARK 500 GLN A1262 -80.41 -126.95 REMARK 500 PRO A1335 44.79 -88.06 REMARK 500 ASN A 274 106.94 -165.00 REMARK 500 PRO A 275 -70.30 -53.03 REMARK 500 ASP A 276 -126.15 56.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 1504 REMARK 610 OLA A 1506 REMARK 610 OLA A 1507 REMARK 610 OLA A 1508 REMARK 610 OLA A 1509 REMARK 610 OLA A 1510 REMARK 610 OLA A 1511 REMARK 610 OLA A 1512 REMARK 610 OLA A 1513 REMARK 610 OLA A 1514 REMARK 610 OLA A 1516 REMARK 610 OLA A 1517 REMARK 610 OLA A 1518 REMARK 610 OLA A 1519 REMARK 610 OLC A 1520 REMARK 610 OLC A 1521 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GBQ A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1521 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1522 DBREF 6HLO A 1 1219 UNP P25103 NK1R_HUMAN 1 228 DBREF 6HLO A 1220 1413 UNP Q9V2J8 Q9V2J8_PYRAB 220 413 DBREF 6HLO A 238 335 UNP P25103 NK1R_HUMAN 238 335 SEQADV 6HLO ALA A 74 UNP P25103 LEU 74 ENGINEERED MUTATION SEQADV 6HLO ILE A 116 UNP P25103 VAL 116 ENGINEERED MUTATION SEQADV 6HLO LEU A 144 UNP P25103 ALA 144 ENGINEERED MUTATION SEQADV 6HLO LYS A 181 UNP P25103 MET 181 ENGINEERED MUTATION SEQADV 6HLO LEU A 215 UNP P25103 ALA 215 ENGINEERED MUTATION SEQADV 6HLO ARG A 224 UNP P25103 TRP 224 ENGINEERED MUTATION SEQADV 6HLO GLY A 1218 UNP P25103 GLU 227 CONFLICT SEQADV 6HLO ALA A 243 UNP P25103 LYS 243 ENGINEERED MUTATION SEQRES 1 A 520 MET ASP ASN VAL LEU PRO VAL ASP SER ASP LEU SER PRO SEQRES 2 A 520 ASN ILE SER THR ASN THR SER GLU PRO ASN GLN PHE VAL SEQRES 3 A 520 GLN PRO ALA TRP GLN ILE VAL LEU TRP ALA ALA ALA TYR SEQRES 4 A 520 THR VAL ILE VAL VAL THR SER VAL VAL GLY ASN VAL VAL SEQRES 5 A 520 VAL MET TRP ILE ILE LEU ALA HIS LYS ARG MET ARG THR SEQRES 6 A 520 VAL THR ASN TYR PHE LEU VAL ASN ALA ALA PHE ALA GLU SEQRES 7 A 520 ALA SER MET ALA ALA PHE ASN THR VAL VAL ASN PHE THR SEQRES 8 A 520 TYR ALA VAL HIS ASN GLU TRP TYR TYR GLY LEU PHE TYR SEQRES 9 A 520 CYS LYS PHE HIS ASN PHE PHE PRO ILE ALA ALA ILE PHE SEQRES 10 A 520 ALA SER ILE TYR SER MET THR ALA VAL ALA PHE ASP ARG SEQRES 11 A 520 TYR MET ALA ILE ILE HIS PRO LEU GLN PRO ARG LEU SER SEQRES 12 A 520 LEU THR ALA THR LYS VAL VAL ILE CYS VAL ILE TRP VAL SEQRES 13 A 520 LEU ALA LEU LEU LEU ALA PHE PRO GLN GLY TYR TYR SER SEQRES 14 A 520 THR THR GLU THR MET PRO SER ARG VAL VAL CYS LYS ILE SEQRES 15 A 520 GLU TRP PRO GLU HIS PRO ASN LYS ILE TYR GLU LYS VAL SEQRES 16 A 520 TYR HIS ILE CYS VAL THR VAL LEU ILE TYR PHE LEU PRO SEQRES 17 A 520 LEU LEU VAL ILE GLY TYR LEU TYR THR VAL VAL GLY ILE SEQRES 18 A 520 THR LEU ARG ALA SER GLY ILE ASP YCM SER PHE TRP ASN SEQRES 19 A 520 GLU SER TYR LEU THR GLY SER ARG ASP GLU ARG LYS LYS SEQRES 20 A 520 SER LEU LEU SER