HEADER TRANSFERASE 14-SEP-18 6HND TITLE CRYSTAL STRUCTURE OF THE AROMATIC AMINOTRANSFERASE ARO9 FROM C. TITLE 2 ALBICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC-AMINO-ACID:2-OXOGLUTARATE TRANSAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: ARO9, ORF19.1237, CAALFM_C405560CA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ARO9 FROM C. ALBICANS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KILISZEK,K.RZAD,W.RYPNIEWSKI,S.MILEWSKI,I.GABRIEL REVDAT 3 24-JAN-24 6HND 1 LINK REVDAT 2 27-MAR-19 6HND 1 JRNL REVDAT 1 20-FEB-19 6HND 0 JRNL AUTH A.KILISZEK,W.RYPNIEWSKI,K.RZAD,S.MILEWSKI,I.GABRIEL JRNL TITL CRYSTAL STRUCTURES OF AMINOTRANSFERASES ARO8 AND ARO9 FROM JRNL TITL 2 CANDIDA ALBICANS AND STRUCTURAL INSIGHTS INTO THEIR JRNL TITL 3 PROPERTIES. JRNL REF J.STRUCT.BIOL. V. 205 26 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30742897 JRNL DOI 10.1016/J.JSB.2019.02.001 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.37000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : -2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7797 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7190 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10588 ; 1.517 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16700 ; 1.271 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 929 ; 7.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 407 ;36.004 ;23.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1290 ;16.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;13.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 991 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8611 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1641 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3740 ; 3.162 ; 4.143 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3739 ; 3.160 ; 4.142 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4661 ; 4.489 ; 6.190 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4662 ; 4.489 ; 6.191 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4057 ; 3.875 ; 4.559 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4058 ; 3.874 ; 4.560 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5928 ; 5.821 ; 6.682 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8794 ; 7.395 ;48.333 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8709 ; 7.401 ;48.172 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89429 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JE5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M MGCL2, 0.06 M CACL2, 0.1 M TRIS REMARK 280 (BASE): BICINE PH 8.5, 12.5% V/V MPD, 12.5% PEG 1000, 12.5% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.68850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.95400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.95400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.68850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 