HEADER DNA BINDING PROTEIN 19-SEP-18 6HP7 TITLE ARBITRIUM PEPTIDE RECEPTOR FROM SPBETA PHAGE IN COMPLEX WITH 43 MER TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPBC2 PROPHAGE-DERIVED UNCHARACTERIZED PROTEIN YOPK; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (43-MER); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (43-MER); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: YOPK, BSU20860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPBETA; SOURCE 10 ORGANISM_TAXID: 66797; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPBETA; SOURCE 14 ORGANISM_TAXID: 66797 KEYWDS ARBITRIUM PEPTIDE RECEPTOR, SPBETA PHAGE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MARINA,F.GALLEGO DEL SOL REVDAT 4 15-MAY-24 6HP7 1 REMARK REVDAT 3 17-APR-19 6HP7 1 JRNL REVDAT 2 20-FEB-19 6HP7 1 JRNL REVDAT 1 13-FEB-19 6HP7 0 JRNL AUTH F.GALLEGO DEL SOL,J.R.PENADES,A.MARINA JRNL TITL DECIPHERING THE MOLECULAR MECHANISM UNDERPINNING PHAGE JRNL TITL 2 ARBITRIUM COMMUNICATION SYSTEMS. JRNL REF MOL.CELL V. 74 59 2019 JRNL REFN ISSN 1097-2765 JRNL PMID 30745087 JRNL DOI 10.1016/J.MOLCEL.2019.01.025 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 133.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 305 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6366 REMARK 3 NUCLEIC ACID ATOMS : 1763 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -3.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8486 ; 0.013 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11808 ; 1.754 ; 1.768 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 5.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 333 ;39.610 ;25.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1270 ;19.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;21.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1216 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5737 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3088 ; 2.227 ; 4.112 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3857 ; 3.396 ; 6.155 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5396 ; 2.895 ; 4.418 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13304 ; 7.843 ;54.009 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 386 B 1 386 25942 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8195 -9.1553 39.7175 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.0456 REMARK 3 T33: 0.0334 T12: 0.0010 REMARK 3 T13: 0.0606 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.3633 L22: 1.0939 REMARK 3 L33: 0.2482 L12: 0.0690 REMARK 3 L13: 0.1347 L23: 0.1617 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.0035 S13: 0.0319 REMARK 3 S21: -0.0513 S22: -0.0429 S23: 0.0533 REMARK 3 S31: -0.0447 S32: -0.0149 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 386 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4115 -9.7197 2.4186 REMARK 3 T TENSOR REMARK 3 T11: 0.0331 T22: 0.0952 REMARK 3 T33: 0.0298 T12: 0.0029 REMARK 3 T13: 0.0236 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.1217 L22: 1.2686 REMARK 3 L33: 0.3966 L12: 0.1402 REMARK 3 L13: 0.1002 L23: -0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: 0.0761 S13: 0.0062 REMARK 3 S21: 0.0778 S22: -0.0072 S23: 0.0620 REMARK 3 S31: 0.0231 S32: 0.0358 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9097 22.6933 25.