LYS PHE GLY MET ASP GLU GLY VAL THR SEQRES 21 A 520 PHE MET PHE ILE GLY ARG PHE ASP ARG GLY GLN LYS GLY SEQRES 22 A 520 VAL ASP VAL LEU LEU LYS ALA ILE GLU ILE LEU SER SER SEQRES 23 A 520 LYS LYS GLU PHE GLN GLU MET ARG PHE ILE ILE ILE GLY SEQRES 24 A 520 LYS GLY ASP PRO GLU LEU GLU GLY TRP ALA ARG SER LEU SEQRES 25 A 520 GLU GLU LYS HIS GLY ASN VAL LYS VAL ILE THR GLU MET SEQRES 26 A 520 LEU SER ARG GLU PHE VAL ARG GLU LEU TYR GLY SER VAL SEQRES 27 A 520 ASP PHE VAL ILE ILE PRO SER TYR PHE GLU PRO PHE GLY SEQRES 28 A 520 LEU VAL ALA LEU GLU ALA MET CYS LEU GLY ALA ILE PRO SEQRES 29 A 520 ILE ALA SER ALA VAL GLY GLY LEU ARG ASP ILE ILE THR SEQRES 30 A 520 ASN GLU THR GLY ILE LEU VAL LYS ALA GLY ASP PRO GLY SEQRES 31 A 520 GLU LEU ALA ASN ALA ILE LEU LYS ALA LEU GLU LEU SER SEQRES 32 A 520 ARG SER ASP LEU SER LYS PHE ARG GLU ASN CYS LYS LYS SEQRES 33 A 520 ARG ALA MET SER PHE SER GLU GLN VAL SER ALA ALA ARG SEQRES 34 A 520 LYS VAL VAL LYS MET MET ILE VAL VAL VAL CYS THR PHE SEQRES 35 A 520 ALA ILE CYS TRP LEU PRO PHE HIS ILE PHE PHE LEU LEU SEQRES 36 A 520 PRO TYR ILE ASN PRO ASP LEU TYR LEU LYS LYS PHE ILE SEQRES 37 A 520 GLN GLN VAL TYR LEU ALA ILE MET TRP LEU ALA MET SER SEQRES 38 A 520 SER THR MET TYR ASN PRO ILE ILE TYR CYS CYS LEU ASN SEQRES 39 A 520 ASP ARG PHE ARG LEU GLY PHE LYS HIS ALA PHE ARG YCM SEQRES 40 A 520 CYS PRO PHE ILE SER ALA GLY ASP TYR GLU GLY LEU GLU MODRES 6HLO YCM A 1221 CYS MODIFIED RESIDUE MODRES 6HLO YCM A 322 CYS MODIFIED RESIDUE HET YCM A1221 10 HET YCM A 322 10 HET GBQ A1501 37 HET CIT A1502 13 HET OLA A1503 20 HET OLA A1504 14 HET OLA A1505 20 HET OLA A1506 10 HET OLA A1507 8 HET OLA A1508 9 HET OLA A1509 11 HET OLA A1510 11 HET OLA A1511 13 HET OLA A1512 13 HET OLA A1513 9 HET OLA A1514 9 HET OLA A1515 20 HET OLA A1516 11 HET OLA A1517 16 HET OLA A1518 11 HET OLA A1519 10 HET OLC A1520 15 HET OLC A1521 10 HET OLC A1522 25 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM GBQ 5-[[(2~{R},3~{S})-2-[(1~{R})-1-[3,5- HETNAM 2 GBQ BIS(TRIFLUOROMETHYL)PHENYL]ETHOXY]-3-(4-FLUOROPHENYL) HETNAM 3 GBQ MORPHOLIN-4-YL]METHYL]-1,2-DIHYDRO-1,2,4-TRIAZOL-3-ONE HETNAM CIT CITRIC ACID HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 YCM 2(C5 H10 N2 O3 S) FORMUL 2 GBQ C23 H21 F7 N4 O3 FORMUL 3 CIT C6 H8 O7 FORMUL 4 OLA 17(C18 H34 O2) FORMUL 21 OLC 3(C21 H40 O4) FORMUL 24 HOH *74(H2 O) HELIX 1 AA1 PRO A 28 ALA A 59 1 32 HELIX 2 AA2 HIS A 60 ARG A 64 5 5 HELIX 3 AA3 THR A 65 HIS A 95 1 31 HELIX 4 AA4 GLY A 101 HIS A 136 1 36 HELIX 5 AA5 SER A 143 TYR A 168 1 26 HELIX 6 AA6 LYS A 190 TYR A 205 1 16 HELIX 7 AA7 TYR A 205 SER A 226 1 22 HELIX 8 AA8 ASN A 1225 LEU A 1229 5 5 HELIX 9 AA9 SER A 1232 PHE A 1244 1 13 