19 REMARK 465 PHE A 20 REMARK 465 THR A 21 REMARK 465 ASN A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 SER A 25 REMARK 465 THR A 69 REMARK 465 THR A 70 REMARK 465 PRO A 71 REMARK 465 SER A 72 REMARK 465 THR A 73 REMARK 465 THR A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 THR A 77 REMARK 465 ALA A 78 REMARK 465 GLU A 79 REMARK 465 GLU A 80 REMARK 465 GLU A 81 REMARK 465 PRO A 82 REMARK 465 PRO A 83 REMARK 465 SER A 84 REMARK 465 SER A 85 REMARK 465 SER A 86 REMARK 465 LEU A 87 REMARK 465 ASN A 88 REMARK 465 GLY A 89 REMARK 465 SER A 90 REMARK 465 GLU A 91 REMARK 465 ASN A 92 REMARK 465 GLY A 93 REMARK 465 HIS A 94 REMARK 465 GLN A 95 REMARK 465 THR A 96 REMARK 465 LYS A 97 REMARK 465 THR A 98 REMARK 465 PRO A 99 REMARK 465 PRO A 100 REMARK 465 SER A 101 REMARK 465 SER A 102 REMARK 465 ILE A 103 REMARK 465 HIS A 104 REMARK 465 ILE A 296 REMARK 465 GLY A 297 REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 GLY A 300 REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 ASN A 303 REMARK 465 ASN A 304 REMARK 465 GLU A 305 REMARK 465 LEU A 306 REMARK 465 LYS A 307 REMARK 465 ASN A 308 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 MET B 1 REMARK 465 HIS B 19 REMARK 465 PHE B 20 REMARK 465 THR B 21 REMARK 465 ASN B 22 REMARK 465 ALA B 23 REMARK 465 THR B 69 REMARK 465 THR B 70 REMARK 465 PRO B 71 REMARK 465 SER B 72 REMARK 465 THR B 73 REMARK 465 THR B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 THR B 77 REMARK 465 ALA B 78 REMARK 465 GLU B 79 REMARK 465 GLU B 80 REMARK 465 GLU B 81 REMARK 465 PRO B 82 REMARK 465 PRO B 83 REMARK 465 SER B 84 REMARK 465 SER B 85 REMARK 465 SER B 86 REMARK 465 LEU B 87 REMARK 465 ASN B 88 REMARK 465 GLY B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 ASN B 92 REMARK 465 GLY B 93 REMARK 465 HIS B 94 REMARK 465 GLN B 95 REMARK 465 THR B 96 REMARK 465 LYS B 97 REMARK 465 THR B 98 REMARK 465 PRO B 99 REMARK 465 PRO B 100 REMARK 465 SER B 101 REMARK 465 SER B 102 REMARK 465 ILE B 103 REMARK 465 ILE B 296 REMARK 465 GLY B 297 REMARK 465 GLY B 298 REMARK 465 SER B 299 REMARK 465 GLY B 300 REMARK 465 SER B 301 REMARK 465 GLY B 302 REMARK 465 ASN B 303 REMARK 465 ASN B 304 REMARK 465 GLU B 305 REMARK 465 LEU B 306 REMARK 465 LYS B 307 REMARK 465 ASN B 308 REMARK 465 HIS B 525 REMARK 465 HIS B 526 REMARK 465 HIS B 527 REMARK 465 HIS B 528 REMARK 465 HIS B 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 -169.73 -103.22 REMARK 500 ASN A 31 51.11 -102.40 REMARK 500 SER A 42 -68.58 -95.19 REMARK 500 PHE A 65 -1.11 73.91 REMARK 500 HIS A 151 51.22 -159.44 REMARK 500 ASN A 154 33.05 -95.66 REMARK 500 ASP A 157 42.89 -100.39 REMARK 500 TYR A 283 23.57 -149.89 REMARK 500 PHE A 343 -73.18 -113.84 REMARK 500 ASN A 370 87.71 -159.51 REMARK 500 SER A 374 121.12 -37.62 REMARK 500 SER B 42 -71.48 -90.39 REMARK 500 HIS B 151 51.34 -154.85 REMARK 500 ASN B 154 39.93 -89.44 REMARK 500 ASP B 157 43.74 -96.19 REMARK 500 ILE B 219 135.52 -34.04 REMARK 500 TYR B 283 25.27 -148.23 REMARK 500 LYS B 293 126.99 -39.58 REMARK 500 PHE B 343 -74.97 -122.68 REMARK 500 ASN B 370 87.14 -154.38 REMARK 500 LEU B 521 56.59 76.