HEADER HYDROLASE 12-SEP-18 6HMG
TITLE STRUCTURE OF THE GH99 ENDO-ALPHA-MANNANASE FROM BACTEROIDES
TITLE 2 XYLANISOLVENS IN COMPLEX WITH ALPHA-GLC-1,3-(1,2-ANHYDRO-CARBA-
TITLE 3 GLUCOSAMINE)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 71;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES XYLANISOLVENS XB1A;
SOURCE 3 ORGANISM_TAXID: 657309;
SOURCE 4 GENE: BXY_34140;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A (+)
KEYWDS HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.F.SOBALA,D.LU,S.ZHU,G.BERNARDO-SEISDEDOS,O.MILLET,Y.ZHANG,
AUTHOR 2 M.SOLLOGOUB,J.JIMENEZ-BARBERO,G.J.DAVIES
REVDAT 7 24-JAN-24 6HMG 1 REMARK
REVDAT 6 10-FEB-21 6HMG 1 HETSYN
REVDAT 5 29-JUL-20 6HMG 1 COMPND REMARK HETNAM LINK
REVDAT 5 2 1 SITE
REVDAT 4 24-APR-19 6HMG 1 JRNL
REVDAT 3 19-DEC-18 6HMG 1 REMARK LINK ATOM
REVDAT 2 28-NOV-18 6HMG 1 JRNL
REVDAT 1 26-SEP-18 6HMG 0
JRNL AUTH D.LU,S.ZHU,L.F.SOBALA,G.BERNARDO-SEISDEDOS,O.MILLET,Y.ZHANG,
JRNL AUTH 2 J.JIMENEZ-BARBERO,G.J.DAVIES,M.SOLLOGOUB
JRNL TITL FROM 1,4-DISACCHARIDE TO 1,3-GLYCOSYL CARBASUGAR: SYNTHESIS
JRNL TITL 2 OF A BESPOKE INHIBITOR OF FAMILY GH99
JRNL TITL 3 ENDO-ALPHA-MANNOSIDASE.
JRNL REF ORG.LETT. V. 20 7488 2018
JRNL REFN ISSN 1523-7060
JRNL PMID 30427198
JRNL DOI 10.1021/ACS.ORGLETT.8B03260
REMARK 2
REMARK 2 RESOLUTION. 1.27 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0232
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 98601
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.133
REMARK 3 R VALUE (WORKING SET) : 0.132
REMARK 3 FREE R VALUE : 0.154
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 5172
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.27
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.30
REMARK 3 REFLECTION IN BIN (WORKING SET) : 7234
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84
REMARK 3 BIN R VALUE (WORKING SET) : 0.2890
REMARK 3 BIN FREE R VALUE SET COUNT : 355
REMARK 3 BIN FREE R VALUE : 0.2840
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2809
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 26
REMARK 3 SOLVENT ATOMS : 342
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 14.00
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.84000
REMARK 3 B22 (A**2) : -0.84000
REMARK 3 B33 (A**2) : 1.69000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.039
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.698
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3295 ; 0.009 ; 0.013
REMARK 3 BOND LENGTHS OTHERS (A): 2876 ; 0.002 ; 0.017
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4572 ; 1.585 ; 1.667
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6738 ; 1.515 ; 1.575
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 8.845 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;32.822 ;21.809
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;12.339 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.892 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.092 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3826 ; 0.010 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 1.435 ; 1.804
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1539 ; 1.434 ; 1.802
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1951 ; 1.826 ; 2.718
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1952 ; 1.826 ; 2.720
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 1.959 ; 1.927
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1754 ; 1.956 ; 1.927
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2575 ; 2.241 ; 2.838
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3895 ; 2.792 ;21.274
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3823 ; 2.631 ;20.747
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6171 ; 1.774 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): 222 ;23.555 ; 5.000
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6145 ;13.646 ; 5.000
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 6HMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-18.
