HEADER TRANSPORT PROTEIN 15-SEP-18 6HNI TITLE THE LIGAND-BOUND, CLOSED STRUCTURE OF CD0873, A SUBSTRATE BINDING TITLE 2 PROTEIN WITH ADHESIVE PROPERTIES FROM CLOSTRIDIUM DIFFICILE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-TYPE TRANSPORT SYSTEM, SUGAR-FAMILY EXTRACELLULAR COMPND 3 SOLUTE-BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE 630; SOURCE 3 ORGANISM_COMMON: CLOSTRIDIUM DIFFICILE; SOURCE 4 ORGANISM_TAXID: 272563; SOURCE 5 GENE: CD630_08730; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SUBSTRATE BINDING PROTEIN, ADHESIN, TYROSINE BINDING PROTEIN, KEYWDS 2 LIPOPROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.J.BRADSHAW,A.KOVACS-SIMON,N.J.HARMER,S.L.MICHELL,K.R.ACHARYA REVDAT 3 24-JAN-24 6HNI 1 REMARK REVDAT 2 06-NOV-19 6HNI 1 JRNL REVDAT 1 28-AUG-19 6HNI 0 JRNL AUTH W.J.BRADSHAW,J.F.BRUXELLE,A.KOVACS-SIMON,N.J.HARMER, JRNL AUTH 2 C.JANOIR,S.PECHINE,K.R.ACHARYA,S.L.MICHELL JRNL TITL MOLECULAR FEATURES OF LIPOPROTEIN CD0873: A POTENTIAL JRNL TITL 2 VACCINE AGAINST THE HUMAN PATHOGENCLOSTRIDIOIDES DIFFICILE. JRNL REF J.BIOL.CHEM. V. 294 15850 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31420448 JRNL DOI 10.1074/JBC.RA119.010120 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 65622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2106 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2345 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2297 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3191 ; 1.802 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5399 ; 1.046 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;42.290 ;27.711 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;11.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ; 2.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2584 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 377 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1216 ; 2.017 ; 1.612 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1215 ; 2.018 ; 1.612 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1525 ; 2.601 ; 2.439 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1526 ; 2.600 ; 2.438 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 2.668 ; 1.991 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1129 ; 2.670 ; 1.990 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1650 ; 3.091 ; 2.817 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2641 ; 3.801 ;21.660 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2567 ; 3.506 ;20.873 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4642 ; 2.659 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 193 ;31.765 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4716 ;14.604 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 55.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : 0.29700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.00 REMARK 200 R MERGE FOR SHELL (I) : 6.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES PH 7.5, 20% (W/V) REMARK 280 PEG 10,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.55350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.17550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.55350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.17550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 799 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 GLN A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 28 REMARK 465 ASP A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 LYS A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 SER A 37 REMARK 465 ASN A 38 REMARK 465 SER A 39 REMARK 465 LYS A 40 REMARK 465 ASP A 41 REMARK 465 LYS A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 339 REMARK 465 GLU A 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 338 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 78 -86.03 -116.52 REMARK 500 SER A 113 159.81 97.71 REMARK 500 ALA A 173 65.15 -151.93 REMARK 500 ASN A 329 108.99 -34.