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD2 REMARK 620 2 ASP A 215 OD1 102.8 REMARK 620 3 ASP A 215 OD2 141.5 41.2 REMARK 620 4 ASP B 213 OD2 76.2 73.5 98.6 REMARK 620 5 ASP B 215 OD1 75.9 70.9 97.1 2.9 REMARK 620 6 ASP B 215 OD2 75.1 70.5 97.2 3.8 1.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 601 and LYS B REMARK 800 341 DBREF1 6HND A 1 523 UNP A0A1D8PMC5_CANAL DBREF2 6HND A A0A1D8PMC5 1 523 DBREF1 6HND B 1 523 UNP A0A1D8PMC5_CANAL DBREF2 6HND B A0A1D8PMC5 1 523 SEQADV 6HND HIS A 524 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS A 525 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS A 526 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS A 527 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS A 528 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS A 529 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS B 524 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS B 525 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS B 526 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS B 527 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS B 528 UNP A0A1D8PMC EXPRESSION TAG SEQADV 6HND HIS B 529 UNP A0A1D8PMC EXPRESSION TAG SEQRES 1 A 529 MET SER ASP PRO THR HIS LEU ILE SER LYS ARG ALA ALA SEQRES 2 A 529 GLY ARG THR SER VAL HIS PHE THR ASN ALA PRO SER ASP SEQRES 3 A 529 LYS PRO PRO ALA ASN PHE LYS PRO HIS GLU LYS PRO LEU SEQRES 4 A 529 ALA LEU SER TYR GLY MET PRO ASN HIS GLY PHE PHE PRO SEQRES 5 A 529 ILE ASP SER ILE ASP VAL ASN LEU VAL ASP TYR PRO PHE SEQRES 6 A 529 GLN LYS ILE THR THR PRO SER THR THR SER SER THR ALA SEQRES 7 A 529 GLU GLU GLU PRO PRO SER SER SER LEU ASN GLY SER GLU SEQRES 8 A 529 ASN GLY HIS GLN THR LYS THR PRO PRO SER SER ILE HIS SEQRES 9 A 529 THR PRO GLN SER THR VAL HIS ILE SER ARG HIS THR THR SEQRES 10 A 529 ASP PRO LYS LEU ILE ASP LEU ALA ARG GLY LEU GLN TYR SEQRES 11 A 529 ALA ALA VAL GLU GLY HIS ALA PRO LEU LEU GLN PHE ALA SEQRES 12 A 529 ARG ASP PHE ILE ILE ARG THR HIS LYS PRO ASN TYR ASP SEQRES 13 A 529 ASP TRP ASN VAL PHE ILE THR THR GLY ALA SER ASP GLY SEQRES 14 A 529 LEU ASN LYS ALA ALA ASP VAL PHE LEU ASP ASP GLY ASP SEQRES 15 A 529 VAL ILE LEU VAL GLU GLU PHE THR PHE SER PRO PHE LEU SEQRES 16 A 529 ARG PHE SER ASP ASN ALA GLY ALA LYS ALA VAL PRO VAL SEQRES 17 A 529 LYS ILE ASN PHE ASP ASN ASP SER ASP GLY ILE ASP LEU SEQRES 18 A 529 THR GLN PHE VAL ASP LEU LEU GLU ASN TRP GLU LYS HIS SEQRES 19 A 529 TYR PRO ASN LEU PRO LYS PRO LYS ALA LEU TYR THR ILE SEQRES 20 A 529 ALA THR GLY GLN ASN PRO THR GLY PHE THR GLN SER LEU SEQRES 21 A 529 GLU PHE ARG LYS LYS ILE TYR ASP LEU ALA VAL LYS TYR SEQRES 22 A 529 ASP PHE ALA ILE ILE GLU