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.1761 REMARK 3 T33: 0.2598 T12: -0.0153 REMARK 3 T13: 0.0036 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1196 L22: 0.1356 REMARK 3 L33: 2.4707 L12: 0.0427 REMARK 3 L13: -0.2947 L23: -0.2640 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: -0.0032 S13: 0.0650 REMARK 3 S21: 0.0480 S22: 0.0058 S23: 0.0046 REMARK 3 S31: -0.2178 S32: 0.1185 S33: -0.0618 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 43 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5126 22.7647 25.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.1739 REMARK 3 T33: 0.2750 T12: -0.0286 REMARK 3 T13: -0.0012 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1502 L22: 0.0960 REMARK 3 L33: 2.0005 L12: 0.0302 REMARK 3 L13: -0.3187 L23: -0.1125 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: -0.0076 S13: 0.0610 REMARK 3 S21: 0.0361 S22: 0.0255 S23: 0.0099 REMARK 3 S31: -0.1919 S32: -0.0133 S33: -0.0850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6HP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 133.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, HEPES, MAGNESIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 79.57850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.95350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.47675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.57850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.43025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 184.43025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.57850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.47675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 79.57850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.95350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.57850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 122.95350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.57850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 184.43025 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 61.47675 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.57850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 61.47675 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 184.43025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.57850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.57850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 122.95350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 267 O HOH B 501 2.10 REMARK 500 N3 DC C 25 N2 DG D 19 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 156 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 MET A 170 CG - SD - CE ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 82 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 82 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LEU B 156 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 242 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU B 366 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 DT C 16 C4' - C3' - O3' ANGL. DEV. = 15.7 DEGREES REMARK 500 DA D 11 C4' - C3' - O3' ANGL. DEV. = 15.0 DEGREES REMARK 500 DA D 31 C4' - C3' - O3' ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 100.97 -160.84 REMARK 500 SER A 209 79.86 -100.33 REMARK 500 PHE A 362 -72.51 -113.93 REMARK 500 ASP B 15 100.91 -161.05 REMARK 500 PHE B 362 -71.42 -111.