HEADER GENE REGULATION 17-SEP-18 6HON TITLE DROSOPHILA NOT4 CBM PEPTIDE BOUND TO HUMAN CAF40 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CELL DIFFERENTIATION PROTEIN RQCD1 HOMOLOG,RCD-1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FIRST SIX RESIDUES (GPHMLE) REMAIN FROM THE COMPND 7 EXPRESSION TAG.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4, ISOFORM L; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CNOT9, RCD1, RQCD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETMCN(PNEA); SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 15 ORGANISM_COMMON: FRUIT FLY; SOURCE 16 ORGANISM_TAXID: 7227 KEYWDS GENE REGULATION, DEADENYLATION, MRNA DECAY, CCR4-NOT, HYDROLASE, KEYWDS 2 TRANSCRIPTION, UBIQUITINATION EXPDTA X-RAY DIFFRACTION AUTHOR T.RAISCH,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 3 24-JAN-24 6HON 1 LINK REVDAT 2 13-FEB-19 6HON 1 JRNL REVDAT 1 06-FEB-19 6HON 0 JRNL AUTH C.KESKENY,T.RAISCH,A.SGROMO,C.IGREJA,D.BHANDARI, JRNL AUTH 2 O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL A CONSERVED CAF40-BINDING MOTIF IN METAZOAN NOT4 MEDIATES JRNL TITL 2 ASSOCIATION WITH THE CCR4-NOT COMPLEX. JRNL REF GENES DEV. V. 33 236 2019 JRNL REFN ISSN 1549-5477 JRNL PMID 30692204 JRNL DOI 10.1101/GAD.320952.118 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1907 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2832 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2488 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2709 REMARK 3 BIN R VALUE (WORKING SET) : 0.2477 REMARK 3 BIN FREE R VALUE : 0.2755 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.32200 REMARK 3 B22 (A**2) : -20.35230 REMARK 3 B33 (A**2) : 25.67420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.202 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.173 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.177 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4828 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6556 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1714 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 124 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 678 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4828 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 650 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5597 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.39 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.0645 93.8235 210.5200 REMARK 3 T TENSOR REMARK 3 T11: -0.0559 T22: -0.1524 REMARK 3 T33: -0.1843 T12: 0.1320 REMARK 3 T13: 0.0218 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.2093 L22: 0.4747 REMARK 3 L33: 3.4267 L12: 0.1920 REMARK 3 L13: -0.7987 L23: -0.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.2419 S13: 0.2197 REMARK 3 S21: 0.0259 S22: 0.0070 S23: 0.0414 REMARK 3 S31: -0.5592 S32: -0.3431 S33: -0.0506 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.9977 91.5191 219.9650 REMARK 3 T TENSOR REMARK 3 T11: -0.0125 T22: -0.1117 REMARK 3 T33: 0.0013 T12: 0.2085 REMARK 3 T13: 0.1129 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 4.3621 L22: 3.0433 REMARK 3 L33: 0.1201 L12: -2.6806 REMARK 3 L13: -1.7971 L23: 1.8868 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.0322 S13: 0.0305 REMARK 3 S21: 0.0087 S22: -0.0360 S23: 0.2518 REMARK 3 S31: -0.2985 S32: -0.0173 S33: 0.0718 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.2285 74.2339 233.2970 REMARK 3 T TENSOR REMARK 3 T11: -0.1440 T22: 0.0082 REMARK 3 T33: -0.2070 T12: 0.0873 REMARK 3 T13: -0.0403 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.5957 L22: 0.8961 REMARK 3 L33: 2.9673 L12: -0.2529 REMARK 3 L13: -0.0370 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: -0.1370 S13: -0.0911 REMARK 3 S21: 0.0974 S22: -0.0036 S23: -0.1475 REMARK 3 S31: 0.0650 S32: 0.6156 S33: -0.0336 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.6750 62.4487 222.1150 REMARK 3 T TENSOR REMARK 3 T11: -0.1631 T22: 0.1246 REMARK 3 T33: -0.0432 T12: 0.2173 REMARK 3 T13: -0.0123 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 2.8777 L22: 2.3535 REMARK 3 L33: 0.0327 L12: 0.3215 REMARK 3 L13: -1.3294 L23: 0.5414 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.0064 S13: -0.1719 REMARK 3 S21: -0.0713 S22: -0.0570 S23: -0.2837 REMARK 3 S31: 0.1188 S32: 0.1468 S33: 0.1048 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200010656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39129 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.57000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FV2, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M K2HPO4, 0.3 M NAH2PO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.81500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.16000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.49500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.16000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.81500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.49500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 ASP B 813 REMARK 465 GLY C 13 REMARK 465 PRO C 14 REMARK 465 ASP D 813 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 150 64.30 62.44 REMARK 500 SER A 225 103.05 -165.80 REMARK 500 ASN C 78 112.15 -162.65 REMARK 500 ASP C 150 65.15 61.26 REMARK 500 SER C 225 103.68 -166.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 201 OE1 REMARK 620 2 GLN A 201 OE1 0.0 REMARK 620 3 HOH A 420 O 149.9 149.9 REMARK 620 4 HOH A 420 O 94.1 94.1 115.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 901 DBREF 6HON A 19 285 UNP Q92600 CNOT9_HUMAN 19 285 DBREF 6HON B 813 838 UNP M9PCL9 M9PCL9_DROME 813 838 DBREF 6HON C 19 285 UNP Q92600 CNOT9_HUMAN 19 285 DBREF 6HON D 813 838 UNP M9PCL9 M9PCL9_DROME 813 838 SEQADV 6HON GLY A 13 UNP Q92600 EXPRESSION TAG SEQADV 6HON PRO A 14 UNP Q92600 EXPRESSION TAG SEQADV 6HON HIS A 15 UNP Q92600 EXPRESSION TAG SEQADV 6HON MET A 16 UNP Q92600 EXPRESSION TAG SEQADV 6HON LEU A 17 UNP Q92600 EXPRESSION TAG SEQADV 6HON GLU A 18 UNP Q92600 EXPRESSION TAG SEQADV 6HON GLY C 13 UNP Q92600 EXPRESSION TAG SEQADV 6HON PRO C 14 UNP Q92600 EXPRESSION TAG SEQADV 6HON HIS C 15 UNP Q92600 EXPRESSION TAG SEQADV 6HON MET C 16 UNP Q92600 EXPRESSION TAG SEQADV 6HON LEU C 17 UNP Q92600 EXPRESSION TAG SEQADV 6HON GLU C 18 UNP Q92600 EXPRESSION TAG SEQRES 1 A 273 GLY PRO HIS MET LEU GLU ARG GLU LYS ILE TYR GLN TRP SEQRES 2 A 273 ILE ASN GLU LEU SER SER PRO GLU THR ARG GLU ASN ALA SEQRES 3 A 273 LEU LEU GLU LEU SER LYS LYS ARG GLU SER VAL PRO ASP SEQRES 4 A 273 LEU ALA PRO MET LEU TRP HIS SER PHE GLY THR ILE ALA SEQRES 5 A 273 ALA LEU LEU GLN GLU ILE VAL ASN ILE TYR PRO SER ILE SEQRES 6 A 273 ASN PRO PRO THR LEU THR ALA HIS GLN SER ASN ARG VAL SEQRES 7 A 273 CYS ASN ALA LEU ALA LEU LEU GLN CYS VAL ALA SER HIS SEQRES 8 A 273 PRO GLU THR ARG SER ALA PHE LEU ALA ALA HIS ILE PRO SEQRES 9 A 273 LEU PHE LEU TYR PRO PHE LEU HIS THR VAL SER LYS THR SEQRES 10 A 273 ARG PRO PHE GLU TYR LEU ARG LEU THR SER LEU GLY VAL SEQRES 11 A 273 ILE GLY ALA LEU VAL LYS THR ASP GLU GLN GLU VAL ILE SEQRES 12 A 273 ASN PHE LEU LEU THR THR GLU ILE ILE PRO LEU CYS LEU SEQRES 13 A 273 ARG ILE MET GLU SER GLY SER GLU LEU SER LYS THR VAL SEQRES 14 A 273 ALA THR PHE ILE LEU GLN LYS ILE LEU LEU ASP ASP THR SEQRES 15 A 273 GLY LEU ALA TYR ILE CYS GLN THR TYR GLU ARG PHE SER SEQRES 16 A 273 HIS VAL ALA MET ILE LEU GLY LYS MET VAL LEU GLN LEU SEQRES 17 A 273 SER LYS GLU PRO SER ALA ARG LEU LEU LYS HIS