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 805 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 6.48 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 406 DBREF 6HNI A 24 340 UNP Q18A65 Q18A65_PEPD6 24 340 SEQADV 6HNI SER A 22 UNP Q18A65 EXPRESSION TAG SEQADV 6HNI MET A 23 UNP Q18A65 EXPRESSION TAG SEQADV 6HNI ALA A 24 UNP Q18A65 CYS 24 ENGINEERED MUTATION SEQRES 1 A 319 SER MET ALA SER GLN GLY GLY ASP SER GLY ASN SER LYS SEQRES 2 A 319 GLN GLU SER ASN SER LYS ASP LYS GLU VAL LYS LYS ILE SEQRES 3 A 319 GLY ILE THR GLN LEU VAL GLU HIS PRO ALA LEU ASP ALA SEQRES 4 A 319 THR ARG THR GLY PHE VAL LYS ALA LEU GLU LYS ASN GLY SEQRES 5 A 319 PHE LYS ASP GLY GLU ASN ILE ASP ILE ASP PHE GLN ASN SEQRES 6 A 319 ALA GLN ASN ASP MET PRO THR THR GLN SER ILE ALA SER SEQRES 7 A 319 LYS PHE ALA SER ASP LYS LYS ASP LEU ILE PHE ALA ILE SEQRES 8 A 319 SER THR PRO SER ALA GLN ALA ALA PHE ASN ALA THR LYS SEQRES 9 A 319 ASP ILE PRO ILE LEU ILE THR ALA VAL SER ASP PRO VAL SEQRES 10 A 319 ALA ALA GLY LEU VAL LYS THR LEU GLU LYS PRO GLY THR SEQRES 11 A 319 ASN VAL SER GLY THR SER ASP PHE VAL SER VAL ASP LYS SEQRES 12 A 319 GLY LEU GLU LEU LEU LYS ILE PHE ALA PRO LYS ALA LYS SEQRES 13 A 319 THR ILE GLY VAL MET TYR ASN THR SER GLU VAL ASN SER SEQRES 14 A 319 LYS VAL GLN VAL ASP ALA LEU LYS GLU TYR ALA SER LYS SEQRES 15 A 319 ASN GLY PHE LYS VAL VAL GLU LYS GLY ILE THR THR SER SEQRES 16 A 319 ASN GLU VAL ASN GLN GLY ILE SER SER LEU VAL GLY LYS SEQRES 17 A 319 ILE ASP VAL LEU TYR VAL PRO THR ASP ASN LEU VAL ALA SEQRES 18 A 319 SER SER MET PRO ILE VAL SER LYS ILE ALA THR GLU ASN SEQRES 19 A 319 LYS ILE PRO VAL ILE ALA ALA GLU SER GLY PRO VAL GLU SEQRES 20 A 319 LYS GLY ALA LEU ALA CYS GLN GLY ILE ASN TYR GLU LYS SEQRES 21 A 319 LEU GLY TYR LYS THR GLY GLU MET ALA VAL LYS ILE LEU SEQRES 22 A 319 ASN GLY GLU SER VAL SER ASP MET PRO VAL ALA THR SER SEQRES 23 A 319 ASP ASP THR ASP ILE ILE VAL ASN GLU ASP ILE LEU LYS SEQRES 24 A 319 ALA LEU GLY MET GLU LYS PRO SER ASN GLU ASN ILE SER SEQRES 25 A 319 TYR VAL LYS THR LYS GLN GLU HET TYR A 401 13 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET PEG A 406 7 HETNAM TYR TYROSINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 TYR C9 H11 N O3 FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *307(H2 O) HELIX 1 AA1 HIS A 55 ASN A 72 1 18 HELIX 2 AA2 ASP A 90 ASP A 104 1 15 HELIX 3 AA3 SER A 113 THR A 124 1 12 HELIX 4 AA4 SER A 161 GLU A 167 1 7 HELIX 5 AA5 LEU A 168 ALA A 173 1 6 HELIX 6 AA6 GLU A 187 GLY A 205 1 19 HELIX 7 AA7 THR A 215 ASN A 217 5 3 HELIX 8 AA8 GLU A 218 VAL A 227 1 10 HELIX 9 AA9 ASP A 238 SER A 243 1 6 HELIX 10 AB1 SER A 244 ASN A 255 1 12 HELIX 11 AB2 GLU A 263 LYS A 269 1 7 HELIX 12 AB3 ASN A 278 ASN A 295 1 18 HELIX 13 AB4 SER A 298 MET A 302 5 5 HELIX 14 AB5 GLU A 316 LEU A 322 1 7 SHEET 1 AA1 5 ILE A 80 ASN A 86 0 SHEET 2 AA1 5 LYS A 45 GLN A 51 1 N ILE A 47 O ASP A 81 SHEET 3 AA1 5 LEU A 108 ILE A 112 1 O PHE A 110 N GLY A 48 SHEET 4 AA1 5 ILE A 129 VAL A 134 1 O LEU A 130 N ILE A 109 SHEET 5 AA1 5 VAL A 153 SER A 157 1 O SER A 154 N ILE A 131 SHEET 1 AA2 4 LYS A 207 ILE A 213 0 SHEET 2 AA2 4 THR A 178 ASN A 184 1 N ILE A 179 O LYS A 207 SHEET 3 AA2 4 VAL A 232 VAL A 235 1 O VAL A 232 N GLY A 180 SHEET 4 AA2 4 VAL A 259 ALA A 261 1 O ILE A 260 N LEU A 233 SHEET 1 AA3 3 ALA A 273 GLY A 276 0 SHEET 2 AA3 3 ASP A 311 ASN A 315 -1 O ILE A 313 N CYS A 274 SHEET 3 AA3 3 ILE A 332 VAL A 335 1 O VAL A 335 N VAL A 314 SITE 1 AC1 15 HIS A 55 ALA A 57 SER A 113 THR A 114 SITE 2 AC1 15 ALA A 133 VAL A 134 SER A 135 ASP A 158 SITE 3 AC1 15 ASN A 189 THR A 237 ASP A 238 ASN A 239 SITE 4 AC1 15 GLU A 263 TYR A 279 HOH A 722 SITE 1 AC2 2 ARG A 62 PHE A 84 SITE 1 AC3 10 GLY A 276 ILE A 277 ASN A 278 ASP A 309 SITE 2 AC3 10 ASP A 311 ILE A 313 HOH A 508 HOH A 617 SITE 3 AC3 10 HOH A 620 HOH A 651 SITE 1 AC4 4 VAL A 53 GLU A 54 ASN A 86 GLN A 88 SITE 1 AC5 4 PRO A 92 SER A 244 PRO A 246 ILE A 247 SITE 1 AC6 6 ALA A 173 PRO A 174 LYS A 175 ALA A 176 SITE 2 AC6 6 HOH A 513 HOH A 540 CRYST1 131.107 42.351 56.175 90.00 94.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007627 0.000000 0.000636 0.00000 SCALE2 0.000000 0.023612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017863 0.00000