ASP ASP PRO TYR GLY TYR LEU SEQRES 23 A 529 THR LEU PRO LYS TYR GLU LYS PRO ASN ILE GLY GLY SER SEQRES 24 A 529 GLY SER GLY ASN ASN GLU LEU LYS ASN ASP LEU GLU ILE SEQRES 25 A 529 ASP ASP TYR LEU LYS ASN HIS LEU THR PRO SER TYR LEU SEQRES 26 A 529 GLU LEU ASP THR THR GLY ARG VAL LEU ARG VAL GLU THR SEQRES 27 A 529 PHE SER LYS LEU PHE ALA PRO GLY LEU ARG LEU GLY PHE SEQRES 28 A 529 ILE VAL GLY HIS LYS GLU VAL ILE ASP ALA VAL LYS ASN SEQRES 29 A 529 TYR SER ASP VAL VAL ASN ARG GLY ALA SER GLY LEU THR SEQRES 30 A 529 GLN THR ILE VAL ASN ASN VAL ILE GLN GLU ASN PHE LYS SEQRES 31 A 529 GLY VAL ASP GLY TRP LEU GLU TRP ILE LEU LYS MET ARG SEQRES 32 A 529 LEU ASN TYR SER TYR ARG LYS ASP LEU LEU LEU TYR SER SEQRES 33 A 529 ILE PHE GLU SER GLN ALA TYR LYS LYS GLY TYR VAL ASP SEQRES 34 A 529 VAL ILE ASP PRO LYS ALA GLY MET PHE VAL THR PHE LYS SEQRES 35 A 529 ILE ASN LEU PRO LYS ASP VAL ASP VAL LEU GLN LYS MET SEQRES 36 A 529 LYS LEU LEU LEU TRP LYS LEU ILE SER TYR GLY ILE LEU SEQRES 37 A 529 VAL VAL PRO GLY TYR ASN MET THR VAL ASP LEU GLU PHE SEQRES 38 A 529 SER LYS ASP ARG SER ASN PHE PHE ARG LEU CYS TYR ALA SEQRES 39 A 529 LEU ALA ASN ASN ASP GLU GLU ILE LEU GLU SER GLY LYS SEQRES 40 A 529 ARG LEU THR ASP ALA VAL TYR GLU PHE PHE SER ASN GLY SEQRES 41 A 529 LEU GLU PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 529 MET SER ASP PRO THR HIS LEU ILE SER LYS ARG ALA ALA SEQRES 2 B 529 GLY ARG THR SER VAL HIS PHE THR ASN ALA PRO SER ASP SEQRES 3 B 529 LYS PRO PRO ALA ASN PHE LYS PRO HIS GLU LYS PRO LEU SEQRES 4 B 529 ALA LEU SER TYR GLY MET PRO ASN HIS GLY PHE PHE PRO SEQRES 5 B 529 ILE ASP SER ILE ASP VAL ASN LEU VAL ASP TYR PRO PHE SEQRES 6 B 529 GLN LYS ILE THR THR PRO SER THR THR SER SER THR ALA SEQRES 7 B 529 GLU GLU GLU PRO PRO SER SER SER LEU ASN GLY SER GLU SEQRES 8 B 529 ASN GLY HIS GLN THR LYS THR PRO PRO SER SER ILE HIS SEQRES 9 B 529 THR PRO GLN SER THR VAL HIS ILE SER ARG HIS THR THR SEQRES 10 B 529 ASP PRO LYS LEU ILE ASP LEU ALA ARG GLY LEU GLN TYR SEQRES 11 B 529 ALA ALA VAL GLU GLY HIS ALA PRO LEU LEU GLN PHE ALA SEQRES 12 B 529 ARG ASP PHE ILE ILE ARG THR HIS LYS PRO ASN TYR ASP SEQRES 13 B 529 ASP TRP ASN VAL PHE ILE THR THR GLY ALA SER ASP GLY SEQRES 14 B 529 LEU ASN LYS ALA ALA ASP VAL PHE LEU ASP ASP GLY ASP SEQRES 15 B 529 VAL ILE LEU VAL GLU GLU PHE THR PHE SER PRO PHE LEU SEQRES 16 B 529 ARG PHE SER ASP ASN ALA GLY ALA LYS ALA VAL PRO VAL SEQRES 17 B 529 LYS ILE ASN PHE ASP ASN ASP SER ASP GLY ILE ASP LEU SEQRES 18 B 529 THR GLN PHE VAL ASP LEU LEU GLU ASN TRP GLU LYS HIS SEQRES 19 B 529 TYR PRO ASN LEU PRO LYS PRO LYS ALA LEU TYR THR ILE SEQRES 20 B 529 ALA THR GLY GLN ASN PRO THR GLY PHE THR GLN SER LEU SEQRES 21 B 529 GLU PHE ARG LYS LYS ILE TYR ASP LEU ALA VAL LYS TYR SEQRES 22 B 529 ASP PHE ALA ILE ILE GLU ASP ASP PRO TYR GLY TYR LEU SEQRES 23 B 529 THR LEU PRO LYS TYR GLU LYS PRO ASN ILE GLY GLY SER SEQRES 24 B 529 GLY SER GLY