REMARK 100 THE DEPOSITION ID IS D_1200011894.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-AUG-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.12
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103773
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270
REMARK 200 RESOLUTION RANGE LOW (A) : 39.500
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.600
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.40
REMARK 200 R MERGE FOR SHELL (I) : 1.29500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: REFMAC 5.8.0124
REMARK 200 STARTING MODEL: 5M17
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.03
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M SODIUM ACETATE PH 7.0, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -Y,X,Z
REMARK 290 4555 Y,-X,Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2
REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.38600
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.38600
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.85150
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.38600
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.38600
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.85150
REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.38600
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.38600
REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.85150
REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.38600
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.38600
REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.85150
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 440 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 685 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -4
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 SER A -1
REMARK 465 HIS A 0
REMARK 465 HIS A 1
REMARK 465 HIS A 2
REMARK 465 HIS A 3
REMARK 465 HIS A 4
REMARK 465 HIS A 5
REMARK 465 SER A 6
REMARK 465 SER A 7
REMARK 465 GLY A 8
REMARK 465 LEU A 9
REMARK 465 VAL A 10
REMARK 465 PRO A 11
REMARK 465 ARG A 12
REMARK 465 GLY A 13
REMARK 465 SER A 14
REMARK 465 HIS A 15
REMARK 465 MET A 16
REMARK 465 ASP A 17
REMARK 465 ASP A 18
REMARK 465 ASN A 19
REMARK 465 ASN A 20
REMARK 465 PRO A 21
REMARK 465 SER A 22
REMARK 465 ASN A 23
REMARK 465 SER A 24
REMARK 465 GLU A 25
REMARK 465 ASN A 26
REMARK 465 ASN A 27
REMARK 465 GLY A 28
REMARK 465 GLY A 29
REMARK 465 ASN A 30
REMARK 465 GLN A 380
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASN A 31 CG OD1 ND2
REMARK 470 GLU A 52 CD OE1 OE2
REMARK 470 ASN A 76 OD1 ND2
REMARK 470 LYS A 108 NZ
REMARK 470 ASP A 130 OD1 OD2
REMARK 470 LYS A 135 NZ
REMARK 470 LYS A 146 CD CE NZ
REMARK 470 LYS A 147 CE NZ
REMARK 470 LYS A 148 CG CD CE NZ
REMARK 470 LYS A 189 NZ
REMARK 470 LYS A 272 NZ
REMARK 470 LYS A 275 CD CE NZ
REMARK 470 LYS A 317 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 58 57.92 -103.28
REMARK 500 HIS A 60 -35.33 72.25
REMARK 500 THR A 231 -74.43 -101.25
REMARK 500 SER A 232 -152.80 -94.57
REMARK 500 TYR A 252 -61.13 61.15
REMARK 500 ASN A 332 44.70 -156.88
REMARK 500 GLU A 357 -118.47 65.41
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLU A 357 ASN A 358 47.69
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 842 DISTANCE = 6.20 ANGSTROMS
DBREF 6HMG A 17 380 UNP D6D1V7 D6D1V7_9BACE 17 380
SEQADV 6HMG MET A -4 UNP D6D1V7 INITIATING METHIONINE
SEQADV 6HMG GLY A -3 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG SER A -2 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG SER A -1 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 0 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 1 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 2 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 3 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 4 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 5 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG SER A 6 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG SER A 7 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG GLY A 8 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG LEU A 9 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG VAL A 10 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG PRO A 11 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG ARG A 12 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG GLY A 13 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG SER A 14 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG HIS A 15 UNP D6D1V7 EXPRESSION TAG