HELIX 10 AB1 GLY A 1264 SER A 1276 1 13 HELIX 11 AB2 SER A 1277 GLN A 1282 5 6 HELIX 12 AB3 ASP A 1293 HIS A 1307 1 15 HELIX 13 AB4 SER A 1318 GLY A 1327 1 10 HELIX 14 AB5 GLY A 1342 LEU A 1351 1 10 HELIX 15 AB6 VAL A 1360 ILE A 1367 1 8 HELIX 16 AB7 ASP A 1379 SER A 1394 1 16 HELIX 17 AB8 LEU A 1398 ASN A 274 1 53 HELIX 18 AB9 ILE A 283 SER A 297 1 15 HELIX 19 AC1 MET A 299 ASN A 309 1 11 HELIX 20 AC2 ASN A 309 PHE A 320 1 12 SHEET 1 AA1 2 SER A 169 THR A 173 0 SHEET 2 AA1 2 VAL A 178 ILE A 182 -1 O LYS A 181 N THR A 170 SHEET 1 AA2 6 VAL A1310 ILE A1313 0 SHEET 2 AA2 6 MET A1284 ILE A1289 1 N ILE A1288 O LYS A1311 SHEET 3 AA2 6 VAL A1250 ILE A1255 1 N PHE A1252 O ARG A1285 SHEET 4 AA2 6 PHE A1331 ILE A1334 1 O ILE A1333 N MET A1253 SHEET 5 AA2 6 ILE A1354 SER A1358 1 O ILE A1356 N ILE A1334 SHEET 6 AA2 6 ILE A1373 VAL A1375 1 O ILE A1373 N PRO A1355 SSBOND 1 CYS A 105 CYS A 180 1555 1555 2.04 LINK C ARG A 321 N YCM A 322 1555 1555 1.33 LINK C YCM A 322 N CYS A 323 1555 1555 1.33 LINK C ASP A1220 N YCM A1221 1555 1555 1.33 LINK C YCM A1221 N SER A1222 1555 1555 1.33 CISPEP 1 MET A 174 PRO A 175 0 -8.56 SITE 1 AC1 18 ASN A 89 ASN A 109 PRO A 112 ILE A 113 SITE 2 AC1 18 ILE A 116 GLN A 165 ILE A 182 TRP A 184 SITE 3 AC1 18 GLU A 193 HIS A 197 VAL A 200 THR A 201 SITE 4 AC1 18 ILE A 204 TRP A 261 PHE A 264 HIS A 265 SITE 5 AC1 18 MET A 291 MET A 295 SITE 1 AC2 9 GLY A 101 LEU A 102 PHE A 103 ARG A 224 SITE 2 AC2 9 OLA A1506 HOH A1601 HOH A1602 HOH A1603 SITE 3 AC2 9 HOH A1611 SITE 1 AC3 2 PHE A 110 TYR A 167 SITE 1 AC4 7 GLY A 213 TYR A 216 THR A 217 ARG A 224 SITE 2 AC4 7 OLA A1505 OLA A1506 OLC A1520 SITE 1 AC5 8 VAL A 88 THR A 91 TYR A 100 ARG A 224 SITE 2 AC5 8 OLA A1504 OLA A1508 OLC A1521 OLC A1522 SITE 1 AC6 6 TYR A 100 TYR A 104 CIT A1502 OLA A1504 SITE 2 AC6 6 OLC A1520 OLC A1521 SITE 1 AC7 2 TYR A 214 OLA A1508 SITE 1 AC8 3 THR A 222 OLA A1505 OLA A1507 SITE 1 AC9 3 LEU A 58 ARG A 64 ASN A 274 SITE 1 AD1 1 ILE A 266 SITE 1 AD2 3 GLN A 31 LEU A 34 TRP A 35 SITE 1 AD3 1 TYR A 121 SITE 1 AD4 2 TYR A 131 TYR A 214 SITE 1 AD5 3 LYS A 248 THR A 256 TYR A 300 SITE 1 AD6 5 VAL A 44 THR A 45 VAL A 48 GLY A 49 SITE 2 AD6 5 PHE A 316 SITE 1 AD7 5 TYR A 69 VAL A 72 ASN A 73 LYS A 148 SITE 2 AD7 5 TRP A 155 SITE 1 AD8 4 TRP A 55 HIS A 318 ARG A 321 OLA A1519 SITE 1 AD9 3 PHE A 320 OLA A1518 OLC A1522 SITE 1 AE1 6 GLY A 220 ARG A 224 ARG A 244 OLA A1504 SITE 2 AE1 6 OLA A1506 HOH A1601 SITE 1 AE2 6 PHE A 103 TYR A 104 PHE A 107 OLA A1505 SITE 2 AE2 6 OLA A1506 OLC A1522 SITE 1 AE3 5 ALA A 83 TYR A 104 OLA A1505 OLA A1519 SITE 2 AE3 5 OLC A1521 CRYST1 62.189 76.450 167.124 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005984 0.00000