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 101 DBREF 6HP7 A 1 386 UNP O31927 YOPK_BACSU 1 386 DBREF 6HP7 B 1 386 UNP O31927 YOPK_BACSU 1 386 DBREF 6HP7 C 1 43 PDB 6HP7 6HP7 1 43 DBREF 6HP7 D 1 43 PDB 6HP7 6HP7 1 43 SEQRES 1 A 386 MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU GLU SEQRES 2 A 386 ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL ALA SEQRES 3 A 386 GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU ASN SEQRES 4 A 386 HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE VAL SEQRES 5 A 386 ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR GLU SEQRES 6 A 386 LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS THR SEQRES 7 A 386 LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA ASN SEQRES 8 A 386 MET PHE PHE GLU ILE GLU ASP VAL LEU ILE ASP SER MET SEQRES 9 A 386 ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY LYS SEQRES 10 A 386 VAL TYR LYS ILE HIS ARG GLU LEU SER ASN SER VAL ILE SEQRES 11 A 386 THR GLU PHE GLU ALA VAL LYS ARG LEU GLY LYS LEU ASN SEQRES 12 A 386 ILE LYS THR PRO GLU MET ASN SER PHE SER ARG LEU LEU SEQRES 13 A 386 LEU LEU TYR HIS TYR LEU SER THR GLY ASN PHE SER PRO SEQRES 14 A 386 MET ALA GLN LEU ILE LYS GLN ILE ASP LEU SER GLU ILE SEQRES 15 A 386 SER GLU ASN MET TYR ILE ARG ASN THR TYR GLN THR ARG SEQRES 16 A 386 VAL HIS VAL LEU MET SER ASN ILE LYS LEU ASN GLU ASN SEQRES 17 A 386 SER LEU GLU GLU CYS ARG GLU TYR SER LYS LYS ALA LEU SEQRES 18 A 386 GLU SER THR ASN ILE LEU ARG PHE GLN VAL PHE SER TYR SEQRES 19 A 386 LEU THR ILE GLY ASN SER LEU LEU PHE SER ASN TYR GLU SEQRES 20 A 386 LEU ALA GLN GLU ASN PHE LEU LYS GLY LEU SER ILE SER SEQRES 21 A 386 VAL GLN ASN GLU ASN TYR ASN MET ILE PHE GLN GLN ALA SEQRES 22 A 386 LEU CYS PHE LEU ASN ASN VAL TRP ARG LYS GLU ASN LYS SEQRES 23 A 386 TRP ILE ASN PHE GLU SER ASP SER ILE MET ASP LEU GLN SEQRES 24 A 386 GLU GLN ALA HIS CYS PHE ILE ASN PHE ASN GLU ASN SER SEQRES 25 A 386 LYS ALA LYS GLU VAL LEU ASP LYS LEU ASP LEU LEU VAL SEQRES 26 A 386 HIS ASN ASP ASN GLU LEU ALA MET HIS TYR TYR LEU LYS SEQRES 27 A 386 GLY ARG LEU GLU GLN ASN LYS ALA CYS PHE TYR SER SER SEQRES 28 A 386 ILE GLU TYR PHE LYS LYS SER ASN ASP LYS PHE LEU ILE SEQRES 29 A 386 ARG LEU PRO LEU LEU GLU LEU GLN LYS MET GLY GLU ASN SEQRES 30 A 386 GLN LYS LEU LEU GLU LEU LEU LEU LEU SEQRES 1 B 386 MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU GLU SEQRES 2 B 386 ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL ALA SEQRES 3 B 386 GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU ASN SEQRES 4 B 386 HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE VAL SEQRES 5 B 386 ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR GLU SEQRES 6 B 386 LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS THR SEQRES 7 B 386 LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA ASN SEQRES 8 B 386 MET PHE PHE GLU ILE GLU ASP VAL LEU ILE ASP SER MET SEQRES 9 B 386 ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY LYS SEQRES 10 B 386 VAL TYR LYS ILE HIS ARG GLU LEU SER ASN SER VAL ILE SEQRES 11 B 386 THR GLU PHE GLU ALA VAL LYS ARG LEU GLY LYS LEU ASN SEQRES 12 B 386 ILE LYS THR PRO GLU MET ASN SER PHE SER ARG LEU LEU SEQRES 13 B 386 LEU LEU TYR HIS TYR LEU SER THR GLY ASN PHE SER PRO SEQRES 14 B 386 MET ALA GLN LEU ILE LYS GLN ILE ASP LEU SER GLU ILE SEQRES 15 B 386 SER GLU ASN MET TYR ILE ARG ASN THR TYR GLN THR ARG SEQRES 16 B 386 VAL HIS VAL LEU MET SER ASN ILE LYS LEU ASN GLU ASN SEQRES 17 B 386 SER LEU GLU GLU CYS ARG GLU TYR SER LYS LYS ALA LEU SEQRES 18 B 386 GLU SER THR ASN ILE LEU ARG PHE GLN VAL PHE SER TYR SEQRES 19 B 386 LEU THR ILE GLY ASN SER LEU LEU PHE SER ASN TYR GLU SEQRES 20 B 386 LEU ALA GLN GLU ASN