SEQADV 6HMG MET A 16 UNP D6D1V7 EXPRESSION TAG
SEQRES 1 A 385 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 385 LEU VAL PRO ARG GLY SER HIS MET ASP ASP ASN ASN PRO
SEQRES 3 A 385 SER ASN SER GLU ASN ASN GLY GLY ASN ASN ASN LEU GLY
SEQRES 4 A 385 THR GLU LEU ASP TYR ASP THR PHE CYS PHE TYR TYR ASP
SEQRES 5 A 385 TRP TYR GLY SER GLU ALA ILE ASP GLY GLN TYR ARG HIS
SEQRES 6 A 385 TRP ALA HIS ALA ILE ALA PRO ASP PRO ASN GLY GLY SER
SEQRES 7 A 385 GLY GLN ASN PRO GLY THR ILE PRO GLY THR GLN GLU SER
SEQRES 8 A 385 ILE ALA SER ASN PHE TYR PRO GLN LEU GLY ARG TYR SER
SEQRES 9 A 385 SER SER ASP PRO ASN ILE LEU THR LYS HIS MET ASP MET
SEQRES 10 A 385 PHE VAL MET ALA ARG THR GLY VAL LEU ALA LEU THR TRP
SEQRES 11 A 385 TRP ASN GLU GLN ASP GLU THR GLU ALA LYS ARG ILE GLY
SEQRES 12 A 385 LEU ILE LEU ASP ALA ALA ASP LYS LYS LYS ILE LYS VAL
SEQRES 13 A 385 CYS PHE HIS LEU GLU PRO TYR PRO SER ARG ASN VAL GLN
SEQRES 14 A 385 ASN LEU ARG GLU ASN ILE VAL LYS LEU ILE THR ARG TYR
SEQRES 15 A 385 GLY ASN HIS PRO ALA PHE TYR ARG LYS ASP GLY LYS PRO
SEQRES 16 A 385 LEU PHE PHE ILE TYR ASP SER TYR LEU ILE GLU PRO SER
SEQRES 17 A 385 GLU TRP GLU LYS LEU LEU SER PRO GLY GLY SER ILE THR
SEQRES 18 A 385 ILE ARG ASN THR ALA TYR ASP ALA LEU MET ILE GLY LEU
SEQRES 19 A 385 TRP THR SER SER PRO THR VAL GLN ARG PRO PHE ILE LEU
SEQRES 20 A 385 ASN ALA HIS PHE ASP GLY PHE TYR THR TYR PHE ALA ALA
SEQRES 21 A 385 THR GLY PHE THR TYR GLY SER THR PRO THR ASN TRP VAL
SEQRES 22 A 385 SER MET GLN LYS TRP ALA LYS GLU ASN GLY LYS ILE PHE
SEQRES 23 A 385 ILE PRO SER VAL GLY PRO GLY TYR ILE ASP THR ARG ILE
SEQRES 24 A 385 ARG PRO TRP ASN GLY SER VAL ILE ARG THR ARG THR ASP
SEQRES 25 A 385 GLY GLN TYR TYR ASP ALA MET TYR ARG LYS ALA ILE GLU
SEQRES 26 A 385 ALA GLY VAL SER ALA ILE SER ILE THR SER PHE ASN GLU
SEQRES 27 A 385 TRP HIS GLU GLY SER GLN ILE GLU PRO ALA VAL PRO TYR
SEQRES 28 A 385 THR SER SER GLU PHE THR TYR LEU ASP TYR GLU ASN ARG
SEQRES 29 A 385 GLU PRO ASP TYR TYR LEU THR ARG THR ALA TYR TRP VAL
SEQRES 30 A 385 GLY LYS PHE ARG GLU SER LYS GLN
HET ACT A 401 4
HET GDQ A 403 11
HET GLC A 402 11
HETNAM ACT ACETATE ION
HETNAM GDQ (1~{S},2~{R},3~{R},4~{R},6~{S})-4-(HYDROXYMETHYL)-7-
HETNAM 2 GDQ AZABICYCLO[4.1.0]HEPTANE-2,3-DIOL
HETNAM GLC ALPHA-D-GLUCOPYRANOSE
HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE
FORMUL 2 ACT C2 H3 O2 1-
FORMUL 3 GDQ C7 H13 N O3
FORMUL 4 GLC C6 H12 O6
FORMUL 5 HOH *342(H2 O)
HELIX 1 AA1 SER A 51 GLY A 56 1 6
HELIX 2 AA2 ASP A 102 ARG A 117 1 16
HELIX 3 AA3 ASP A 130 LYS A 147 1 18
HELIX 4 AA4 ASN A 162 GLY A 178 1 17
HELIX 5 AA5 ASP A 196 ILE A 200 5 5
HELIX 6 AA6 GLU A 201 SER A 210 1 10
HELIX 7 AA7 SER A 233 HIS A 245 1 13
HELIX 8 AA8 THR A 263 THR A 265 5 3
HELIX 9 AA9 ASN A 266 ASN A 277 1 12
HELIX 10 AB1 ASN A 298 ILE A 302 5 5
HELIX 11 AB2 ARG A 305 ASP A 307 5 3
HELIX 12 AB3 GLY A 308 ALA A 321 1 14
HELIX 13 AB4 ASP A 362 LYS A 379 1 18
SHEET 1 AA1 9 ILE A 280 ILE A 282 0
SHEET 2 AA1 9 GLY A 248 TYR A 250 1 N PHE A 249 O ILE A 282
SHEET 3 AA1 9 LEU A 225 LEU A 229 1 N GLY A 228 O GLY A 248
SHEET 4 AA1 9 LEU A 191 ILE A 194 1 N PHE A 192 O ILE A 227
SHEET 5 AA1 9 LYS A 150 LEU A 155 1 N LEU A 155 O PHE A 193
SHEET 6 AA1 9 THR A 118 TRP A 125 1 N LEU A 121 O LYS A 150
SHEET 7 AA1 9 ASP A 38 TYR A 45 1 N CYS A 43 O VAL A 120
SHEET 8 AA1 9 ILE A 326 ILE A 328 1 O ILE A 328 N PHE A 42
SHEET 9 AA1 9 SER A 284 VAL A 285 1 N VAL A 285 O SER A 327
SHEET 1 AA2 2 ALA A 62 ALA A 64 0
SHEET 2 AA2 2 THR A 79 PRO A 81 -1 O ILE A 80 N HIS A 63
LINK C1 GLC A 402 O3 GDQ A 403 1555 1555 1.46
CISPEP 1 THR A 329 SER A 330 0 11.40
CRYST1 108.772 108.772 67.703 90.00 90.00 90.00 I 4 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009194 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009194 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014770 0.00000