VAL VAL SEQRES 18 A 273 ARG CYS TYR LEU ARG LEU SER ASP ASN PRO ARG ALA ARG SEQRES 19 A 273 GLU ALA LEU ARG GLN CYS LEU PRO ASP GLN LEU LYS ASP SEQRES 20 A 273 THR THR PHE ALA GLN VAL LEU LYS ASP ASP THR THR THR SEQRES 21 A 273 LYS ARG TRP LEU ALA GLN LEU VAL LYS ASN LEU GLN GLU SEQRES 1 B 26 ASP ASP ASP LEU GLY PHE ASP PRO PHE VAL GLU THR GLN SEQRES 2 B 26 LYS GLY LEU ALA GLU LEU MET GLU ASN GLU VAL VAL GLN SEQRES 1 C 273 GLY PRO HIS MET LEU GLU ARG GLU LYS ILE TYR GLN TRP SEQRES 2 C 273 ILE ASN GLU LEU SER SER PRO GLU THR ARG GLU ASN ALA SEQRES 3 C 273 LEU LEU GLU LEU SER LYS LYS ARG GLU SER VAL PRO ASP SEQRES 4 C 273 LEU ALA PRO MET LEU TRP HIS SER PHE GLY THR ILE ALA SEQRES 5 C 273 ALA LEU LEU GLN GLU ILE VAL ASN ILE TYR PRO SER ILE SEQRES 6 C 273 ASN PRO PRO THR LEU THR ALA HIS GLN SER ASN ARG VAL SEQRES 7 C 273 CYS ASN ALA LEU ALA LEU LEU GLN CYS VAL ALA SER HIS SEQRES 8 C 273 PRO GLU THR ARG SER ALA PHE LEU ALA ALA HIS ILE PRO SEQRES 9 C 273 LEU PHE LEU TYR PRO PHE LEU HIS THR VAL SER LYS THR SEQRES 10 C 273 ARG PRO PHE GLU TYR LEU ARG LEU THR SER LEU GLY VAL SEQRES 11 C 273 ILE GLY ALA LEU VAL LYS THR ASP GLU GLN GLU VAL ILE SEQRES 12 C 273 ASN PHE LEU LEU THR THR GLU ILE ILE PRO LEU CYS LEU SEQRES 13 C 273 ARG ILE MET GLU SER GLY SER GLU LEU SER LYS THR VAL SEQRES 14 C 273 ALA THR PHE ILE LEU GLN LYS ILE LEU LEU ASP ASP THR SEQRES 15 C 273 GLY LEU ALA TYR ILE CYS GLN THR TYR GLU ARG PHE SER SEQRES 16 C 273 HIS VAL ALA MET ILE LEU GLY LYS MET VAL LEU GLN LEU SEQRES 17 C 273 SER LYS GLU PRO SER ALA ARG LEU LEU LYS HIS VAL VAL SEQRES 18 C 273 ARG CYS TYR LEU ARG LEU SER ASP ASN PRO ARG ALA ARG SEQRES 19 C 273 GLU ALA LEU ARG GLN CYS LEU PRO ASP GLN LEU LYS ASP SEQRES 20 C 273 THR THR PHE ALA GLN VAL LEU LYS ASP ASP THR THR THR SEQRES 21 C 273 LYS ARG TRP LEU ALA GLN LEU VAL LYS ASN LEU GLN GLU SEQRES 1 D 26 ASP ASP ASP LEU GLY PHE ASP PRO PHE VAL GLU THR GLN SEQRES 2 D 26 LYS GLY LEU ALA GLU LEU MET GLU ASN GLU VAL VAL GLN HET NA A 301 1 HET CL A 302 1 HET CL B 901 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 5 NA NA 1+ FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *64(H2 O) HELIX 1 1 MET A 16 SER A 30 1 15 HELIX 2 2 ARG A 35 LYS A 44 1 10 HELIX 3 3 LEU A 52 TRP A 57 1 6 HELIX 4 4 GLY A 61 ASN A 72 1 12 HELIX 5 5 ALA A 84 SER A 102 1 19 HELIX 6 6 ARG A 107 ALA A 112 1 6 HELIX 7 7 PRO A 116 HIS A 124 1 9 HELIX 8 8 ARG A 130 VAL A 147 1 18 HELIX 9 9 GLN A 152 THR A 160 1 9 HELIX 10 10 ILE A 163 GLU A 172 1 10 HELIX 11 11 GLU A 176 LEU A 191 1 16 HELIX 12 12 ASP A 193 ILE A 199 1 7 HELIX 13 13 TYR A 203 LYS A 222 1 20 HELIX 14 14 ALA A 226 LEU A 239 1 14 HELIX 15 16 THR A 270 LEU A 283 1 14 HELIX 16 17 PRO B 820 GLU B 833 1 14 HELIX 17 18 MET C 16 LEU C 29 1 14 HELIX 18 19 ARG C 35 LYS C 44 1 10 HELIX 19 20 LEU C 52 TRP C 57 1 6 HELIX 20 21 THR C 62 ASN C 72 1 11 HELIX 21 22 ALA C 84 ALA C 101 1 18 HELIX 22 23 ARG C 107 ALA C 112 1 6 HELIX 23 24 PRO C 116 LEU C 123 1 8 HELIX 24 25 ARG C 130 VAL C 147 1 18 HELIX 25 26 GLN C 152 THR C 160 1 9 HELIX 26 27 ILE C 163 MET C 171 1 9 HELIX 27 28 GLU C 176 LEU C 191 1 16 HELIX 28 29 ASP C 193 ILE C 199 1 7 HELIX 29 30 TYR C 203 LYS C 222 1 20 HELIX 30 31 ALA C 226 LEU C 239 1 14 HELIX 31 33 THR C 270 GLN C 284 1 15 HELIX 32 34 PRO D 820 GLU D 833 1 14 LINK OE1 GLN A 201 NA NA A 301 1555 1555 2.83 LINK OE1 GLN A 201 NA NA A 301 1555 7557 2.83 LINK NA NA A 301 O HOH A 420 1555 1555 2.97 LINK NA NA A 301 O HOH A 420 1555 7557 2.97 CISPEP 1 ASN A 78 PRO A 79 0 -6.03 CISPEP 2 ASN C 78 PRO C 79 0 -3.66 SITE 1 AC1 2 GLN A 201 HOH A 420 SITE 1 AC2 2 SER A 175 LEU A 177 SITE 1 AC3 4 ASP B 814 ASP B 815 LEU B 816 GLY B 817 CRYST1 85.630 90.320 196.990 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005076 0.00000