PHE LEU LYS GLY LEU SER ILE SER SEQRES 21 B 386 VAL GLN ASN GLU ASN TYR ASN MET ILE PHE GLN GLN ALA SEQRES 22 B 386 LEU CYS PHE LEU ASN ASN VAL TRP ARG LYS GLU ASN LYS SEQRES 23 B 386 TRP ILE ASN PHE GLU SER ASP SER ILE MET ASP LEU GLN SEQRES 24 B 386 GLU GLN ALA HIS CYS PHE ILE ASN PHE ASN GLU ASN SER SEQRES 25 B 386 LYS ALA LYS GLU VAL LEU ASP LYS LEU ASP LEU LEU VAL SEQRES 26 B 386 HIS ASN ASP ASN GLU LEU ALA MET HIS TYR TYR LEU LYS SEQRES 27 B 386 GLY ARG LEU GLU GLN ASN LYS ALA CYS PHE TYR SER SER SEQRES 28 B 386 ILE GLU TYR PHE LYS LYS SER ASN ASP LYS PHE LEU ILE SEQRES 29 B 386 ARG LEU PRO LEU LEU GLU LEU GLN LYS MET GLY GLU ASN SEQRES 30 B 386 GLN LYS LEU LEU GLU LEU LEU LEU LEU SEQRES 1 C 43 DT DT DG DA DT DC DA DC DT DA DG DA DT SEQRES 2 C 43 DG DT DT DA DT DT DA DA DA DA DC DC DT SEQRES 3 C 43 DA DA DT DA DT DT DT DA DA DG DT DG DA SEQRES 4 C 43 DT DG DG DC SEQRES 1 D 43 DG DC DC DA DT DC DA DC DT DT DA DA DA SEQRES 2 D 43 DT DA DT DT DA DG DG DT DT DT DT DA DA SEQRES 3 D 43 DT DA DA DC DA DT DC DT DA DG DT DG DA SEQRES 4 D 43 DT DC DA DA HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 B 401 5 HET PO4 B 402 5 HET PO4 C 101 5 HET PO4 D 101 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 6(O4 P 3-) FORMUL 11 HOH *255(H2 O) HELIX 1 AA1 GLU A 2 ASP A 15 1 14 HELIX 2 AA2 SER A 17 ALA A 26 1 10 HELIX 3 AA3 PRO A 31 HIS A 40 1 10 HELIX 4 AA4 PHE A 48 TYR A 59 1 12 HELIX 5 AA5 ARG A 62 ASN A 73 1 12 HELIX 6 AA6 THR A 78 ASN A 91 1 14 HELIX 7 AA7 PHE A 93 SER A 106 1 14 HELIX 8 AA8 ASN A 109 ASN A 127 1 19 HELIX 9 AA9 THR A 131 LEU A 142 1 12 HELIX 10 AB1 THR A 146 THR A 164 1 19 HELIX 11 AB2 PRO A 169 ILE A 177 1 9 HELIX 12 AB3 ASP A 178 ILE A 182 5 5 HELIX 13 AB4 ASN A 185 GLU A 207 1 23 HELIX 14 AB5 SER A 209 THR A 224 1 16 HELIX 15 AB6 ILE A 226 LEU A 242 1 17 HELIX 16 AB7 ASN A 245 VAL A 261 1 17 HELIX 17 AB8 ASN A 263 TRP A 281 1 19 HELIX 18 AB9 SER A 294 PHE A 308 1 15 HELIX 19 AC1 GLU A 310 LEU A 323 1 14 HELIX 20 AC2 ASN A 327 GLN A 343 1 17 HELIX 21 AC3 ASN A 344 SER A 358 1 15 HELIX 22 AC4 ILE A 364 MET A 374 1 11 HELIX 23 AC5 ASN A 377 LEU A 384 1 8 HELIX 24 AC6 GLU B 2 ASP B 15 1 14 HELIX 25 AC7 SER B 17 ALA B 26 1 10 HELIX 26 AC8 PRO B 31 HIS B 40 1 10 HELIX 27 AC9 PHE B 48 TYR B 59 1 12 HELIX 28 AD1 ARG B 62 ASN B 73 1 12 HELIX 29 AD2 THR B 78 ASN B 91 1 14 HELIX 30 AD3 PHE B 93 SER B 106 1 14 HELIX 31 AD4 ASN B 109 ASN B 127 1 19 HELIX 32 AD5 THR B 131 LEU B 142 1 12 HELIX 33 AD6 THR B 146 THR B 164 1 19 HELIX 34 AD7 PRO B 169 GLN B 176 1 8 HELIX 35 AD8 ILE B 177 ILE B 182 5 6 HELIX 36 AD9 ASN B 185 GLU B 207 1 23 HELIX 37 AE1 SER B 209 THR B 224 1 16 HELIX 38 AE2 ILE B 226 LEU B 242 1 17 HELIX 39 AE3 ASN B 245 VAL B 261 1 17 HELIX 40 AE4 ASN B 263 TRP B 281 1 19 HELIX 41 AE5 SER B 294 PHE B 308 1 15 HELIX 42 AE6 GLU B 310 LEU B 323 1 14 HELIX 43 AE7 ASN B 327 GLN B 343 1 17 HELIX 44 AE8 ASN B 344 SER B 358 1 15 HELIX 45 AE9 ILE B 364 MET B 374 1 11 HELIX 46 AF1 ASN B 377 LEU B 384 1 8 SITE 1 AC1 5 ASN A 46 GLU A 47 SER A 183 GLU A 184 SITE 2 AC1 5 DG C 14 SITE 1 AC2 6 ASN A 245 GLU A 247 GLU A 376 GLU B 247 SITE 2 AC2 6 GLU B 251 HOH B 534 SITE 1 AC3 5 TYR B 159 VAL B 198 ARG B 228 PHE B 229 SITE 2 AC3 5 HOH B 505 SITE 1 AC4 5 ASN B 46 GLU B 47 SER B 183 GLU B 184 SITE 2 AC4 5 DT D 14 SITE 1 AC5 3 DT C 40 DG C 41 DT D 5 SITE 1 AC6 4 DA D 28 DA D 29 DT D 37 DG D 38 CRYST1 159.157 159.157 245.907 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004067 0.00000