ASN ASN GLU LEU LYS ASN ASP LEU GLU ILE SEQRES 25 B 529 ASP ASP TYR LEU LYS ASN HIS LEU THR PRO SER TYR LEU SEQRES 26 B 529 GLU LEU ASP THR THR GLY ARG VAL LEU ARG VAL GLU THR SEQRES 27 B 529 PHE SER LYS LEU PHE ALA PRO GLY LEU ARG LEU GLY PHE SEQRES 28 B 529 ILE VAL GLY HIS LYS GLU VAL ILE ASP ALA VAL LYS ASN SEQRES 29 B 529 TYR SER ASP VAL VAL ASN ARG GLY ALA SER GLY LEU THR SEQRES 30 B 529 GLN THR ILE VAL ASN ASN VAL ILE GLN GLU ASN PHE LYS SEQRES 31 B 529 GLY VAL ASP GLY TRP LEU GLU TRP ILE LEU LYS MET ARG SEQRES 32 B 529 LEU ASN TYR SER TYR ARG LYS ASP LEU LEU LEU TYR SER SEQRES 33 B 529 ILE PHE GLU SER GLN ALA TYR LYS LYS GLY TYR VAL ASP SEQRES 34 B 529 VAL ILE ASP PRO LYS ALA GLY MET PHE VAL THR PHE LYS SEQRES 35 B 529 ILE ASN LEU PRO LYS ASP VAL ASP VAL LEU GLN LYS MET SEQRES 36 B 529 LYS LEU LEU LEU TRP LYS LEU ILE SER TYR GLY ILE LEU SEQRES 37 B 529 VAL VAL PRO GLY TYR ASN MET THR VAL ASP LEU GLU PHE SEQRES 38 B 529 SER LYS ASP ARG SER ASN PHE PHE ARG LEU CYS TYR ALA SEQRES 39 B 529 LEU ALA ASN ASN ASP GLU GLU ILE LEU GLU SER GLY LYS SEQRES 40 B 529 ARG LEU THR ASP ALA VAL TYR GLU PHE PHE SER ASN GLY SEQRES 41 B 529 LEU GLU PHE HIS HIS HIS HIS HIS HIS HET PLP A 601 15 HET MPD A 602 8 HET PLP B 601 15 HET MPD B 602 8 HET K B 603 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM K POTASSIUM ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 MPD 2(C6 H14 O2) FORMUL 7 K K 1+ FORMUL 8 HOH *520(H2 O) HELIX 1 AA1 PRO A 4 ILE A 8 5 5 HELIX 2 AA2 SER A 9 ARG A 15 1 7 HELIX 3 AA3 ASN A 47 PHE A 51 5 5 HELIX 4 AA4 ASP A 123 LEU A 128 1 6 HELIX 5 AA5 HIS A 136 LYS A 152 1 17 HELIX 6 AA6 GLY A 165 LEU A 178 1 14 HELIX 7 AA7 SER A 192 ALA A 201 1 10 HELIX 8 AA8 ASP A 220 ASN A 230 1 11 HELIX 9 AA9 ASN A 230 TYR A 235 1 6 HELIX 10 AB1 SER A 259 ASP A 274 1 16 HELIX 11 AB2 GLU A 311 HIS A 319 1 9 HELIX 12 AB3 SER A 323 LEU A 327 5 5 HELIX 13 AB4 ALA A 344 ARG A 348 5 5 HELIX 14 AB5 LYS A 356 ASN A 370 1 15 HELIX 15 AB6 SER A 374 ASN A 388 1 15 HELIX 16 AB7 GLY A 391 GLU A 419 1 29 HELIX 17 AB8 SER A 420 LYS A 425 1 6 HELIX 18 AB9 ASP A 450 TYR A 465 1 16 HELIX 19 AC1 TYR A 473 THR A 476 5 4 HELIX 20 AC2 ASP A 478 LYS A 483 1 6 HELIX 21 AC3 ASP A 484 SER A 486 5 3 HELIX 22 AC4 ASN A 498 ASN A 519 1 22 HELIX 23 AC5 PRO B 4 ILE B 8 5 5 HELIX 24 AC6 SER B 9 ARG B 15 1 7 HELIX 25 AC7 ASN B 47 PHE B 51 5 5 HELIX 26 AC8 ASP B 123 LEU B 128 1 6 HELIX 27 AC9 HIS B 136 LYS B 152 1 17 HELIX 28 AD1 GLY B 165 LEU B 178 1 14 HELIX 29 AD2 SER B 192 ALA B 201 1 10 HELIX 30 AD3 ASP B 220 ASN B 230 1 11 HELIX 31 AD4 ASN B 230 TYR B 235 1 6 HELIX 32 AD5 SER B 259 TYR B 273 1 15 HELIX 33 AD6 GLU B 311 HIS B 319 1 9 HELIX 34 AD7 SER B 323 LEU B 327 5 5 HELIX 35 AD8 ALA B 344 ARG B 348 5 5 HELIX 36 AD9 LYS B 356 ASN B 370 1 15 HELIX 37 AE1 SER B 374 ASN B 388 1 15 HELIX 38 AE2 GLY B 391 GLU B 419 1 29 HELIX 39 AE3 SER B 420 LYS B 425 1 6 HELIX 40 AE4 ASP B 450 GLY B 466 1 17 HELIX 41 AE5 TYR B 473 THR B 476 5 4 HELIX 42 AE6 ASP B 478 LYS B 483 1 6 HELIX 43 AE7 ASP B 484 SER B 486 5 3 HELIX 44 AE8 ASN B 498 ASN B 519 1 22 SHEET 1 AA1 2 LEU A 39 ALA A 40 0 SHEET 2 AA1 2 ILE B 467 LEU B 468 1 O LEU B 468 N LEU A 39 SHEET 1 AA2 4 THR A 109 ILE A 112 0 SHEET 2 AA2 4 ILE A 53 LEU A 60 -1 N ILE A 56 O ILE A 112 SHEET 3 AA2 4 ILE B 53 LEU B 60 -1 O SER B 55 N ASN A 59 SHEET 4 AA2 4 THR B 109 SER B 113 -1 O ILE B 112 N ILE B 56 SHEET 1 AA3 7 TRP A 158 THR A 163 0 SHEET 2 AA3 7 GLY A 350 HIS A 355 -1 O GLY A 354 N ASN A 159 SHEET 3 AA3 7 VAL A 333 THR A 338 -1 N GLU A 337 O PHE A 351 SHEET 4 AA3 7 ALA A 276 ASP A 280 1 N GLU A 279 O VAL A 336 SHEET 5 AA3 7 ALA A 243 THR A 246 1 N LEU A 244 O ILE A 278 SHEET 6 AA3 7 VAL A 183 GLU A 187 1 N LEU A 185 O TYR A 245 SHEET 7 AA3 7 LYS A 204 VAL A 208 1 O VAL A 206 N ILE A 184 SHEET 1 AA4 4 VAL A 428 VAL A 430 0 SHEET 2 AA4 4 PHE A 438 ILE A 443 -1 O LYS A 442 N ASP A 429 SHEET 3 AA4 4 PHE A 488 CYS A 492 -1 O PHE A 489 N PHE A 441 SHEET 4 AA4 4 VAL A 470 PRO A 471 -1 N VAL A 470 O ARG A 490 SHEET 1 AA5 2 ILE A 467 LEU A 468 0 SHEET 2 AA5 2 LEU B 39 ALA B 40 1 O LEU B 39 N LEU A 468 SHEET 1 AA6 7 TRP B 158 THR B 163 0 SHEET 2 AA6 7 GLY B 350 HIS B 355 -1 O GLY B 354 N ASN B 159 SHEET 3 AA6 7 VAL B 333 THR B 338 -1 N GLU B 337 O PHE B 351 SHEET 4 AA6 7 ALA B 276 ASP B 280 1 N GLU B 279 O VAL B 336 SHEET 5 AA6 7 ALA B 243 THR B 246 1 N LEU B 244 O ILE B 278 SHEET 6 AA6 7 VAL B 183 GLU B 187 1 N LEU B 185 O ALA B 243 SHEET 7 AA6 7 LYS B 204 VAL B 208 1 O LYS B 204 N ILE B 184 SHEET 1 AA7 4 VAL B 428 VAL B 430 0 SHEET 2 AA7 4 PHE B 438 ILE B 443 -1 O LYS B 442 N ASP B 429 SHEET 3 AA7 4 PHE B 488 CYS B 492 -1 O PHE B 489 N PHE B 441 SHEET 4 AA7 4 VAL B 470 PRO B 471 -1 N VAL B 470 O ARG B 490 LINK NZ LYS A 341 C4A PLP A 601 1555 1555 1.32 LINK NZ LYS B 341 C4A PLP B 601 1555 1555 1.33 LINK OD2 ASP A 213 K K B 603 1555 2664 2.72 LINK OD1 ASP A 215 K K B 603 1555 2664 2.67 LINK OD2 ASP A 215 K K B 603 1555 2664 3.35 LINK OD2 ASP B 213 K K B 603 1555 1555 2.75 LINK OD1 ASP B 215 K K B 603 1555 1555 2.43 LINK OD2 ASP B 215 K K B 603 1555 1555 3.18 CISPEP 1 ASN A 252 PRO A 253 0 10.78 CISPEP 2 ASN B 252 PRO B 253 0 11.64 SITE 1 AC1 15 GLY A 165 ALA A 166 SER A 167 PHE A 191 SITE 2 AC1 15 ASN A 252 ASP A 280 PRO A 282 TYR A 283 SITE 3 AC1 15 THR A 338 SER A 340 LYS A 341 ARG A 348 SITE 4 AC1 15 HOH A 703 HOH A 844 TYR B 130 SITE 1 AC2 3 HIS B 6 ASP B 274 HOH B 803 SITE 1 AC3 4 ASP A 213 ASP A 215 ASP B 213 ASP B 215 SITE 1 AC4 21 GLY A 44 TYR A 130 GLY B 165 ALA B 166 SITE 2 AC4 21 SER B 167 PHE B 191 ASN B 252 ASP B 280 SITE 3 AC4 21 PRO B 282 TYR B 283 THR B 338 PHE B 339 SITE 4 AC4 21 SER B 340 LEU B 342 PHE B 343 ARG B 348 SITE 5 AC4 21 MET B 402 MET B 437 HOH B 710 HOH B 836 SITE 6 AC4 21 HOH B 874 CRYST1 75.377 89.285 161.908 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006176 0.00000